Wall clock time and date at job start Tue Mar 31 2020 19:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46868 * 2 1 4 4 C 1.35902 * 116.99566 * 179.97438 * 3 2 1 5 5 C 1.38750 * 120.06007 * 359.97438 * 4 3 2 6 6 C 1.38128 * 119.94751 * 180.02562 * 5 4 3 7 7 C 1.38290 * 120.05116 * 0.02562 * 6 5 4 8 8 C 1.38247 * 120.11396 * 359.95442 * 7 6 5 9 9 C 1.50696 * 119.96891 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47073 * 160.00239 * 9 8 7 11 11 C 1.53002 * 109.47214 * 279.99870 * 9 8 7 12 12 N 1.46903 * 109.47373 * 40.00081 * 9 8 7 13 13 C 1.46898 * 110.99778 * 153.35071 * 12 9 8 14 14 H 1.08993 * 109.47403 * 31.65928 * 13 12 9 15 15 C 1.53003 * 109.46973 * 151.65842 * 13 12 9 16 16 C 1.50702 * 109.47061 * 271.65474 * 13 12 9 17 17 O 1.21278 * 120.00066 * 0.02562 * 16 13 12 18 18 N 1.34778 * 119.99953 * 180.02562 * 16 13 12 19 19 C 1.46508 * 119.99942 * 359.97438 * 18 16 13 20 20 C 1.46501 * 120.00147 * 180.02562 * 18 16 13 21 21 C 1.50698 * 109.46717 * 269.99651 * 20 18 16 22 22 H 1.07994 * 120.00285 * 0.02562 * 21 20 18 23 23 C 1.37877 * 119.99752 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99940 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00073 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46869 * 60.00299 * 25 23 21 27 27 H 1.48503 * 109.47111 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47079 * 300.00064 * 25 23 21 29 29 C 1.38159 * 120.05564 * 0.27731 * 8 7 6 30 30 H 1.09000 * 109.46721 * 60.00666 * 1 2 3 31 31 H 1.08996 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47260 * 300.00184 * 1 2 3 33 33 H 1.08992 * 109.47563 * 239.99112 * 2 1 3 34 34 H 1.09000 * 109.46721 * 119.99334 * 2 1 3 35 35 H 1.08001 * 120.02873 * 359.97438 * 5 4 3 36 36 H 1.07996 * 119.97359 * 179.97438 * 6 5 4 37 37 H 1.08000 * 119.93748 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.46954 * 298.69295 * 11 9 8 39 39 H 1.09003 * 109.46786 * 58.69072 * 11 9 8 40 40 H 1.09001 * 109.47365 * 178.69118 * 11 9 8 41 41 H 1.00904 * 110.99657 * 277.30485 * 12 9 8 42 42 H 1.09000 * 109.47193 * 187.59233 * 15 13 12 43 43 H 1.09007 * 109.47172 * 307.59250 * 15 13 12 44 44 H 1.08997 * 109.47492 * 67.58833 * 15 13 12 45 45 H 1.09005 * 109.46727 * 90.00342 * 19 18 16 46 46 H 1.08999 * 109.47034 * 209.99971 * 19 18 16 47 47 H 1.08994 * 109.47147 * 330.00686 * 19 18 16 48 48 H 1.09001 * 109.46768 * 29.99213 * 20 18 16 49 49 H 1.08996 * 109.46995 * 149.99902 * 20 18 16 50 50 H 0.97003 * 119.99868 * 180.02562 * 24 23 21 51 51 H 1.07994 * 120.02861 * 179.74212 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5690 0.6094 0.0027 7 6 6.0962 1.8879 0.0032 8 6 5.2551 2.9850 0.0018 9 6 5.8332 4.3767 0.0018 10 1 5.0811 5.0825 -0.3508 11 6 6.2585 4.7523 1.4227 12 7 7.0018 4.4216 -0.8871 13 6 7.2099 5.7766 -1.4150 14 1 6.8797 6.5084 -0.6779 15 6 8.6964 5.9859 -1.7110 16 6 6.4159 5.9485 -2.6843 17 8 5.7427 5.0327 -3.1072 18 7 6.4541 7.1201 -3.3495 19 6 7.2670 8.2266 -2.8383 20 6 5.6818 7.2875 -4.5832 21 6 6.5254 6.8790 -5.7632 22 1 7.5356 6.5293 -5.6096 23 6 6.0073 6.9508 -7.0388 24 7 4.7770 7.3762 -7.2259 25 14 7.0532 6.4452 -8.5017 26 1 7.4527 5.0223 -8.3563 27 1 6.2699 6.6136 -9.7521 28 1 8.2681 7.2970 -8.5595 29 6 3.8851 2.8066 0.0055 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.7887 -0.5728 0.0024 36 1 6.2281 -0.2461 0.0039 37 1 7.1669 2.0293 0.0045 38 1 5.3872 4.7416 2.0775 39 1 6.9934 4.0329 1.7841 40 1 6.6979 5.7498 1.4188 41 1 7.8283 4.0865 -0.4150 42 1 8.8712 7.0292 -1.9737 43 1 9.2822 5.7304 -0.8280 44 1 8.9949 5.3470 -2.5422 45 1 8.2708 8.1643 -3.2586 46 1 6.8114 9.1746 -3.1246 47 1 7.3235 8.1640 -1.7517 48 1 4.7896 6.6628 -4.5408 49 1 5.3894 8.3321 -4.6898 50 1 4.4123 7.4264 -8.1233 51 1 3.2284 3.6640 0.0086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112537316.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:30 Heat of formation + Delta-G solvation = -65.023398 kcal Electronic energy + Delta-G solvation = -29248.193047 eV Core-core repulsion = 25340.178692 eV Total energy + Delta-G solvation = -3908.014355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.25892 -40.78006 -39.12085 -37.27394 -36.47191 -34.86204 -33.75505 -32.89727 -31.15896 -30.16170 -29.71323 -28.67469 -27.46714 -25.66097 -25.28105 -23.83946 -23.59601 -23.12675 -21.30986 -19.87329 -18.87708 -18.66420 -17.91939 -17.24856 -17.07812 -17.04888 -16.84786 -16.40259 -16.15517 -15.89362 -15.57505 -15.08496 -14.61116 -14.49730 -14.36747 -14.32310 -14.08110 -14.01035 -13.82112 -13.47689 -13.40956 -13.35468 -13.14388 -13.09484 -12.95275 -12.79362 -12.61809 -12.57141 -12.50088 -12.33424 -12.18110 -12.13805 -11.98291 -11.69651 -11.61687 -11.57588 -10.64102 -10.50744 -9.76720 -9.34478 -9.26377 -9.09487 -8.21463 -6.36489 0.40117 0.55308 1.34742 1.40176 1.47145 1.96839 2.23777 2.33399 2.45487 2.82187 3.07239 3.25108 3.71052 3.85284 3.89283 4.02166 4.03782 4.09104 4.11876 4.18722 4.22955 4.27600 4.34170 4.44256 4.48531 4.51061 4.63567 4.69710 4.74438 4.79501 4.85440 4.90107 4.90121 4.94963 5.00060 5.04654 5.09125 5.17257 5.21750 5.23042 5.31458 5.37969 5.53438 5.57982 5.62674 5.87909 5.90557 6.02180 6.08158 6.49969 6.57021 6.72183 6.90346 7.30360 7.64580 8.85194 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.003032 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.316007 B = 9233.845074 C =10824.537564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.341 6.341 4 C 0.113 3.887 5 C -0.219 4.219 6 C -0.083 4.083 7 C -0.142 4.142 8 C -0.028 4.028 9 C 0.129 3.871 10 H 0.054 0.946 11 C -0.165 4.165 12 N -0.673 5.673 13 C 0.085 3.915 14 H 0.093 0.907 15 C -0.153 4.153 16 C 0.493 3.507 17 O -0.580 6.580 18 N -0.615 5.615 19 C 0.079 3.921 20 C 0.262 3.738 21 C -0.539 4.539 22 H 0.052 0.948 23 C 0.004 3.996 24 N -0.931 5.931 25 Si 0.968 3.032 26 H -0.280 1.280 27 H -0.278 1.278 28 H -0.257 1.257 29 C -0.177 4.177 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.362 0.638 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.099 0.901 48 H -0.010 1.010 49 H 0.022 0.978 50 H 0.266 0.734 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -9.915 22.734 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.256 6.256 4 C 0.068 3.932 5 C -0.238 4.238 6 C -0.101 4.101 7 C -0.161 4.161 8 C -0.028 4.028 9 C 0.020 3.980 10 H 0.073 0.927 11 C -0.223 4.223 12 N -0.307 5.307 13 C -0.028 4.028 14 H 0.111 0.889 15 C -0.211 4.211 16 C 0.280 3.720 17 O -0.459 6.459 18 N -0.348 5.348 19 C -0.063 4.063 20 C 0.140 3.860 21 C -0.578 4.578 22 H 0.071 0.929 23 C -0.194 4.194 24 N -0.571 5.571 25 Si 0.792 3.208 26 H -0.205 1.205 27 H -0.203 1.203 28 H -0.181 1.181 29 C -0.196 4.196 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.185 0.815 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.117 0.883 48 H 0.008 0.992 49 H 0.040 0.960 50 H 0.075 0.925 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.353 -10.404 21.832 24.415 hybrid contribution -0.003 0.185 -0.752 0.775 sum 3.350 -10.218 21.079 23.664 Atomic orbital electron populations 1.21815 0.91607 1.04267 1.02968 1.23054 0.96856 0.80778 1.02213 1.86046 1.19183 1.31495 1.88876 1.19081 0.82699 0.94374 0.97075 1.21438 0.94698 0.98137 1.09478 1.21285 0.94459 0.97951 0.96435 1.21019 1.00467 0.91651 1.02919 1.19652 0.91740 0.96031 0.95424 1.20366 0.92564 0.92607 0.92495 0.92739 1.22401 1.02703 1.02746 0.94496 1.59750 1.07243 1.22975 1.40750 1.21348 0.97010 0.91584 0.92828 0.88934 1.22151 0.91124 1.04291 1.03519 1.21560 0.82137 0.81455 0.86809 1.90642 1.43883 1.41467 1.69920 1.48166 1.47531 1.13832 1.25245 1.22070 0.95236 0.88979 1.00040 1.18690 0.90636 0.95157 0.81526 1.21669 0.99852 1.44015 0.92225 0.92936 1.25899 0.96387 0.95019 1.02110 1.70056 1.16134 1.47768 1.23115 0.85467 0.78931 0.78676 0.77732 1.20522 1.20297 1.18134 1.20350 0.95390 0.95117 1.08736 0.92631 0.87755 0.91629 0.91772 0.90433 0.83594 0.83022 0.84265 0.91726 0.90321 0.90643 0.81543 0.89049 0.87965 0.93768 0.91861 0.91509 0.88289 0.99237 0.96029 0.92473 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.05 0.87 5.46 71.98 0.39 1.26 16 3 O -0.34 -9.79 10.14 -92.44 -0.94 -10.73 16 4 C 0.11 3.37 6.69 22.51 0.15 3.52 16 5 C -0.22 -5.35 9.04 22.37 0.20 -5.15 16 6 C -0.08 -1.90 10.04 22.26 0.22 -1.68 16 7 C -0.14 -3.57 9.32 22.28 0.21 -3.36 16 8 C -0.03 -0.81 4.95 -19.88 -0.10 -0.91 16 9 C 0.13 3.44 2.53 44.17 0.11 3.56 16 10 H 0.05 1.79 7.60 -2.39 -0.02 1.77 16 11 C -0.16 -2.84 9.12 71.98 0.66 -2.18 16 12 N -0.67 -18.33 5.00 -477.16 -2.38 -20.71 16 13 C 0.09 2.39 2.02 44.17 0.09 2.48 16 14 H 0.09 2.08 6.49 -2.39 -0.02 2.06 16 15 C -0.15 -3.29 8.79 71.98 0.63 -2.66 16 16 C 0.49 21.52 6.97 87.66 0.61 22.13 16 17 O -0.58 -32.61 15.96 -3.02 -0.05 -32.66 16 18 N -0.61 -27.05 2.86 -851.12 -2.43 -29.48 16 19 C 0.08 2.35 8.83 127.77 1.13 3.48 16 20 C 0.26 14.83 5.20 85.63 0.45 15.28 16 21 C -0.54 -32.35 9.39 25.60 0.24 -32.11 16 22 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 23 C 0.00 0.26 5.46 84.66 0.46 0.73 16 24 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 25 Si 0.97 46.45 29.54 68.60 2.03 48.48 16 26 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 28 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 29 C -0.18 -5.74 9.61 22.37 0.21 -5.53 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.16 7.66 -2.39 -0.02 1.15 16 34 H 0.08 1.17 7.66 -2.39 -0.02 1.15 16 35 H 0.15 2.71 6.30 -2.91 -0.02 2.69 16 36 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.14 2.86 7.30 -2.91 -0.02 2.84 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.05 7.59 -2.39 -0.02 1.04 16 41 H 0.36 7.13 7.34 -89.69 -0.66 6.48 16 42 H 0.09 1.75 4.77 -2.39 -0.01 1.73 16 43 H 0.10 1.35 7.96 -2.38 -0.02 1.33 16 44 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 45 H 0.06 1.75 7.12 -2.38 -0.02 1.74 16 46 H 0.07 1.97 7.89 -2.39 -0.02 1.95 16 47 H 0.10 2.05 5.92 -2.39 -0.01 2.04 16 48 H -0.01 -0.70 7.42 -2.39 -0.02 -0.71 16 49 H 0.02 1.24 7.89 -2.39 -0.02 1.22 16 50 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 51 H 0.11 3.72 8.04 -2.91 -0.02 3.70 16 Total: -1.00 -85.97 409.79 3.18 -82.78 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.26 Total: 23.18 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 6.41 Total: -2.67 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -4.53 Total: -108.39 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.99 Total: -43.39 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -85.97 3.18 -82.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112537316.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.761 kcal (2) G-P(sol) polarization free energy of solvation -85.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds