Wall clock time and date at job start Tue Mar 31 2020 19:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46868 * 2 1 4 4 C 1.35902 * 116.99566 * 179.97438 * 3 2 1 5 5 C 1.38750 * 120.06007 * 359.97438 * 4 3 2 6 6 C 1.38128 * 119.94751 * 180.02562 * 5 4 3 7 7 C 1.38290 * 120.05116 * 0.02562 * 6 5 4 8 8 C 1.38247 * 120.11396 * 359.95442 * 7 6 5 9 9 C 1.50696 * 119.96891 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47073 * 160.00239 * 9 8 7 11 11 C 1.53002 * 109.47214 * 279.99870 * 9 8 7 12 12 N 1.46903 * 109.47373 * 40.00081 * 9 8 7 13 13 C 1.46898 * 110.99778 * 153.35071 * 12 9 8 14 14 H 1.08993 * 109.47403 * 31.65928 * 13 12 9 15 15 C 1.53003 * 109.46973 * 151.65842 * 13 12 9 16 16 C 1.50702 * 109.47061 * 271.65474 * 13 12 9 17 17 O 1.21278 * 120.00066 * 0.02562 * 16 13 12 18 18 N 1.34778 * 119.99953 * 180.02562 * 16 13 12 19 19 C 1.46508 * 119.99942 * 359.97438 * 18 16 13 20 20 C 1.46501 * 120.00147 * 180.02562 * 18 16 13 21 21 C 1.50698 * 109.46717 * 269.99651 * 20 18 16 22 22 H 1.07994 * 120.00285 * 0.02562 * 21 20 18 23 23 C 1.37877 * 119.99752 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99940 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00073 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46869 * 60.00299 * 25 23 21 27 27 H 1.48503 * 109.47111 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47079 * 300.00064 * 25 23 21 29 29 C 1.38159 * 120.05564 * 0.27731 * 8 7 6 30 30 H 1.09000 * 109.46721 * 60.00666 * 1 2 3 31 31 H 1.08996 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47260 * 300.00184 * 1 2 3 33 33 H 1.08992 * 109.47563 * 239.99112 * 2 1 3 34 34 H 1.09000 * 109.46721 * 119.99334 * 2 1 3 35 35 H 1.08001 * 120.02873 * 359.97438 * 5 4 3 36 36 H 1.07996 * 119.97359 * 179.97438 * 6 5 4 37 37 H 1.08000 * 119.93748 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.46954 * 298.69295 * 11 9 8 39 39 H 1.09003 * 109.46786 * 58.69072 * 11 9 8 40 40 H 1.09001 * 109.47365 * 178.69118 * 11 9 8 41 41 H 1.00904 * 110.99657 * 277.30485 * 12 9 8 42 42 H 1.09000 * 109.47193 * 187.59233 * 15 13 12 43 43 H 1.09007 * 109.47172 * 307.59250 * 15 13 12 44 44 H 1.08997 * 109.47492 * 67.58833 * 15 13 12 45 45 H 1.09005 * 109.46727 * 90.00342 * 19 18 16 46 46 H 1.08999 * 109.47034 * 209.99971 * 19 18 16 47 47 H 1.08994 * 109.47147 * 330.00686 * 19 18 16 48 48 H 1.09001 * 109.46768 * 29.99213 * 20 18 16 49 49 H 1.08996 * 109.46995 * 149.99902 * 20 18 16 50 50 H 0.97003 * 119.99868 * 180.02562 * 24 23 21 51 51 H 1.07994 * 120.02861 * 179.74212 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5690 0.6094 0.0027 7 6 6.0962 1.8879 0.0032 8 6 5.2551 2.9850 0.0018 9 6 5.8332 4.3767 0.0018 10 1 5.0811 5.0825 -0.3508 11 6 6.2585 4.7523 1.4227 12 7 7.0018 4.4216 -0.8871 13 6 7.2099 5.7766 -1.4150 14 1 6.8797 6.5084 -0.6779 15 6 8.6964 5.9859 -1.7110 16 6 6.4159 5.9485 -2.6843 17 8 5.7427 5.0327 -3.1072 18 7 6.4541 7.1201 -3.3495 19 6 7.2670 8.2266 -2.8383 20 6 5.6818 7.2875 -4.5832 21 6 6.5254 6.8790 -5.7632 22 1 7.5356 6.5293 -5.6096 23 6 6.0073 6.9508 -7.0388 24 7 4.7770 7.3762 -7.2259 25 14 7.0532 6.4452 -8.5017 26 1 7.4527 5.0223 -8.3563 27 1 6.2699 6.6136 -9.7521 28 1 8.2681 7.2970 -8.5595 29 6 3.8851 2.8066 0.0055 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.7887 -0.5728 0.0024 36 1 6.2281 -0.2461 0.0039 37 1 7.1669 2.0293 0.0045 38 1 5.3872 4.7416 2.0775 39 1 6.9934 4.0329 1.7841 40 1 6.6979 5.7498 1.4188 41 1 7.8283 4.0865 -0.4150 42 1 8.8712 7.0292 -1.9737 43 1 9.2822 5.7304 -0.8280 44 1 8.9949 5.3470 -2.5422 45 1 8.2708 8.1643 -3.2586 46 1 6.8114 9.1746 -3.1246 47 1 7.3235 8.1640 -1.7517 48 1 4.7896 6.6628 -4.5408 49 1 5.3894 8.3321 -4.6898 50 1 4.4123 7.4264 -8.1233 51 1 3.2284 3.6640 0.0086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112537316.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:30 Heat of formation + Delta-G solvation = -40.591251 kcal Electronic energy + Delta-G solvation = -29247.133589 eV Core-core repulsion = 25340.178692 eV Total energy + Delta-G solvation = -3906.954897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.21953 -39.32780 -38.01626 -36.10690 -34.66442 -33.08474 -32.25313 -32.10351 -30.11232 -29.09072 -28.25501 -27.31610 -25.95741 -24.41784 -23.89416 -22.74035 -22.55232 -21.70721 -20.33502 -18.26869 -17.88516 -16.52999 -16.39875 -16.19259 -16.09948 -15.95130 -15.47150 -15.08305 -14.69968 -14.29960 -14.11361 -13.94863 -13.54486 -13.42792 -13.40017 -13.13684 -12.90771 -12.80177 -12.73206 -12.31936 -12.17927 -12.02204 -11.93544 -11.80626 -11.72514 -11.47456 -11.38318 -11.25858 -11.14593 -10.94050 -10.80510 -10.77598 -10.61203 -10.48065 -10.07141 -9.56017 -8.92681 -8.71164 -8.36499 -8.08802 -8.07893 -7.51244 -5.97318 -4.01452 1.42150 1.58609 3.12947 3.36146 3.40545 3.43442 3.58214 3.79072 3.95490 4.37397 4.51896 4.70724 4.72145 4.77937 4.94173 4.99994 5.02383 5.09378 5.13851 5.18767 5.23948 5.27664 5.31386 5.36988 5.43492 5.49850 5.57484 5.59377 5.62366 5.72326 5.76540 5.81709 5.85739 5.89060 5.97463 6.00203 6.08722 6.17688 6.32289 6.37945 6.52674 6.65064 6.86774 7.02011 7.19434 7.45541 7.46705 7.54274 7.66284 7.99914 8.31824 8.55552 8.99191 9.29234 9.63542 11.10699 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.003032 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.316007 B = 9233.845074 C =10824.537564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.318 6.318 4 C 0.128 3.872 5 C -0.216 4.216 6 C -0.084 4.084 7 C -0.133 4.133 8 C -0.015 4.015 9 C 0.126 3.874 10 H 0.088 0.912 11 C -0.177 4.177 12 N -0.655 5.655 13 C 0.069 3.931 14 H 0.063 0.937 15 C -0.160 4.160 16 C 0.506 3.494 17 O -0.514 6.514 18 N -0.608 5.608 19 C 0.085 3.915 20 C 0.248 3.752 21 C -0.522 4.522 22 H 0.056 0.944 23 C 0.060 3.940 24 N -0.896 5.896 25 Si 0.897 3.103 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.277 1.277 29 C -0.143 4.143 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.342 0.658 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.042 0.958 49 H 0.030 0.970 50 H 0.263 0.737 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 -9.164 21.151 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.083 3.917 5 C -0.234 4.234 6 C -0.102 4.102 7 C -0.152 4.152 8 C -0.015 4.015 9 C 0.016 3.984 10 H 0.106 0.894 11 C -0.236 4.236 12 N -0.287 5.287 13 C -0.044 4.044 14 H 0.081 0.919 15 C -0.217 4.217 16 C 0.290 3.710 17 O -0.388 6.388 18 N -0.342 5.342 19 C -0.059 4.059 20 C 0.129 3.871 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.142 4.142 24 N -0.536 5.536 25 Si 0.725 3.275 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.203 1.203 29 C -0.162 4.162 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.162 0.838 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.323 -9.685 20.200 22.404 hybrid contribution 1.022 -0.012 -0.275 1.058 sum 1.345 -9.697 19.925 22.201 Atomic orbital electron populations 1.21774 0.92885 1.02672 1.03614 1.22733 0.95764 0.82277 1.01205 1.86067 1.19299 1.28959 1.88846 1.18866 0.82022 0.94039 0.96751 1.21127 0.94495 0.97612 1.10200 1.20859 0.94180 0.97186 0.97998 1.20744 0.99680 0.91659 1.03073 1.19422 0.91911 0.94881 0.95319 1.20442 0.93611 0.93779 0.90526 0.89369 1.22511 1.02239 1.01458 0.97380 1.59984 1.06178 1.22900 1.39648 1.21471 0.96537 0.90308 0.96054 0.91921 1.22144 0.93039 1.04055 1.02510 1.20206 0.82792 0.82755 0.85207 1.90683 1.41067 1.39292 1.67741 1.48136 1.47534 1.11751 1.26784 1.21732 0.95812 0.91017 0.97324 1.19242 0.91728 0.97128 0.79047 1.21398 0.99832 1.43806 0.91098 0.92604 1.24933 0.95074 0.95262 0.98894 1.69924 1.14422 1.46990 1.22231 0.86578 0.80091 0.79258 0.81600 1.20183 1.21226 1.20317 1.20216 0.94650 0.94838 1.06501 0.91353 0.90531 0.91617 0.92083 0.92314 0.86040 0.86150 0.86126 0.91693 0.92092 0.92283 0.83806 0.90214 0.92317 0.91126 0.93136 0.91686 0.92804 0.94006 0.95232 0.92754 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.54 5.46 37.16 0.20 0.74 16 3 O -0.32 -4.34 10.14 -19.43 -0.20 -4.54 16 4 C 0.13 1.84 6.69 -39.21 -0.26 1.58 16 5 C -0.22 -2.71 9.04 -39.43 -0.36 -3.07 16 6 C -0.08 -1.03 10.04 -39.60 -0.40 -1.42 16 7 C -0.13 -1.74 9.32 -39.56 -0.37 -2.11 16 8 C -0.01 -0.21 4.95 -104.65 -0.52 -0.73 16 9 C 0.13 1.69 2.53 -68.86 -0.17 1.51 16 10 H 0.09 1.36 7.60 -51.93 -0.39 0.97 16 11 C -0.18 -1.71 9.12 37.16 0.34 -1.37 16 12 N -0.66 -9.34 5.00 -102.17 -0.51 -9.85 16 13 C 0.07 1.03 2.02 -68.86 -0.14 0.90 16 14 H 0.06 0.81 6.49 -51.93 -0.34 0.47 16 15 C -0.16 -1.99 8.79 37.16 0.33 -1.66 16 16 C 0.51 10.79 6.97 -10.98 -0.08 10.71 16 17 O -0.51 -13.59 15.96 5.56 0.09 -13.50 16 18 N -0.61 -13.11 2.86 -182.95 -0.52 -13.64 16 19 C 0.09 1.35 8.83 59.85 0.53 1.88 16 20 C 0.25 6.67 5.20 -5.19 -0.03 6.64 16 21 C -0.52 -15.22 9.39 -34.44 -0.32 -15.54 16 22 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 25 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 29 C -0.14 -2.16 9.61 -39.43 -0.38 -2.54 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 35 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.38 7.30 -52.49 -0.38 0.99 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.52 7.59 -51.93 -0.39 0.12 16 41 H 0.34 3.89 7.34 -39.29 -0.29 3.60 16 42 H 0.08 0.93 4.77 -51.93 -0.25 0.68 16 43 H 0.06 0.55 7.96 -51.92 -0.41 0.13 16 44 H 0.07 1.04 8.13 -51.93 -0.42 0.61 16 45 H 0.05 0.76 7.12 -51.93 -0.37 0.39 16 46 H 0.06 1.00 7.89 -51.93 -0.41 0.59 16 47 H 0.05 0.66 5.92 -51.93 -0.31 0.35 16 48 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 49 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 50 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 51 H 0.13 1.87 8.04 -52.49 -0.42 1.44 16 LS Contribution 409.79 15.07 6.18 6.18 Total: -1.00 -36.16 409.79 -8.98 -45.14 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.39 Total: 3.00 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.34 Total: -3.62 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.30 Total: -50.06 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.11 Total: -18.04 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.16 -8.98 -45.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112537316.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.554 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds