Wall clock time and date at job start Tue Mar 31 2020 19:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47132 * 2 1 4 4 C 1.46902 * 110.99740 * 72.37827 * 3 2 1 5 5 C 1.52999 * 109.47373 * 199.82803 * 4 3 2 6 6 O 1.42898 * 109.47148 * 65.13334 * 5 4 3 7 7 C 1.46891 * 111.00256 * 196.33287 * 3 2 1 8 8 C 1.50705 * 109.47299 * 66.04725 * 7 3 2 9 9 O 1.21292 * 119.99494 * 0.02562 * 8 7 3 10 10 N 1.34769 * 120.00324 * 179.97438 * 8 7 3 11 11 C 1.46502 * 120.00216 * 0.02562 * 10 8 7 12 12 C 1.50693 * 109.47042 * 269.99843 * 11 10 8 13 13 H 1.07996 * 120.00387 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00014 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99949 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00229 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47247 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47215 * 120.00292 * 16 14 12 19 19 H 1.48503 * 109.47120 * 239.99970 * 16 14 12 20 20 C 1.39924 * 120.00012 * 179.97438 * 10 8 7 21 21 C 1.38895 * 120.07440 * 270.00155 * 20 10 8 22 22 C 1.38094 * 119.93149 * 179.97438 * 21 20 10 23 23 C 1.38309 * 120.06782 * 0.25643 * 22 21 20 24 24 C 1.38258 * 120.14022 * 359.49283 * 23 22 21 25 25 C 1.50702 * 119.96302 * 180.25461 * 24 23 22 26 26 C 1.38132 * 120.07381 * 0.50540 * 24 23 22 27 27 C 1.50702 * 120.03830 * 179.76949 * 26 24 23 28 28 H 1.09001 * 109.46817 * 181.65924 * 1 2 3 29 29 H 1.09003 * 109.47152 * 301.65198 * 1 2 3 30 30 H 1.09000 * 109.47551 * 61.65502 * 1 2 3 31 31 H 1.09002 * 109.46846 * 240.00342 * 2 1 3 32 32 H 1.09000 * 109.47204 * 120.00058 * 2 1 3 33 33 H 1.09000 * 109.47296 * 319.82895 * 4 3 2 34 34 H 1.09001 * 109.46985 * 79.83261 * 4 3 2 35 35 H 1.08997 * 109.47495 * 185.13633 * 5 4 3 36 36 H 1.09005 * 109.46980 * 305.13494 * 5 4 3 37 37 H 0.96702 * 114.00269 * 184.99496 * 6 5 4 38 38 H 1.08996 * 109.47272 * 306.04698 * 7 3 2 39 39 H 1.09001 * 109.47618 * 186.04987 * 7 3 2 40 40 H 1.09007 * 109.46783 * 30.00003 * 11 10 8 41 41 H 1.09000 * 109.47325 * 149.99834 * 11 10 8 42 42 H 0.96998 * 120.00036 * 179.97438 * 15 14 12 43 43 H 1.07999 * 120.03284 * 359.96329 * 21 20 10 44 44 H 1.07994 * 119.96090 * 179.97438 * 22 21 20 45 45 H 1.07992 * 119.92492 * 179.74005 * 23 22 21 46 46 H 1.08996 * 109.47155 * 270.25570 * 25 24 23 47 47 H 1.09000 * 109.47130 * 30.25295 * 25 24 23 48 48 H 1.08995 * 109.47439 * 150.25320 * 25 24 23 49 49 H 1.09000 * 109.46794 * 269.97982 * 27 26 24 50 50 H 1.09003 * 109.46976 * 29.97619 * 27 26 24 51 51 H 1.08997 * 109.47226 * 149.97964 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8037 2.0196 1.3071 5 6 1.8501 3.5408 1.1494 6 8 0.7543 3.9693 0.3385 7 6 3.4359 1.4427 -0.3856 8 6 3.5835 1.0103 -1.8218 9 8 2.6050 0.6864 -2.4612 10 7 4.8025 0.9844 -2.3958 11 6 5.9843 1.3762 -1.6237 12 6 6.2193 2.8563 -1.7812 13 1 5.5550 3.4462 -2.3953 14 6 7.2823 3.4576 -1.1412 15 7 8.0915 2.7391 -0.3937 16 14 7.5731 5.2925 -1.3357 17 1 6.5301 5.8677 -2.2224 18 1 7.5086 5.9478 -0.0047 19 1 8.9125 5.5205 -1.9353 20 6 4.9396 0.5824 -3.7291 21 6 5.1523 -0.7558 -4.0342 22 6 5.2866 -1.1493 -5.3510 23 6 5.2149 -0.2117 -6.3653 24 6 4.9981 1.1204 -6.0651 25 6 4.9150 2.1378 -7.1738 26 6 4.8629 1.5205 -4.7500 27 6 4.6318 2.9735 -4.4235 28 1 -0.3633 -1.0273 0.0298 29 1 -0.3633 0.5393 0.8748 30 1 -0.3634 0.4879 -0.9044 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8299 1.7245 1.6979 34 1 2.5842 1.7021 1.9986 35 1 1.7812 4.0101 2.1308 36 1 2.7880 3.8283 0.6742 37 1 0.7631 4.9141 0.1327 38 1 4.0144 0.7775 0.2554 39 1 3.8016 2.4634 -0.2741 40 1 5.8239 1.1436 -0.5709 41 1 6.8541 0.8295 -1.9881 42 1 8.8396 3.1620 0.0563 43 1 5.2127 -1.4877 -3.2424 44 1 5.4524 -2.1896 -5.5888 45 1 5.3244 -0.5214 -7.3940 46 1 5.9101 2.5308 -7.3817 47 1 4.5161 1.6653 -8.0714 48 1 4.2585 2.9532 -6.8702 49 1 5.5914 3.4718 -4.2851 50 1 4.0906 3.4482 -5.2420 51 1 4.0465 3.0514 -3.5073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103283302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:00 Heat of formation + Delta-G solvation = -66.438726 kcal Electronic energy + Delta-G solvation = -30824.447586 eV Core-core repulsion = 26916.371858 eV Total energy + Delta-G solvation = -3908.075728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63420 -40.02585 -38.62015 -37.02522 -36.59904 -34.68298 -34.19191 -32.53076 -31.90013 -30.39714 -29.49862 -28.13959 -27.32061 -26.72918 -24.92104 -23.68568 -23.28173 -21.76873 -21.51190 -20.03919 -18.71712 -18.31809 -18.14625 -17.67460 -16.99417 -16.79535 -16.48560 -16.28213 -16.17157 -15.62601 -15.46371 -14.94231 -14.69707 -14.53371 -14.36409 -14.19073 -14.11265 -13.86203 -13.66284 -13.60247 -13.51997 -13.42788 -13.23789 -12.95953 -12.76067 -12.72037 -12.66622 -12.60414 -12.56351 -12.17786 -11.98728 -11.92855 -11.74982 -11.70441 -11.41005 -10.80131 -10.70785 -10.55061 -9.60431 -9.47128 -9.40280 -9.21573 -8.19332 -6.31296 0.41796 0.49694 1.38708 1.42956 1.52479 1.71211 2.14598 2.41467 2.80581 2.96533 3.12163 3.48782 3.78739 3.94806 4.03051 4.06453 4.15056 4.16271 4.21552 4.29486 4.33471 4.40075 4.44744 4.59246 4.60074 4.66047 4.69665 4.72183 4.72851 4.78474 4.79130 4.87642 4.91608 4.99971 5.00249 5.01986 5.13222 5.15968 5.17525 5.36379 5.42160 5.52179 5.60843 5.70097 5.79318 5.86369 5.99763 6.06939 6.18135 6.26706 6.54232 6.82136 6.99645 7.33940 7.44671 8.87855 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.005622 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.015455 B = 4979.438461 C = 7103.650765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.049 3.951 3 N -0.526 5.526 4 C 0.050 3.950 5 C 0.080 3.920 6 O -0.579 6.579 7 C 0.053 3.947 8 C 0.521 3.479 9 O -0.563 6.563 10 N -0.562 5.562 11 C 0.258 3.742 12 C -0.542 4.542 13 H 0.076 0.924 14 C 0.023 3.977 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.283 1.283 20 C 0.131 3.869 21 C -0.141 4.141 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.094 4.094 25 C -0.110 4.110 26 C -0.094 4.094 27 C -0.097 4.097 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.388 0.612 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.032 0.968 41 H 0.009 0.991 42 H 0.265 0.735 43 H 0.114 0.886 44 H 0.152 0.848 45 H 0.156 0.844 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 -1.941 -3.025 8.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.079 4.079 3 N -0.251 5.251 4 C -0.078 4.078 5 C 0.002 3.998 6 O -0.386 6.386 7 C -0.077 4.077 8 C 0.311 3.689 9 O -0.443 6.443 10 N -0.291 5.291 11 C 0.138 3.862 12 C -0.580 4.580 13 H 0.094 0.906 14 C -0.177 4.177 15 N -0.563 5.563 16 Si 0.774 3.226 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.209 1.209 20 C 0.041 3.959 21 C -0.161 4.161 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.094 4.094 25 C -0.166 4.166 26 C -0.096 4.096 27 C -0.153 4.153 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.236 0.764 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.049 0.951 41 H 0.027 0.973 42 H 0.075 0.925 43 H 0.132 0.868 44 H 0.170 0.830 45 H 0.174 0.826 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.097 0.903 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.908 -2.463 -3.511 9.887 hybrid contribution 1.498 0.978 1.023 2.061 sum -7.410 -1.485 -2.488 7.957 Atomic orbital electron populations 1.21600 0.93593 1.01635 1.01684 1.22153 0.97402 0.88123 1.00178 1.61635 1.15134 1.18609 1.29766 1.22331 1.02617 0.93854 0.88962 1.22237 0.88887 0.94314 0.94386 1.86521 1.48042 1.30662 1.73369 1.21832 0.90447 1.03244 0.92207 1.20744 0.81760 0.76658 0.89782 1.90589 1.38146 1.49840 1.65681 1.45747 1.08314 1.65004 1.10043 1.19135 0.81391 0.95212 0.90414 1.21995 1.12379 0.93714 1.29919 0.90648 1.25613 0.95429 1.02008 0.94637 1.70037 1.16810 1.37435 1.31989 0.85636 0.78090 0.80651 0.78199 1.18909 1.20254 1.20930 1.17764 1.01117 0.92867 0.84108 1.21398 1.02044 0.94402 0.98215 1.21252 1.00000 1.01007 0.91189 1.21355 1.00153 0.91800 1.00518 1.20051 0.99746 0.96239 0.93396 1.20864 1.02929 0.97126 0.95713 1.20185 0.99984 0.96192 0.93190 1.20774 1.01491 0.92195 1.00865 0.91070 0.91973 0.94026 0.92249 0.94265 0.88756 0.92054 0.90883 0.94797 0.76434 0.92125 0.87874 0.95057 0.97286 0.92542 0.86798 0.83011 0.82590 0.90353 0.89381 0.91424 0.91322 0.90290 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 10.01 71.98 0.72 -2.81 16 2 C 0.05 1.57 5.23 86.30 0.45 2.02 16 3 N -0.53 -18.12 4.07 -900.81 -3.67 -21.80 16 4 C 0.05 1.36 5.21 86.30 0.45 1.81 16 5 C 0.08 2.10 7.24 71.98 0.52 2.62 16 6 O -0.58 -16.39 13.61 -148.98 -2.03 -18.42 16 7 C 0.05 2.06 3.83 85.56 0.33 2.38 16 8 C 0.52 22.99 6.53 87.66 0.57 23.56 16 9 O -0.56 -27.13 14.46 -3.07 -0.04 -27.18 16 10 N -0.56 -25.19 1.66 -635.30 -1.06 -26.24 16 11 C 0.26 12.60 4.96 85.63 0.42 13.03 16 12 C -0.54 -27.46 8.64 25.60 0.22 -27.24 16 13 H 0.08 3.80 4.33 -2.91 -0.01 3.79 16 14 C 0.02 1.19 5.46 84.66 0.46 1.65 16 15 N -0.92 -50.30 13.29 21.45 0.28 -50.01 16 16 Si 0.95 40.82 29.54 68.60 2.03 42.85 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.13 5.61 4.44 38.16 0.17 5.78 16 21 C -0.14 -5.31 9.97 22.39 0.22 -5.08 16 22 C -0.12 -3.47 10.04 22.25 0.22 -3.25 16 23 C -0.12 -3.35 9.70 22.29 0.22 -3.14 16 24 C -0.09 -2.98 5.88 -19.88 -0.12 -3.10 16 25 C -0.11 -2.61 9.60 71.24 0.68 -1.92 16 26 C -0.09 -3.72 5.90 -19.74 -0.12 -3.84 16 27 C -0.10 -3.79 7.71 71.24 0.55 -3.24 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.53 6.52 -2.39 -0.02 1.52 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 2.25 5.81 -2.39 -0.01 2.23 16 32 H 0.04 1.10 8.05 -2.39 -0.02 1.08 16 33 H 0.09 2.35 6.25 -2.39 -0.01 2.34 16 34 H 0.06 1.53 8.00 -2.39 -0.02 1.51 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.03 1.00 6.67 -2.38 -0.02 0.99 16 37 H 0.39 7.62 9.12 -74.06 -0.68 6.94 16 38 H 0.06 2.26 7.38 -2.39 -0.02 2.25 16 39 H 0.10 4.19 6.43 -2.39 -0.02 4.18 16 40 H 0.03 1.56 6.44 -2.38 -0.02 1.54 16 41 H 0.01 0.48 8.05 -2.39 -0.02 0.47 16 42 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 43 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 45 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 46 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 48 H 0.07 1.62 5.94 -2.39 -0.01 1.61 16 49 H 0.07 2.81 7.04 -2.39 -0.02 2.80 16 50 H 0.08 2.59 5.95 -2.39 -0.01 2.57 16 51 H 0.04 1.78 6.04 -2.39 -0.01 1.77 16 Total: -1.00 -67.28 399.41 1.76 -65.52 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.27 Total: 36.04 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.98 Total: -0.76 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -4.44 Total: -98.05 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -2.07 Total: -45.59 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -67.28 1.76 -65.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103283302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.921 kcal (2) G-P(sol) polarization free energy of solvation -67.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds