Wall clock time and date at job start Tue Mar 31 2020 18:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46892 * 109.47349 * 2 1 4 4 C 1.46901 * 110.99845 * 288.15373 * 3 2 1 5 5 C 1.53000 * 109.47178 * 160.28674 * 4 3 2 6 6 C 1.50697 * 109.47360 * 185.08950 * 5 4 3 7 7 O 1.21281 * 119.99911 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00391 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99628 * 359.97438 * 8 6 5 10 10 C 1.46498 * 120.00178 * 179.97438 * 8 6 5 11 11 C 1.50703 * 109.46960 * 90.00039 * 10 8 6 12 12 H 1.07999 * 120.00232 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99776 * 180.02562 * 11 10 8 14 14 N 1.31510 * 119.99985 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99787 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47331 * 59.99895 * 15 13 11 17 17 H 1.48504 * 109.46850 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46983 * 299.99478 * 15 13 11 19 19 C 1.46904 * 111.00233 * 164.19862 * 3 2 1 20 20 C 1.50699 * 109.46934 * 293.95272 * 19 3 2 21 21 C 1.38264 * 119.94547 * 270.29928 * 20 19 3 22 22 C 1.38148 * 120.05544 * 180.29927 * 21 20 19 23 23 C 1.38728 * 119.94212 * 359.42339 * 22 21 20 24 24 O 1.35900 * 120.05260 * 180.29484 * 23 22 21 25 25 C 1.42902 * 116.99656 * 179.97438 * 24 23 22 26 26 C 1.38729 * 119.89223 * 0.27674 * 23 22 21 27 27 C 1.38150 * 119.94243 * 0.02562 * 26 23 22 28 28 H 1.08992 * 109.47566 * 59.31710 * 1 2 3 29 29 H 1.09001 * 109.47249 * 179.32101 * 1 2 3 30 30 H 1.09006 * 109.46837 * 299.31413 * 1 2 3 31 31 H 1.09005 * 109.46844 * 239.99418 * 2 1 3 32 32 H 1.09008 * 109.47315 * 120.00129 * 2 1 3 33 33 H 1.09005 * 109.46952 * 280.27913 * 4 3 2 34 34 H 1.08999 * 109.47569 * 40.28245 * 4 3 2 35 35 H 1.09002 * 109.47187 * 305.09318 * 5 4 3 36 36 H 1.09006 * 109.47224 * 65.08940 * 5 4 3 37 37 H 1.09003 * 109.47337 * 90.00521 * 9 8 6 38 38 H 1.09005 * 109.47402 * 210.00103 * 9 8 6 39 39 H 1.08996 * 109.47522 * 330.00105 * 9 8 6 40 40 H 1.09003 * 109.46921 * 209.99705 * 10 8 6 41 41 H 1.08999 * 109.47083 * 330.00372 * 10 8 6 42 42 H 0.97006 * 119.99672 * 180.02562 * 14 13 11 43 43 H 1.08998 * 109.46719 * 173.95484 * 19 3 2 44 44 H 1.09003 * 109.47035 * 53.95230 * 19 3 2 45 45 H 1.08005 * 119.97178 * 0.02562 * 21 20 19 46 46 H 1.08004 * 120.02777 * 179.69668 * 22 21 20 47 47 H 1.09008 * 109.47049 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.47690 * 300.00031 * 25 24 23 49 49 H 1.09008 * 109.47352 * 60.00715 * 25 24 23 50 50 H 1.07998 * 120.03498 * 180.02562 * 26 23 22 51 51 H 1.08000 * 119.97377 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7923 2.0236 -1.3032 5 6 1.8430 3.5442 -1.1416 6 6 1.4868 4.2007 -2.4505 7 8 1.2191 3.5194 -3.4175 8 7 1.4656 5.5448 -2.5466 9 6 1.7883 6.3678 -1.3784 10 6 1.1198 6.1829 -3.8191 11 6 -0.3693 6.4069 -3.8805 12 1 -0.9954 6.1038 -3.0544 13 6 -0.9323 6.9977 -4.9918 14 7 -0.1699 7.3663 -5.9979 15 14 -2.7779 7.2760 -5.0675 16 1 -3.1925 8.1552 -3.9449 17 1 -3.1286 7.9216 -6.3581 18 1 -3.4799 5.9718 -4.9602 19 6 3.4393 1.4414 0.3734 20 6 3.5994 1.0045 1.8068 21 6 3.5264 1.9373 2.8249 22 6 3.6790 1.5402 4.1392 23 6 3.8937 0.2026 4.4381 24 8 4.0381 -0.1913 5.7307 25 6 4.2558 -1.5842 5.9639 26 6 3.9603 -0.7322 3.4153 27 6 3.8133 -0.3292 2.1021 28 1 -0.3634 0.5243 -0.8837 29 1 -0.3634 -1.0276 -0.0122 30 1 -0.3633 0.5032 0.8961 31 1 1.8933 -0.5140 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.5656 1.7067 -2.0030 34 1 0.8143 1.7313 -1.6855 35 1 1.1317 3.8521 -0.3752 36 1 2.8483 3.8449 -0.8461 37 1 2.8596 6.5682 -1.3598 38 1 1.2434 7.3101 -1.4359 39 1 1.5022 5.8375 -0.4701 40 1 1.6347 7.1405 -3.8972 41 1 1.4245 5.5381 -4.6435 42 1 -0.5660 7.7824 -6.7796 43 1 3.8039 2.4625 0.2619 44 1 4.0122 0.7781 -0.2747 45 1 3.3544 2.9778 2.5920 46 1 3.6268 2.2700 4.9338 47 1 4.3535 -1.7624 7.0349 48 1 3.4110 -2.1539 5.5768 49 1 5.1687 -1.8990 5.4581 50 1 4.1269 -1.7742 3.6453 51 1 3.8647 -1.0566 1.3054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092794365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:20 Heat of formation + Delta-G solvation = -65.526398 kcal Electronic energy + Delta-G solvation = -28531.781811 eV Core-core repulsion = 24623.745644 eV Total energy + Delta-G solvation = -3908.036166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14706 -40.67923 -39.35441 -37.74735 -36.54852 -34.74107 -33.03795 -32.62536 -31.95063 -30.36595 -29.37949 -28.23513 -27.27161 -26.14788 -25.27585 -23.87211 -23.34705 -22.36749 -21.26017 -19.89808 -19.03795 -18.68606 -17.91442 -17.26121 -17.09059 -17.06344 -16.62604 -16.42218 -16.35332 -15.95614 -15.53611 -15.43126 -14.86942 -14.78287 -14.56703 -14.37845 -14.16212 -13.94720 -13.73316 -13.49098 -13.46000 -13.40042 -13.18733 -12.89408 -12.82275 -12.72347 -12.67521 -12.52811 -12.37181 -12.21209 -12.18162 -12.00165 -11.73189 -11.70136 -11.65859 -11.52876 -10.63828 -10.56955 -9.86913 -9.39046 -9.34744 -8.98909 -8.21735 -6.36682 0.45200 0.47024 1.36521 1.40938 1.48210 1.88042 2.30688 2.42755 2.43922 2.74495 3.07314 3.19507 3.82335 3.87145 3.93067 3.99304 4.02511 4.17650 4.21750 4.26917 4.39456 4.40985 4.45268 4.48429 4.50867 4.61813 4.66481 4.69069 4.74911 4.76046 4.79172 4.84772 4.88711 4.95016 4.99373 5.04424 5.09615 5.15041 5.17341 5.24320 5.35751 5.36405 5.43084 5.57425 5.74102 5.86158 5.87579 6.07215 6.07513 6.16158 6.49781 6.70650 6.82587 7.29156 7.51920 8.84904 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.002046 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.077749 B =13683.840859 C =14034.800247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.078 3.922 5 C -0.113 4.113 6 C 0.494 3.506 7 O -0.602 6.602 8 N -0.612 5.612 9 C 0.079 3.921 10 C 0.258 3.742 11 C -0.543 4.543 12 H 0.053 0.947 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.968 3.032 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.278 1.278 19 C 0.094 3.906 20 C -0.118 4.118 21 C -0.062 4.062 22 C -0.166 4.166 23 C 0.111 3.889 24 O -0.339 6.339 25 C 0.019 3.981 26 C -0.211 4.211 27 C -0.079 4.079 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.023 0.977 41 H -0.004 1.004 42 H 0.267 0.733 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.143 0.857 46 H 0.135 0.865 47 H 0.116 0.884 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.144 0.856 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.575 -16.911 25.229 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 N -0.256 5.256 4 C -0.050 4.050 5 C -0.153 4.153 6 C 0.283 3.717 7 O -0.485 6.485 8 N -0.343 5.343 9 C -0.063 4.063 10 C 0.137 3.863 11 C -0.581 4.581 12 H 0.071 0.929 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.792 3.208 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.204 1.204 19 C -0.033 4.033 20 C -0.118 4.118 21 C -0.080 4.080 22 C -0.184 4.184 23 C 0.066 3.934 24 O -0.253 6.253 25 C -0.075 4.075 26 C -0.230 4.230 27 C -0.098 4.098 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.041 0.959 41 H 0.015 0.985 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.062 0.938 45 H 0.161 0.839 46 H 0.153 0.847 47 H 0.134 0.866 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.162 0.838 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.179 -16.776 25.091 31.853 hybrid contribution -0.470 -0.317 -1.436 1.544 sum 9.709 -17.093 23.655 30.757 Atomic orbital electron populations 1.21769 0.95039 1.01893 1.01675 1.22206 0.96177 0.88536 1.01198 1.62017 1.17594 1.17750 1.28219 1.21663 1.01202 0.92955 0.89223 1.21526 1.05169 0.95171 0.93392 1.21423 0.76840 0.82176 0.91239 1.90628 1.51835 1.63933 1.42057 1.48206 1.66719 1.06190 1.13198 1.21937 1.01184 0.95967 0.87259 1.18740 0.94690 0.91538 0.81379 1.21685 0.93667 1.39655 1.03140 0.92893 1.25881 1.03463 0.95093 0.94865 1.70048 1.37492 1.41911 1.07350 0.85471 0.79006 0.78375 0.77979 1.18401 1.20301 1.20365 1.21085 0.88023 1.02307 0.91895 1.19686 1.03388 0.93729 0.95025 1.21027 0.95693 1.00479 0.90830 1.20638 1.06467 0.93673 0.97649 1.19262 0.96642 0.94097 0.83422 1.86044 1.87010 1.28771 1.23436 1.23305 1.01524 0.78329 1.04349 1.21378 1.08656 1.00122 0.92814 1.21032 0.97091 0.95506 0.96155 0.94209 0.91089 0.92227 0.95081 0.89158 0.95127 0.91810 0.86858 0.86681 0.91051 0.91800 0.88615 0.95919 0.98543 0.92423 0.88919 0.93791 0.83935 0.84702 0.86552 0.91929 0.91790 0.83831 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.99 71.98 0.72 -2.31 16 2 C 0.05 0.92 5.52 86.30 0.48 1.40 16 3 N -0.53 -11.41 4.38 -900.78 -3.95 -15.36 16 4 C 0.08 2.15 4.18 86.30 0.36 2.51 16 5 C -0.11 -3.09 4.29 29.85 0.13 -2.97 16 6 C 0.49 20.60 7.67 87.66 0.67 21.27 16 7 O -0.60 -31.61 15.50 -3.03 -0.05 -31.66 16 8 N -0.61 -26.22 2.86 -851.14 -2.43 -28.65 16 9 C 0.08 2.32 10.24 127.77 1.31 3.63 16 10 C 0.26 14.21 5.16 85.63 0.44 14.66 16 11 C -0.54 -31.87 9.39 25.60 0.24 -31.63 16 12 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 13 C 0.01 0.34 5.46 84.66 0.46 0.81 16 14 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 15 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 C 0.09 1.68 4.94 85.56 0.42 2.10 16 20 C -0.12 -2.01 4.94 -19.85 -0.10 -2.10 16 21 C -0.06 -1.04 9.69 22.25 0.22 -0.82 16 22 C -0.17 -2.91 9.99 22.37 0.22 -2.69 16 23 C 0.11 1.96 6.69 22.50 0.15 2.11 16 24 O -0.34 -5.69 10.50 -92.43 -0.97 -6.66 16 25 C 0.02 0.16 9.81 113.37 1.11 1.28 16 26 C -0.21 -3.18 9.04 22.37 0.20 -2.98 16 27 C -0.08 -1.23 7.84 22.26 0.17 -1.06 16 28 H 0.04 0.98 6.51 -2.39 -0.02 0.96 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.03 0.63 8.05 -2.38 -0.02 0.61 16 32 H 0.09 1.57 5.13 -2.38 -0.01 1.56 16 33 H 0.03 0.90 8.00 -2.38 -0.02 0.89 16 34 H 0.06 2.08 6.04 -2.39 -0.01 2.06 16 35 H 0.11 2.78 7.40 -2.39 -0.02 2.77 16 36 H 0.12 2.44 6.92 -2.38 -0.02 2.42 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.01 8.07 -2.38 -0.02 1.99 16 39 H 0.10 2.13 6.44 -2.39 -0.02 2.12 16 40 H 0.02 1.26 8.07 -2.39 -0.02 1.25 16 41 H 0.00 -0.23 7.42 -2.39 -0.02 -0.24 16 42 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 43 H 0.09 1.51 6.66 -2.39 -0.02 1.49 16 44 H 0.04 0.78 8.06 -2.39 -0.02 0.76 16 45 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 47 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.06 0.43 7.66 -2.39 -0.02 0.42 16 49 H 0.06 0.42 7.66 -2.38 -0.02 0.40 16 50 H 0.14 1.50 6.30 -2.91 -0.02 1.49 16 51 H 0.13 1.68 7.73 -2.91 -0.02 1.66 16 Total: -1.00 -77.37 409.15 3.03 -74.34 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.90 Total: 13.89 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 7.21 Total: 3.20 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -6.09 Total: -100.66 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.02 Total: -38.32 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -77.37 3.03 -74.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092794365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.816 kcal (2) G-P(sol) polarization free energy of solvation -77.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds