Wall clock time and date at job start Tue Mar 31 2020 18:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47158 * 2 1 4 4 C 1.46501 * 119.99732 * 269.99751 * 3 2 1 5 5 C 1.50700 * 109.47290 * 269.99685 * 4 3 2 6 6 H 1.08006 * 119.99976 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00213 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00309 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47079 * 60.00143 * 9 7 5 11 11 H 1.48496 * 109.47264 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47332 * 300.00612 * 9 7 5 13 13 C 1.34774 * 120.00092 * 89.99873 * 3 2 1 14 14 O 1.21285 * 119.99814 * 180.02562 * 13 3 2 15 15 C 1.50704 * 120.00063 * 0.02562 * 13 3 2 16 16 N 1.46906 * 109.46919 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99472 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.47088 * 59.99997 * 17 16 15 19 19 C 1.53000 * 109.47411 * 299.99650 * 17 16 15 20 20 C 1.50707 * 109.46868 * 179.97438 * 17 16 15 21 21 C 1.38163 * 120.02715 * 359.97438 * 20 17 16 22 22 C 1.38243 * 120.05438 * 180.02562 * 21 20 17 23 23 C 1.38289 * 120.11362 * 359.97438 * 22 21 20 24 24 C 1.38125 * 120.05159 * 0.02562 * 23 22 21 25 25 C 1.38708 * 120.02785 * 180.02562 * 20 17 16 26 26 O 1.35899 * 120.05461 * 359.95420 * 25 20 17 27 27 C 1.42903 * 116.99930 * 180.02562 * 26 25 20 28 28 H 1.09003 * 109.47016 * 300.00272 * 1 2 3 29 29 H 1.08999 * 109.47224 * 60.00383 * 1 2 3 30 30 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47215 * 239.99561 * 2 1 3 32 32 H 1.09004 * 109.46951 * 119.99999 * 2 1 3 33 33 H 1.08995 * 109.47186 * 30.00023 * 4 3 2 34 34 H 1.09007 * 109.46612 * 150.00068 * 4 3 2 35 35 H 0.97003 * 119.99937 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.47256 * 59.99685 * 15 13 3 37 37 H 1.09000 * 109.46686 * 299.99835 * 15 13 3 38 38 H 1.00898 * 110.99359 * 303.94603 * 16 15 13 39 39 H 1.08999 * 109.46937 * 179.97438 * 18 17 16 40 40 H 1.08994 * 109.47091 * 299.99794 * 18 17 16 41 41 H 1.08998 * 109.47126 * 59.99641 * 18 17 16 42 42 H 1.08999 * 109.46896 * 300.00402 * 19 17 16 43 43 H 1.09003 * 109.46746 * 59.99907 * 19 17 16 44 44 H 1.08999 * 109.46869 * 179.97438 * 19 17 16 45 45 H 1.08001 * 119.97024 * 0.03662 * 21 20 17 46 46 H 1.08004 * 119.94070 * 180.02562 * 22 21 20 47 47 H 1.07993 * 119.96940 * 180.28495 * 23 22 21 48 48 H 1.08000 * 120.02364 * 180.02562 * 24 23 22 49 49 H 1.08998 * 109.46876 * 179.97438 * 27 26 25 50 50 H 1.08998 * 109.47294 * 300.00489 * 27 26 25 51 51 H 1.08995 * 109.47056 * 60.00501 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3491 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4175 10 1 6.1403 0.6386 -3.5947 11 1 6.1604 2.7945 -4.7041 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2063 3.5889 17 6 2.0763 1.5461 4.8802 18 6 2.9622 0.3030 4.9850 19 6 0.6062 1.1349 4.9844 20 6 2.4127 2.4979 5.9991 21 6 2.8636 3.7718 5.7111 22 6 3.1728 4.6452 6.7371 23 6 3.0313 4.2468 8.0538 24 6 2.5809 2.9744 8.3469 25 6 2.2708 2.0956 7.3190 26 8 1.8276 0.8431 7.6048 27 6 1.7054 0.4976 8.9860 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 3.6750 3.5153 -4.4445 36 1 2.6227 0.4187 2.5299 37 1 0.9444 1.0115 2.5302 38 1 3.2579 2.5450 3.5218 39 1 2.7892 -0.1866 5.9434 40 1 2.7194 -0.3855 4.1758 41 1 4.0095 0.5960 4.9108 42 1 -0.0248 2.0205 4.9096 43 1 0.3634 0.4464 4.1750 44 1 0.4332 0.6446 5.9423 45 1 2.9744 4.0854 4.6836 46 1 3.5247 5.6407 6.5099 47 1 3.2691 4.9326 8.8534 48 1 2.4701 2.6639 9.3753 49 1 1.3425 -0.5264 9.0736 50 1 2.6789 0.5812 9.4690 51 1 1.0009 1.1748 9.4689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103483849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:59 Heat of formation + Delta-G solvation = -58.925985 kcal Electronic energy + Delta-G solvation = -29758.390495 eV Core-core repulsion = 25850.640544 eV Total energy + Delta-G solvation = -3907.749951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.55603 -40.67553 -38.78545 -37.77083 -36.87240 -34.91693 -33.08450 -31.57406 -31.25485 -30.33034 -29.42720 -28.21493 -28.12944 -27.13588 -24.79714 -24.14853 -23.46909 -22.75929 -20.53411 -20.01884 -18.95172 -18.60319 -18.04754 -17.36557 -17.05835 -16.87594 -16.59929 -16.42304 -16.18867 -15.36634 -15.26130 -15.22787 -15.01938 -14.66666 -14.51831 -14.47057 -14.20340 -14.03500 -13.73314 -13.50554 -13.28803 -13.22199 -13.11228 -12.99590 -12.72590 -12.63977 -12.57280 -12.49413 -12.45332 -12.19704 -12.11352 -11.97766 -11.86749 -11.81899 -11.72175 -11.36546 -10.63739 -10.54653 -9.77492 -9.42435 -9.37438 -8.99812 -8.21374 -6.36527 0.42611 0.54316 1.35909 1.40435 1.47724 1.88712 2.25269 2.41708 2.44234 2.85266 3.07611 3.18172 3.65815 3.75006 4.00733 4.09994 4.12270 4.13621 4.24125 4.33123 4.36539 4.39423 4.47892 4.48375 4.49634 4.60476 4.67126 4.75968 4.79945 4.82549 4.86310 4.93464 4.97391 5.00475 5.01753 5.06856 5.14811 5.23475 5.27184 5.35648 5.40050 5.44309 5.52777 5.59163 5.65825 5.87318 5.91102 6.07647 6.10548 6.31176 6.52847 6.71610 6.85286 7.29634 7.54455 8.85468 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002742 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.462158 B =10208.476161 C =11080.290277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.495 3.505 14 O -0.586 6.586 15 C 0.056 3.944 16 N -0.675 5.675 17 C 0.164 3.836 18 C -0.175 4.175 19 C -0.133 4.133 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.169 4.169 23 C -0.087 4.087 24 C -0.212 4.212 25 C 0.128 3.872 26 O -0.319 6.319 27 C 0.015 3.985 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.021 0.979 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.341 0.659 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.131 0.869 47 H 0.148 0.852 48 H 0.152 0.848 49 H 0.117 0.883 50 H 0.062 0.938 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 -9.549 27.530 29.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.283 3.717 14 O -0.466 6.466 15 C -0.076 4.076 16 N -0.307 5.307 17 C 0.073 3.927 18 C -0.233 4.233 19 C -0.190 4.190 20 C -0.120 4.120 21 C -0.105 4.105 22 C -0.187 4.187 23 C -0.104 4.104 24 C -0.230 4.230 25 C 0.082 3.918 26 O -0.233 6.233 27 C -0.079 4.079 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.038 0.962 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.140 0.860 46 H 0.149 0.851 47 H 0.165 0.835 48 H 0.169 0.831 49 H 0.135 0.865 50 H 0.080 0.920 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.543 -8.728 27.203 29.102 hybrid contribution 1.660 0.079 -0.763 1.828 sum -3.884 -8.649 26.440 28.089 Atomic orbital electron populations 1.22157 0.94623 1.03510 1.01631 1.21739 0.95308 0.81399 1.03824 1.48265 1.64173 1.15065 1.06148 1.18663 0.95227 0.91424 0.80468 1.21680 0.97874 1.31982 1.06501 0.92878 1.25873 1.02420 0.94483 0.96445 1.70056 1.37848 1.34228 1.14780 0.85470 0.78984 0.79030 0.77334 1.18402 1.20352 1.20345 1.21251 0.77338 0.86651 0.86449 1.90630 1.47638 1.20415 1.87915 1.21874 1.04205 0.94405 0.87070 1.60401 1.31876 1.37839 1.00624 1.19616 0.96710 0.90669 0.85657 1.22513 0.98759 0.98128 1.03927 1.21874 0.92949 1.01055 1.03124 1.19187 1.05389 0.95720 0.91724 1.21068 0.96552 0.92712 1.00136 1.21304 1.03734 1.00587 0.93078 1.21246 0.96699 0.95810 0.96687 1.21467 1.07022 0.95255 0.99297 1.18768 0.95263 0.85012 0.92710 1.86103 1.80785 1.27506 1.28901 1.23327 1.02157 1.02987 0.79410 0.92240 0.94364 0.88493 0.90963 0.88330 0.96150 0.98806 0.92430 0.90357 0.86221 0.83914 0.89789 0.91341 0.93890 0.93546 0.91448 0.89993 0.85993 0.85115 0.83469 0.83055 0.86489 0.91954 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.24 71.98 0.74 -3.34 16 2 C 0.10 3.08 5.93 86.38 0.51 3.60 16 3 N -0.60 -26.28 2.46 -826.16 -2.03 -28.31 16 4 C 0.26 14.67 5.16 85.63 0.44 15.11 16 5 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 9 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.49 21.30 7.71 87.66 0.68 21.98 16 14 O -0.59 -31.50 15.78 -3.04 -0.05 -31.55 16 15 C 0.06 1.67 3.93 85.56 0.34 2.01 16 16 N -0.67 -20.39 4.73 -477.84 -2.26 -22.65 16 17 C 0.16 3.94 0.69 2.78 0.00 3.94 16 18 C -0.17 -3.69 8.01 71.98 0.58 -3.12 16 19 C -0.13 -2.85 8.02 71.98 0.58 -2.27 16 20 C -0.12 -2.94 4.78 -19.77 -0.09 -3.03 16 21 C -0.09 -2.29 9.14 22.25 0.20 -2.09 16 22 C -0.17 -3.74 10.04 22.28 0.22 -3.51 16 23 C -0.09 -1.54 10.04 22.25 0.22 -1.32 16 24 C -0.21 -3.63 9.04 22.36 0.20 -3.43 16 25 C 0.13 2.62 6.28 22.50 0.14 2.77 16 26 O -0.32 -5.35 6.16 -92.41 -0.57 -5.92 16 27 C 0.02 0.13 9.81 113.37 1.11 1.25 16 28 H 0.06 1.42 7.22 -2.39 -0.02 1.40 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.10 2.34 6.44 -2.38 -0.02 2.33 16 33 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 34 H -0.01 -0.40 7.42 -2.38 -0.02 -0.42 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.08 2.01 5.57 -2.39 -0.01 1.99 16 37 H 0.12 3.04 5.35 -2.39 -0.01 3.03 16 38 H 0.34 11.39 7.25 -89.70 -0.65 10.74 16 39 H 0.08 1.62 6.14 -2.39 -0.01 1.61 16 40 H 0.07 1.31 6.40 -2.39 -0.02 1.29 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.27 6.40 -2.39 -0.02 1.26 16 44 H 0.08 1.57 6.14 -2.39 -0.01 1.56 16 45 H 0.12 3.71 6.40 -2.91 -0.02 3.69 16 46 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 47 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 48 H 0.15 1.67 6.30 -2.91 -0.02 1.66 16 49 H 0.12 0.56 8.14 -2.39 -0.02 0.55 16 50 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 51 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 Total: -1.00 -77.64 398.40 4.27 -73.37 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.28 Total: 26.83 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.57 Total: -2.28 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -4.00 Total: -108.16 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.62 Total: -37.47 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -77.64 4.27 -73.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103483849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.448 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds