Wall clock time and date at job start Tue Mar 31 2020 19:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47132 * 2 1 4 4 C 1.46902 * 110.99740 * 72.37827 * 3 2 1 5 5 C 1.52999 * 109.47373 * 199.82803 * 4 3 2 6 6 O 1.42898 * 109.47148 * 65.13334 * 5 4 3 7 7 C 1.46891 * 111.00256 * 196.33287 * 3 2 1 8 8 C 1.50705 * 109.47299 * 66.04725 * 7 3 2 9 9 O 1.21292 * 119.99494 * 0.02562 * 8 7 3 10 10 N 1.34769 * 120.00324 * 179.97438 * 8 7 3 11 11 C 1.46502 * 120.00216 * 0.02562 * 10 8 7 12 12 C 1.50693 * 109.47042 * 269.99843 * 11 10 8 13 13 H 1.07996 * 120.00387 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00014 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99949 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00229 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47247 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47215 * 120.00292 * 16 14 12 19 19 H 1.48503 * 109.47120 * 239.99970 * 16 14 12 20 20 C 1.39924 * 120.00012 * 179.97438 * 10 8 7 21 21 C 1.38895 * 120.07440 * 270.00155 * 20 10 8 22 22 C 1.38094 * 119.93149 * 179.97438 * 21 20 10 23 23 C 1.38309 * 120.06782 * 0.25643 * 22 21 20 24 24 C 1.38258 * 120.14022 * 359.49283 * 23 22 21 25 25 C 1.50702 * 119.96302 * 180.25461 * 24 23 22 26 26 C 1.38132 * 120.07381 * 0.50540 * 24 23 22 27 27 C 1.50702 * 120.03830 * 179.76949 * 26 24 23 28 28 H 1.09001 * 109.46817 * 181.65924 * 1 2 3 29 29 H 1.09003 * 109.47152 * 301.65198 * 1 2 3 30 30 H 1.09000 * 109.47551 * 61.65502 * 1 2 3 31 31 H 1.09002 * 109.46846 * 240.00342 * 2 1 3 32 32 H 1.09000 * 109.47204 * 120.00058 * 2 1 3 33 33 H 1.09000 * 109.47296 * 319.82895 * 4 3 2 34 34 H 1.09001 * 109.46985 * 79.83261 * 4 3 2 35 35 H 1.08997 * 109.47495 * 185.13633 * 5 4 3 36 36 H 1.09005 * 109.46980 * 305.13494 * 5 4 3 37 37 H 0.96702 * 114.00269 * 184.99496 * 6 5 4 38 38 H 1.08996 * 109.47272 * 306.04698 * 7 3 2 39 39 H 1.09001 * 109.47618 * 186.04987 * 7 3 2 40 40 H 1.09007 * 109.46783 * 30.00003 * 11 10 8 41 41 H 1.09000 * 109.47325 * 149.99834 * 11 10 8 42 42 H 0.96998 * 120.00036 * 179.97438 * 15 14 12 43 43 H 1.07999 * 120.03284 * 359.96329 * 21 20 10 44 44 H 1.07994 * 119.96090 * 179.97438 * 22 21 20 45 45 H 1.07992 * 119.92492 * 179.74005 * 23 22 21 46 46 H 1.08996 * 109.47155 * 270.25570 * 25 24 23 47 47 H 1.09000 * 109.47130 * 30.25295 * 25 24 23 48 48 H 1.08995 * 109.47439 * 150.25320 * 25 24 23 49 49 H 1.09000 * 109.46794 * 269.97982 * 27 26 24 50 50 H 1.09003 * 109.46976 * 29.97619 * 27 26 24 51 51 H 1.08997 * 109.47226 * 149.97964 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8037 2.0196 1.3071 5 6 1.8501 3.5408 1.1494 6 8 0.7543 3.9693 0.3385 7 6 3.4359 1.4427 -0.3856 8 6 3.5835 1.0103 -1.8218 9 8 2.6050 0.6864 -2.4612 10 7 4.8025 0.9844 -2.3958 11 6 5.9843 1.3762 -1.6237 12 6 6.2193 2.8563 -1.7812 13 1 5.5550 3.4462 -2.3953 14 6 7.2823 3.4576 -1.1412 15 7 8.0915 2.7391 -0.3937 16 14 7.5731 5.2925 -1.3357 17 1 6.5301 5.8677 -2.2224 18 1 7.5086 5.9478 -0.0047 19 1 8.9125 5.5205 -1.9353 20 6 4.9396 0.5824 -3.7291 21 6 5.1523 -0.7558 -4.0342 22 6 5.2866 -1.1493 -5.3510 23 6 5.2149 -0.2117 -6.3653 24 6 4.9981 1.1204 -6.0651 25 6 4.9150 2.1378 -7.1738 26 6 4.8629 1.5205 -4.7500 27 6 4.6318 2.9735 -4.4235 28 1 -0.3633 -1.0273 0.0298 29 1 -0.3633 0.5393 0.8748 30 1 -0.3634 0.4879 -0.9044 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8299 1.7245 1.6979 34 1 2.5842 1.7021 1.9986 35 1 1.7812 4.0101 2.1308 36 1 2.7880 3.8283 0.6742 37 1 0.7631 4.9141 0.1327 38 1 4.0144 0.7775 0.2554 39 1 3.8016 2.4634 -0.2741 40 1 5.8239 1.1436 -0.5709 41 1 6.8541 0.8295 -1.9881 42 1 8.8396 3.1620 0.0563 43 1 5.2127 -1.4877 -3.2424 44 1 5.4524 -2.1896 -5.5888 45 1 5.3244 -0.5214 -7.3940 46 1 5.9101 2.5308 -7.3817 47 1 4.5161 1.6653 -8.0714 48 1 4.2585 2.9532 -6.8702 49 1 5.5914 3.4718 -4.2851 50 1 4.0906 3.4482 -5.2420 51 1 4.0465 3.0514 -3.5073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103283302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:01 Heat of formation + Delta-G solvation = -47.685867 kcal Electronic energy + Delta-G solvation = -30823.634401 eV Core-core repulsion = 26916.371858 eV Total energy + Delta-G solvation = -3907.262543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.09843 -38.65457 -37.31247 -35.77423 -34.95836 -33.06643 -32.59695 -31.17566 -30.59363 -29.11269 -27.77959 -26.69286 -26.01835 -25.34191 -23.02084 -22.51284 -21.88415 -20.43828 -20.24536 -18.49163 -17.21726 -16.82677 -16.60202 -16.08665 -15.53051 -15.48448 -15.05381 -14.85596 -14.60786 -14.12838 -14.12555 -13.66659 -13.40609 -13.21623 -13.04656 -12.74988 -12.55325 -12.48808 -12.33542 -12.24381 -12.12135 -11.89835 -11.60325 -11.55683 -11.45599 -11.31289 -11.29063 -11.08457 -10.93138 -10.75541 -10.59975 -10.54611 -10.42940 -10.18294 -9.71061 -9.59638 -9.02352 -8.62482 -8.12884 -8.00804 -7.91274 -7.85512 -6.23261 -4.29463 1.78634 1.85729 3.16064 3.25698 3.27558 3.37924 3.67577 4.16405 4.25205 4.33809 4.49162 5.10119 5.19263 5.22384 5.26053 5.27629 5.40266 5.46265 5.49925 5.53375 5.57375 5.62403 5.66637 5.78538 5.81807 5.82465 5.90503 5.92002 5.95412 6.02446 6.09406 6.17901 6.22614 6.27363 6.38422 6.39305 6.45235 6.56300 6.74361 6.82249 6.89204 6.94158 7.07738 7.20725 7.29220 7.32859 7.41572 7.71028 7.79922 7.89301 8.00398 8.25670 8.76235 9.05729 9.38105 10.84110 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.005622 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.015455 B = 4979.438461 C = 7103.650765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.049 3.951 3 N -0.512 5.512 4 C 0.054 3.946 5 C 0.080 3.920 6 O -0.558 6.558 7 C 0.042 3.958 8 C 0.524 3.476 9 O -0.540 6.540 10 N -0.565 5.565 11 C 0.240 3.760 12 C -0.542 4.542 13 H 0.076 0.924 14 C 0.066 3.934 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.172 3.828 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.091 4.091 25 C -0.112 4.112 26 C -0.062 4.062 27 C -0.109 4.109 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.022 0.978 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.371 0.629 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.054 0.946 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 -2.134 -1.868 8.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 N -0.237 5.237 4 C -0.074 4.074 5 C 0.001 3.999 6 O -0.362 6.362 7 C -0.088 4.088 8 C 0.313 3.687 9 O -0.417 6.417 10 N -0.295 5.295 11 C 0.122 3.878 12 C -0.580 4.580 13 H 0.094 0.906 14 C -0.137 4.137 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.081 3.919 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.091 4.091 25 C -0.168 4.168 26 C -0.064 4.064 27 C -0.165 4.165 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.216 0.784 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.073 0.927 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.327 -2.669 -2.347 9.054 hybrid contribution 1.340 1.113 0.743 1.893 sum -6.987 -1.556 -1.605 7.336 Atomic orbital electron populations 1.21676 0.95117 1.00343 1.02338 1.22166 0.96227 0.88652 1.00780 1.61604 1.16567 1.17752 1.27738 1.22180 1.01575 0.93542 0.90152 1.22198 0.89917 0.94520 0.93240 1.86576 1.47800 1.28876 1.72959 1.22005 0.88981 1.04175 0.93671 1.20336 0.82209 0.77213 0.88963 1.90624 1.37639 1.48623 1.64845 1.45851 1.08937 1.65268 1.09456 1.19514 0.81502 0.96018 0.90781 1.21817 1.12580 0.93174 1.30460 0.90572 1.24936 0.95625 0.98278 0.94881 1.69937 1.16208 1.35834 1.30983 0.86545 0.78411 0.85148 0.78071 1.19463 1.20891 1.20859 1.17325 0.98760 0.91424 0.84344 1.21222 1.00907 0.95156 0.96595 1.20821 1.01941 0.98994 0.92384 1.20861 1.02165 0.92637 0.98690 1.19584 1.01250 0.94542 0.93752 1.20799 1.02145 0.97870 0.96034 1.19971 0.98097 0.96445 0.91859 1.20948 1.02574 0.91634 1.01390 0.93170 0.93332 0.91660 0.89399 0.96028 0.90013 0.93327 0.93889 0.93018 0.78362 0.92361 0.86752 0.94323 0.94621 0.92627 0.86576 0.86461 0.86643 0.91411 0.92120 0.91255 0.89864 0.92723 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.01 37.16 0.37 -1.58 16 2 C 0.05 0.79 5.23 -3.83 -0.02 0.77 16 3 N -0.51 -8.71 4.07 -236.08 -0.96 -9.67 16 4 C 0.05 0.76 5.21 -3.82 -0.02 0.74 16 5 C 0.08 1.08 7.24 37.16 0.27 1.35 16 6 O -0.56 -8.08 13.61 -35.23 -0.48 -8.56 16 7 C 0.04 0.78 3.83 -4.98 -0.02 0.76 16 8 C 0.52 11.01 6.53 -10.99 -0.07 10.93 16 9 O -0.54 -12.43 14.46 5.55 0.08 -12.35 16 10 N -0.57 -12.02 1.66 -114.73 -0.19 -12.21 16 11 C 0.24 5.57 4.96 -5.20 -0.03 5.55 16 12 C -0.54 -13.28 8.64 -34.44 -0.30 -13.57 16 13 H 0.08 1.85 4.33 -52.49 -0.23 1.62 16 14 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -23.77 13.29 55.43 0.74 -23.04 16 16 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.17 3.55 4.44 -83.69 -0.37 3.18 16 21 C -0.12 -2.21 9.97 -39.39 -0.39 -2.60 16 22 C -0.12 -1.95 10.04 -39.61 -0.40 -2.34 16 23 C -0.13 -1.93 9.70 -39.55 -0.38 -2.31 16 24 C -0.09 -1.52 5.88 -104.65 -0.62 -2.13 16 25 C -0.11 -1.49 9.60 36.01 0.35 -1.14 16 26 C -0.06 -1.22 5.90 -104.43 -0.62 -1.83 16 27 C -0.11 -2.09 7.71 36.01 0.28 -1.81 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.64 6.52 -51.93 -0.34 0.30 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.61 5.81 -51.93 -0.30 1.30 16 32 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 33 H 0.08 1.09 6.25 -51.93 -0.32 0.77 16 34 H 0.05 0.63 8.00 -51.93 -0.42 0.22 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.76 6.67 -51.93 -0.35 0.41 16 37 H 0.37 3.77 9.12 45.56 0.42 4.18 16 38 H 0.06 1.04 7.38 -51.93 -0.38 0.66 16 39 H 0.11 2.21 6.43 -51.93 -0.33 1.88 16 40 H 0.04 0.91 6.44 -51.93 -0.33 0.57 16 41 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 42 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 43 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 44 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.07 0.91 5.94 -51.93 -0.31 0.60 16 49 H 0.08 1.66 7.04 -51.93 -0.37 1.29 16 50 H 0.05 0.90 5.95 -51.93 -0.31 0.59 16 51 H 0.07 1.49 6.04 -51.93 -0.31 1.18 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -30.15 399.41 -9.12 -39.27 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.24 Total: 10.32 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.06 Total: -4.49 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.42 Total: -44.92 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.40 Total: -20.92 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.15 -9.12 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103283302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.421 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds