Wall clock time and date at job start Tue Mar 31 2020 18:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46759 * 2 1 4 4 C 1.46499 * 120.00326 * 269.99985 * 3 2 1 5 5 C 1.50702 * 109.47208 * 270.00344 * 4 3 2 6 6 H 1.08001 * 119.99699 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99860 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99886 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46794 * 60.00563 * 9 7 5 11 11 H 1.48494 * 109.46744 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46975 * 300.00479 * 9 7 5 13 13 C 1.34781 * 119.99705 * 90.00840 * 3 2 1 14 14 O 1.21276 * 119.99842 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99959 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.46934 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99975 * 66.05146 * 16 15 13 18 18 C 1.46903 * 110.99842 * 189.99935 * 16 15 13 19 19 C 1.50703 * 109.46980 * 170.00412 * 18 16 15 20 20 C 1.38281 * 119.94547 * 90.00288 * 19 18 16 21 21 C 1.38130 * 120.05819 * 180.02562 * 20 19 18 22 22 C 1.38757 * 119.94053 * 359.97438 * 21 20 19 23 23 O 1.35896 * 120.05265 * 180.02562 * 22 21 20 24 24 C 1.42905 * 117.00039 * 359.97438 * 23 22 21 25 25 C 1.38709 * 119.88984 * 0.27738 * 22 21 20 26 26 C 1.50701 * 120.02948 * 179.72382 * 25 22 21 27 27 C 1.38166 * 119.94120 * 359.49101 * 25 22 21 28 28 H 1.09003 * 109.46912 * 299.99686 * 1 2 3 29 29 H 1.08995 * 109.47204 * 59.99086 * 1 2 3 30 30 H 1.09001 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46724 * 240.00450 * 2 1 3 32 32 H 1.08994 * 109.46862 * 120.00493 * 2 1 3 33 33 H 1.08996 * 109.46817 * 30.00351 * 4 3 2 34 34 H 1.08993 * 109.46936 * 150.00337 * 4 3 2 35 35 H 0.97003 * 119.99543 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46675 * 60.00246 * 15 13 3 37 37 H 1.08998 * 109.47085 * 300.00363 * 15 13 3 38 38 H 1.08999 * 109.47583 * 183.94836 * 17 16 15 39 39 H 1.09003 * 109.46843 * 303.95429 * 17 16 15 40 40 H 1.09007 * 109.47074 * 63.94905 * 17 16 15 41 41 H 1.08995 * 109.46754 * 50.00641 * 18 16 15 42 42 H 1.08996 * 109.47656 * 290.00027 * 18 16 15 43 43 H 1.07996 * 119.97385 * 0.02562 * 20 19 18 44 44 H 1.07997 * 120.02883 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.47187 * 300.00222 * 24 23 22 46 46 H 1.09001 * 109.46558 * 60.00270 * 24 23 22 47 47 H 1.09001 * 109.47103 * 179.97438 * 24 23 22 48 48 H 1.08999 * 109.46852 * 89.99583 * 26 25 22 49 49 H 1.08994 * 109.46996 * 210.00468 * 26 25 22 50 50 H 1.08996 * 109.46797 * 330.00359 * 26 25 22 51 51 H 1.08009 * 119.97198 * 180.23071 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3899 -2.8779 8 7 3.3489 3.1260 -3.6180 9 14 5.9130 2.0958 -3.4176 10 1 6.1400 0.6391 -3.5950 11 1 6.1604 2.7961 -4.7035 12 1 6.8410 2.6191 -2.3829 13 6 2.2431 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9915 1.3061 2.4724 16 7 2.3093 2.2062 3.5889 17 6 1.3826 3.3454 3.6269 18 6 2.3054 1.4816 4.8668 19 6 2.8696 2.3669 5.9480 20 6 2.0288 3.1886 6.6760 21 6 2.5435 4.0014 7.6672 22 6 3.9055 3.9923 7.9325 23 8 4.4143 4.7906 8.9075 24 6 3.4891 5.6146 9.6199 25 6 4.7475 3.1709 7.1973 26 6 6.2280 3.1632 7.4786 27 6 4.2269 2.3563 6.2102 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1382 35 1 3.6750 3.5165 -4.4439 36 1 2.6215 0.4184 2.5301 37 1 0.9435 1.0123 2.5300 38 1 1.6827 4.0317 4.4188 39 1 1.4052 3.8642 2.6686 40 1 0.3723 2.9856 3.8216 41 1 2.9163 0.5834 4.7769 42 1 1.2835 1.2019 5.1228 43 1 0.9688 3.1951 6.4694 44 1 1.8865 4.6433 8.2351 45 1 2.9892 6.2865 8.9223 46 1 2.7479 4.9858 10.1132 47 1 4.0247 6.1993 10.3678 48 1 6.4504 2.4089 8.2333 49 1 6.7707 2.9316 6.5622 50 1 6.5335 4.1436 7.8439 51 1 4.8816 1.7138 5.6399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103144301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:51 Heat of formation + Delta-G solvation = -61.755771 kcal Electronic energy + Delta-G solvation = -28955.940195 eV Core-core repulsion = 25048.067535 eV Total energy + Delta-G solvation = -3907.872660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29129 -40.78546 -39.01606 -37.45891 -36.68811 -34.89075 -33.80632 -32.01926 -31.53986 -30.04776 -28.63640 -28.35314 -27.91830 -27.10478 -25.00059 -24.22534 -23.24294 -22.73448 -21.30632 -19.82238 -18.89201 -18.60165 -17.96184 -17.41981 -17.24214 -16.75002 -16.61200 -16.45377 -15.91724 -15.74871 -15.49668 -15.25847 -14.84030 -14.61359 -14.51228 -14.40842 -14.29011 -14.05602 -13.87921 -13.56007 -13.32003 -13.24149 -13.09019 -12.94000 -12.82433 -12.69735 -12.65949 -12.59402 -12.46848 -12.44847 -12.14125 -12.09220 -11.86060 -11.78302 -11.69896 -11.65035 -10.62865 -10.45292 -9.71694 -9.40643 -9.22289 -8.91521 -8.20624 -6.35204 0.40733 0.44119 1.36336 1.41327 1.48228 1.92562 2.26528 2.40977 2.42406 2.73239 3.08526 3.25968 3.75160 3.82256 3.85137 3.95132 4.13165 4.22181 4.26894 4.35797 4.38183 4.39320 4.42260 4.45682 4.47789 4.55557 4.64078 4.67574 4.67705 4.73460 4.77538 4.82667 4.83053 4.96512 5.00874 5.01685 5.07882 5.16106 5.24313 5.30845 5.38401 5.40550 5.46762 5.60852 5.70249 5.87112 5.89582 6.01439 6.09611 6.16324 6.47536 6.73339 6.88714 7.31353 7.60068 8.85994 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.002523 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.491594 B =11094.358495 C =12229.620543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.581 6.581 15 C 0.053 3.947 16 N -0.543 5.543 17 C 0.028 3.972 18 C 0.103 3.897 19 C -0.117 4.117 20 C -0.082 4.082 21 C -0.209 4.209 22 C 0.110 3.890 23 O -0.333 6.333 24 C 0.019 3.981 25 C -0.138 4.138 26 C -0.101 4.101 27 C -0.072 4.072 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.137 0.863 44 H 0.147 0.853 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.117 0.883 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 -5.751 26.490 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.284 3.716 14 O -0.460 6.460 15 C -0.078 4.078 16 N -0.267 5.267 17 C -0.120 4.120 18 C -0.024 4.024 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.228 4.228 22 C 0.065 3.935 23 O -0.246 6.246 24 C -0.075 4.075 25 C -0.139 4.139 26 C -0.157 4.157 27 C -0.091 4.091 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.155 0.845 44 H 0.164 0.836 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.136 0.864 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.324 -4.867 26.296 27.090 hybrid contribution -0.190 0.327 -0.800 0.885 sum -4.514 -4.540 25.497 26.288 Atomic orbital electron populations 1.22149 0.94714 1.03435 1.01502 1.21738 0.95180 0.81403 1.03934 1.48300 1.64308 1.15146 1.06135 1.18629 0.95120 0.91348 0.80547 1.21690 0.97954 1.31832 1.06355 0.92931 1.25865 1.02356 0.94554 0.96508 1.70051 1.37790 1.34310 1.14829 0.85490 0.79102 0.79084 0.77276 1.18295 1.20382 1.20483 1.21243 0.77324 0.86711 0.86336 1.90617 1.47054 1.20637 1.87721 1.21999 1.02624 0.95737 0.87411 1.61508 1.53197 1.09541 1.02472 1.22405 0.93181 0.93983 1.02392 1.21058 1.00702 0.95087 0.85525 1.19730 0.93738 1.00261 0.98023 1.21039 1.00275 0.94458 0.94239 1.21406 0.93967 1.04593 1.02823 1.19020 0.92280 0.92128 0.90100 1.86026 1.38128 1.53545 1.46947 1.23307 0.94239 0.93756 0.96218 1.19532 0.96981 0.99013 0.98328 1.20583 0.90201 1.02696 1.02270 1.20931 0.95024 0.97668 0.95481 0.92254 0.94516 0.88585 0.91131 0.88005 0.96202 0.98908 0.92485 0.85967 0.89500 0.91279 0.93260 0.94210 0.88577 0.91965 0.84471 0.83568 0.92314 0.91578 0.86433 0.90507 0.91359 0.91813 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 10.24 71.98 0.74 -3.10 16 2 C 0.10 2.97 5.93 86.38 0.51 3.48 16 3 N -0.61 -25.82 2.46 -826.16 -2.03 -27.85 16 4 C 0.27 14.61 5.16 85.63 0.44 15.05 16 5 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.34 5.46 84.65 0.46 0.81 16 8 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 9 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 13 C 0.50 20.81 7.36 87.66 0.65 21.46 16 14 O -0.58 -30.93 13.91 -3.02 -0.04 -30.97 16 15 C 0.05 1.47 4.00 85.56 0.34 1.81 16 16 N -0.54 -15.56 4.49 -931.63 -4.18 -19.74 16 17 C 0.03 0.83 8.78 127.69 1.12 1.95 16 18 C 0.10 2.09 5.12 85.56 0.44 2.53 16 19 C -0.12 -2.61 4.88 -19.85 -0.10 -2.70 16 20 C -0.08 -1.64 7.96 22.25 0.18 -1.46 16 21 C -0.21 -4.13 9.04 22.37 0.20 -3.93 16 22 C 0.11 2.49 6.66 22.51 0.15 2.64 16 23 O -0.33 -6.82 9.54 -92.39 -0.88 -7.70 16 24 C 0.02 0.23 9.81 113.37 1.11 1.34 16 25 C -0.14 -3.26 5.89 -19.77 -0.12 -3.38 16 26 C -0.10 -2.03 9.79 71.24 0.70 -1.33 16 27 C -0.07 -1.71 9.35 22.25 0.21 -1.50 16 28 H 0.06 1.30 7.22 -2.39 -0.02 1.29 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 32 H 0.10 2.25 6.44 -2.39 -0.02 2.23 16 33 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 34 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.12 2.79 7.19 -2.38 -0.02 2.77 16 37 H 0.09 1.90 7.16 -2.39 -0.02 1.88 16 38 H 0.07 1.95 6.16 -2.39 -0.01 1.94 16 39 H 0.05 1.88 5.83 -2.39 -0.01 1.87 16 40 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.10 1.68 7.87 -2.39 -0.02 1.66 16 42 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16 43 H 0.14 2.21 8.03 -2.91 -0.02 2.18 16 44 H 0.15 2.11 6.30 -2.91 -0.02 2.09 16 45 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 46 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 47 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 50 H 0.06 1.31 7.53 -2.39 -0.02 1.29 16 51 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -80.26 409.03 3.35 -76.91 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.90 Total: 16.49 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 7.27 Total: 2.12 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.93 Total: -104.78 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.92 Total: -38.68 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -80.26 3.35 -76.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103144301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.150 kcal (2) G-P(sol) polarization free energy of solvation -80.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds