Wall clock time and date at job start Tue Mar 31 2020 18:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47158 * 2 1 4 4 C 1.46501 * 119.99732 * 269.99751 * 3 2 1 5 5 C 1.50700 * 109.47290 * 269.99685 * 4 3 2 6 6 H 1.08006 * 119.99976 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00213 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00309 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47079 * 60.00143 * 9 7 5 11 11 H 1.48496 * 109.47264 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47332 * 300.00612 * 9 7 5 13 13 C 1.34774 * 120.00092 * 89.99873 * 3 2 1 14 14 O 1.21285 * 119.99814 * 180.02562 * 13 3 2 15 15 C 1.50704 * 120.00063 * 0.02562 * 13 3 2 16 16 N 1.46906 * 109.46919 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99472 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.47088 * 59.99997 * 17 16 15 19 19 C 1.53000 * 109.47411 * 299.99650 * 17 16 15 20 20 C 1.50707 * 109.46868 * 179.97438 * 17 16 15 21 21 C 1.38163 * 120.02715 * 359.97438 * 20 17 16 22 22 C 1.38243 * 120.05438 * 180.02562 * 21 20 17 23 23 C 1.38289 * 120.11362 * 359.97438 * 22 21 20 24 24 C 1.38125 * 120.05159 * 0.02562 * 23 22 21 25 25 C 1.38708 * 120.02785 * 180.02562 * 20 17 16 26 26 O 1.35899 * 120.05461 * 359.95420 * 25 20 17 27 27 C 1.42903 * 116.99930 * 180.02562 * 26 25 20 28 28 H 1.09003 * 109.47016 * 300.00272 * 1 2 3 29 29 H 1.08999 * 109.47224 * 60.00383 * 1 2 3 30 30 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47215 * 239.99561 * 2 1 3 32 32 H 1.09004 * 109.46951 * 119.99999 * 2 1 3 33 33 H 1.08995 * 109.47186 * 30.00023 * 4 3 2 34 34 H 1.09007 * 109.46612 * 150.00068 * 4 3 2 35 35 H 0.97003 * 119.99937 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.47256 * 59.99685 * 15 13 3 37 37 H 1.09000 * 109.46686 * 299.99835 * 15 13 3 38 38 H 1.00898 * 110.99359 * 303.94603 * 16 15 13 39 39 H 1.08999 * 109.46937 * 179.97438 * 18 17 16 40 40 H 1.08994 * 109.47091 * 299.99794 * 18 17 16 41 41 H 1.08998 * 109.47126 * 59.99641 * 18 17 16 42 42 H 1.08999 * 109.46896 * 300.00402 * 19 17 16 43 43 H 1.09003 * 109.46746 * 59.99907 * 19 17 16 44 44 H 1.08999 * 109.46869 * 179.97438 * 19 17 16 45 45 H 1.08001 * 119.97024 * 0.03662 * 21 20 17 46 46 H 1.08004 * 119.94070 * 180.02562 * 22 21 20 47 47 H 1.07993 * 119.96940 * 180.28495 * 23 22 21 48 48 H 1.08000 * 120.02364 * 180.02562 * 24 23 22 49 49 H 1.08998 * 109.46876 * 179.97438 * 27 26 25 50 50 H 1.08998 * 109.47294 * 300.00489 * 27 26 25 51 51 H 1.08995 * 109.47056 * 60.00501 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3491 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4175 10 1 6.1403 0.6386 -3.5947 11 1 6.1604 2.7945 -4.7041 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2063 3.5889 17 6 2.0763 1.5461 4.8802 18 6 2.9622 0.3030 4.9850 19 6 0.6062 1.1349 4.9844 20 6 2.4127 2.4979 5.9991 21 6 2.8636 3.7718 5.7111 22 6 3.1728 4.6452 6.7371 23 6 3.0313 4.2468 8.0538 24 6 2.5809 2.9744 8.3469 25 6 2.2708 2.0956 7.3190 26 8 1.8276 0.8431 7.6048 27 6 1.7054 0.4976 8.9860 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 3.6750 3.5153 -4.4445 36 1 2.6227 0.4187 2.5299 37 1 0.9444 1.0115 2.5302 38 1 3.2579 2.5450 3.5218 39 1 2.7892 -0.1866 5.9434 40 1 2.7194 -0.3855 4.1758 41 1 4.0095 0.5960 4.9108 42 1 -0.0248 2.0205 4.9096 43 1 0.3634 0.4464 4.1750 44 1 0.4332 0.6446 5.9423 45 1 2.9744 4.0854 4.6836 46 1 3.5247 5.6407 6.5099 47 1 3.2691 4.9326 8.8534 48 1 2.4701 2.6639 9.3753 49 1 1.3425 -0.5264 9.0736 50 1 2.6789 0.5812 9.4690 51 1 1.0009 1.1748 9.4689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103483849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:00 Heat of formation + Delta-G solvation = -37.841132 kcal Electronic energy + Delta-G solvation = -29757.476187 eV Core-core repulsion = 25850.640544 eV Total energy + Delta-G solvation = -3906.835643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.71752 -39.15481 -37.86121 -36.84404 -35.17383 -32.82785 -31.93124 -30.43952 -30.03632 -29.44931 -27.86031 -27.40848 -27.25851 -25.65117 -23.14445 -22.93901 -22.27197 -21.84013 -19.56152 -18.59892 -18.00244 -16.82934 -16.38394 -16.32940 -15.98973 -15.78607 -15.39756 -15.21276 -14.53235 -14.46451 -14.26332 -13.94566 -13.85666 -13.68009 -13.35230 -13.24784 -12.94277 -12.67461 -12.53328 -12.24023 -12.13547 -12.03091 -11.94391 -11.71354 -11.65926 -11.48460 -11.21899 -11.17174 -11.12129 -11.00741 -10.87341 -10.68364 -10.54985 -10.46435 -10.09317 -9.60649 -8.93988 -8.83343 -8.39733 -8.33972 -8.12704 -7.58591 -6.00554 -4.05231 1.25211 1.35986 3.06834 3.33601 3.38096 3.40409 3.53742 3.67875 3.78851 4.35862 4.48925 4.53977 4.70766 4.81961 4.85970 4.96812 5.02355 5.10581 5.16003 5.24017 5.24684 5.33242 5.34592 5.37799 5.49136 5.59399 5.65817 5.67107 5.72771 5.74536 5.83666 5.86461 5.92911 5.98032 6.07777 6.16562 6.22937 6.27741 6.32938 6.35064 6.50086 6.53363 6.73162 7.03243 7.21867 7.23662 7.49212 7.52499 7.62293 7.96473 8.28324 8.51298 8.94876 9.19627 9.59821 11.07400 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002742 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.462158 B =10208.476161 C =11080.290277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.530 6.530 15 C 0.037 3.963 16 N -0.662 5.662 17 C 0.162 3.838 18 C -0.181 4.181 19 C -0.137 4.137 20 C -0.099 4.099 21 C -0.065 4.065 22 C -0.156 4.156 23 C -0.088 4.088 24 C -0.213 4.213 25 C 0.130 3.870 26 O -0.309 6.309 27 C 0.025 3.975 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.351 0.649 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.145 0.855 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.097 0.903 50 H 0.053 0.947 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -6.975 24.963 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.406 6.406 15 C -0.095 4.095 16 N -0.295 5.295 17 C 0.071 3.929 18 C -0.240 4.240 19 C -0.194 4.194 20 C -0.100 4.100 21 C -0.083 4.083 22 C -0.174 4.174 23 C -0.106 4.106 24 C -0.231 4.231 25 C 0.085 3.915 26 O -0.222 6.222 27 C -0.070 4.070 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.171 0.829 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.163 0.837 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.142 0.858 49 H 0.116 0.884 50 H 0.071 0.929 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.655 -6.093 24.609 25.975 hybrid contribution 1.759 -0.728 -0.054 1.905 sum -3.896 -6.821 24.555 25.781 Atomic orbital electron populations 1.22225 0.96840 1.01306 1.02393 1.21392 0.93501 0.84371 1.02477 1.48236 1.64131 1.13157 1.07711 1.19233 0.96076 0.93678 0.78163 1.21402 0.96994 1.31823 1.06193 0.92646 1.24929 0.97762 0.94975 0.96428 1.69927 1.35688 1.33462 1.14331 0.86577 0.84930 0.78185 0.77816 1.20324 1.21198 1.20210 1.20213 0.78781 0.87062 0.84894 1.90663 1.45217 1.17752 1.86992 1.21989 1.02553 0.94721 0.90237 1.60398 1.32350 1.37138 0.99587 1.19555 0.95954 0.90382 0.87053 1.22576 0.99653 0.98621 1.03122 1.21898 0.93980 1.01481 1.02078 1.19119 1.04327 0.95785 0.90789 1.21148 0.94812 0.91647 1.00687 1.21129 1.03403 1.00344 0.92555 1.20915 0.97758 0.95193 0.96741 1.21117 1.08176 0.95637 0.98204 1.18733 0.95540 0.84144 0.93086 1.86139 1.81124 1.28409 1.26575 1.23033 1.01216 1.01652 0.81145 0.93007 0.92033 0.92276 0.90061 0.91974 0.95134 0.93901 0.92705 0.92615 0.88483 0.82868 0.90719 0.92146 0.92873 0.92032 0.92499 0.91122 0.83689 0.85877 0.86176 0.85805 0.88432 0.92876 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.75 2.46 -175.06 -0.43 -13.18 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 C 0.50 10.59 7.71 -10.98 -0.08 10.51 16 14 O -0.53 -13.44 15.78 5.55 0.09 -13.35 16 15 C 0.04 0.57 3.93 -4.97 -0.02 0.55 16 16 N -0.66 -9.87 4.73 -102.39 -0.48 -10.36 16 17 C 0.16 2.01 0.69 -132.75 -0.09 1.92 16 18 C -0.18 -2.08 8.01 37.16 0.30 -1.78 16 19 C -0.14 -1.59 8.02 37.16 0.30 -1.29 16 20 C -0.10 -1.24 4.78 -104.47 -0.50 -1.74 16 21 C -0.06 -0.82 9.14 -39.61 -0.36 -1.19 16 22 C -0.16 -1.72 10.04 -39.56 -0.40 -2.12 16 23 C -0.09 -0.86 10.04 -39.60 -0.40 -1.26 16 24 C -0.21 -2.07 9.04 -39.43 -0.36 -2.43 16 25 C 0.13 1.44 6.28 -39.22 -0.25 1.20 16 26 O -0.31 -2.99 6.16 -19.42 -0.12 -3.11 16 27 C 0.02 0.15 9.81 101.05 0.99 1.14 16 28 H 0.05 0.68 7.22 -51.93 -0.38 0.30 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.06 0.78 5.57 -51.93 -0.29 0.50 16 37 H 0.10 1.35 5.35 -51.93 -0.28 1.07 16 38 H 0.35 5.56 7.25 -39.29 -0.28 5.27 16 39 H 0.07 0.81 6.14 -51.93 -0.32 0.49 16 40 H 0.06 0.67 6.40 -51.93 -0.33 0.33 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16 44 H 0.07 0.76 6.14 -51.93 -0.32 0.44 16 45 H 0.15 2.00 6.40 -52.49 -0.34 1.66 16 46 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.91 6.30 -52.49 -0.33 0.58 16 49 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 51 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -33.64 398.40 -8.24 -41.88 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.05 Total: 5.09 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.96 Total: -3.87 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.18 Total: -49.67 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.03 Total: -16.46 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.64 -8.24 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103483849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.040 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds