Wall clock time and date at job start Tue Mar 31 2020 19:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47238 * 2 1 4 4 C 1.46896 * 111.00267 * 72.28072 * 3 2 1 5 5 C 1.52997 * 109.46943 * 191.80668 * 4 3 2 6 6 O 1.42896 * 109.47538 * 62.74346 * 5 4 3 7 7 C 1.46905 * 110.99752 * 196.23708 * 3 2 1 8 8 C 1.50699 * 109.47141 * 66.04235 * 7 3 2 9 9 O 1.21281 * 120.00455 * 0.02562 * 8 7 3 10 10 N 1.34780 * 119.99898 * 180.02562 * 8 7 3 11 11 C 1.46508 * 119.99782 * 4.44610 * 10 8 7 12 12 C 1.50704 * 109.46941 * 269.99958 * 11 10 8 13 13 H 1.07999 * 119.99955 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99493 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99509 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47464 * 90.00345 * 16 14 12 18 18 H 1.48507 * 109.46865 * 210.00082 * 16 14 12 19 19 H 1.48497 * 109.47202 * 329.99866 * 16 14 12 20 20 C 1.39915 * 120.00174 * 184.44876 * 10 8 7 21 21 C 1.38895 * 120.06971 * 237.34375 * 20 10 8 22 22 C 1.38096 * 119.92742 * 180.27607 * 21 20 10 23 23 C 1.38302 * 120.07067 * 359.51193 * 22 21 20 24 24 C 1.50699 * 119.92949 * 180.21264 * 23 22 21 25 25 C 1.38264 * 120.14393 * 0.46894 * 23 22 21 26 26 C 1.50690 * 119.96734 * 179.76747 * 25 23 22 27 27 C 1.38135 * 120.06456 * 359.78623 * 25 23 22 28 28 H 1.08991 * 109.47300 * 304.67677 * 1 2 3 29 29 H 1.09005 * 109.47022 * 64.67752 * 1 2 3 30 30 H 1.08995 * 109.47436 * 184.67274 * 1 2 3 31 31 H 1.09000 * 109.47207 * 239.99617 * 2 1 3 32 32 H 1.09000 * 109.47043 * 120.00158 * 2 1 3 33 33 H 1.09001 * 109.46971 * 311.80580 * 4 3 2 34 34 H 1.08999 * 109.46947 * 71.80539 * 4 3 2 35 35 H 1.09004 * 109.46781 * 182.73840 * 5 4 3 36 36 H 1.08997 * 109.47171 * 302.73326 * 5 4 3 37 37 H 0.96695 * 114.00535 * 184.99886 * 6 5 4 38 38 H 1.08996 * 109.46616 * 306.04268 * 7 3 2 39 39 H 1.08998 * 109.46729 * 186.04264 * 7 3 2 40 40 H 1.08994 * 109.47043 * 29.99996 * 11 10 8 41 41 H 1.08998 * 109.46922 * 150.00199 * 11 10 8 42 42 H 0.97002 * 120.00041 * 179.97438 * 15 14 12 43 43 H 1.07994 * 120.03844 * 359.97438 * 21 20 10 44 44 H 1.07999 * 119.95976 * 179.72884 * 22 21 20 45 45 H 1.09008 * 109.47043 * 270.25726 * 24 23 22 46 46 H 1.09000 * 109.47270 * 30.25103 * 24 23 22 47 47 H 1.08999 * 109.46918 * 150.25838 * 24 23 22 48 48 H 1.09004 * 109.46963 * 270.02240 * 26 25 23 49 49 H 1.08999 * 109.47253 * 30.01985 * 26 25 23 50 50 H 1.09001 * 109.47350 * 150.02335 * 26 25 23 51 51 H 1.08000 * 120.03170 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8017 2.0205 1.3063 5 6 2.0456 3.5262 1.1879 6 8 1.0992 4.0921 0.2791 7 6 3.4367 1.4423 -0.3835 8 6 3.5865 1.0090 -1.8190 9 8 2.6092 0.6847 -2.4598 10 7 4.8067 0.9817 -2.3909 11 6 5.9974 1.2789 -1.5907 12 6 6.2826 2.7578 -1.6448 13 1 5.6408 3.4109 -2.2174 14 6 7.3622 3.2770 -0.9622 15 7 8.1433 2.4817 -0.2645 16 14 7.7152 5.1101 -1.0286 17 1 7.0019 5.7922 0.0810 18 1 9.1763 5.3381 -0.8918 19 1 7.2484 5.6574 -2.3277 20 6 4.9362 0.6695 -3.7486 21 6 5.7316 -0.3981 -4.1444 22 6 5.8619 -0.7000 -5.4857 23 6 5.1934 0.0530 -6.4337 24 6 5.3340 -0.2823 -7.8961 25 6 4.4004 1.1162 -6.0429 26 6 3.6779 1.9372 -7.0795 27 6 4.2702 1.4266 -4.7032 28 1 -0.3633 0.5846 0.8450 29 1 -0.3633 0.4396 -0.9290 30 1 -0.3634 -1.0242 0.0837 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.7762 1.8429 1.6301 34 1 2.4917 1.5969 2.0361 35 1 1.9314 3.9909 2.1673 36 1 3.0554 3.7027 0.8176 37 1 1.2421 5.0308 0.0962 38 1 4.0140 0.7775 0.2589 39 1 3.8021 2.4631 -0.2721 40 1 5.8245 0.9798 -0.5570 41 1 6.8499 0.7297 -1.9902 42 1 8.9031 2.8470 0.2154 43 1 6.2515 -0.9884 -3.4045 44 1 6.4838 -1.5273 -5.7943 45 1 6.1782 0.2656 -8.3150 46 1 5.5040 -1.3531 -8.0087 47 1 4.4217 -0.0018 -8.4225 48 1 4.3141 2.7637 -7.3964 49 1 3.4415 1.3105 -7.9394 50 1 2.7557 2.3315 -6.6527 51 1 3.6510 2.2574 -4.3986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118835293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:04 Heat of formation + Delta-G solvation = -53.224594 kcal Electronic energy + Delta-G solvation = -30250.858903 eV Core-core repulsion = 26343.356183 eV Total energy + Delta-G solvation = -3907.502720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.04821 -38.73090 -37.42750 -35.82901 -35.11156 -33.01278 -32.10491 -31.51188 -30.89514 -29.22586 -27.71340 -26.78425 -26.34090 -24.94834 -23.09234 -22.49421 -21.78788 -21.10863 -19.98953 -18.44754 -17.20991 -16.79908 -16.69549 -16.08988 -15.44903 -15.36603 -15.16368 -14.79017 -14.61373 -14.23417 -13.97529 -13.93759 -13.51114 -13.32295 -13.03110 -12.75769 -12.72751 -12.58894 -12.51343 -12.31994 -12.25832 -11.88019 -11.71592 -11.64905 -11.48599 -11.34383 -11.30342 -11.15540 -10.91022 -10.86030 -10.63580 -10.53992 -10.47325 -10.22501 -9.87679 -9.68964 -9.06466 -8.64832 -8.56355 -8.22991 -7.91433 -7.38658 -6.25260 -4.32923 1.77602 1.88882 3.16282 3.24708 3.27362 3.35077 3.63798 4.17789 4.26708 4.31946 4.49328 5.07457 5.13547 5.18673 5.20921 5.23311 5.35999 5.38514 5.44330 5.48235 5.52807 5.62871 5.66788 5.70425 5.76321 5.80305 5.84252 5.88618 5.88958 5.94053 6.02453 6.08230 6.09000 6.13559 6.18242 6.29289 6.37495 6.52671 6.53932 6.69308 6.85844 6.96399 7.04364 7.11882 7.27449 7.31827 7.40216 7.66626 7.76471 7.89406 7.96123 8.20430 8.72131 8.98708 9.34787 10.81199 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007426 B = 0.005118 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3769.749927 B = 5469.241379 C = 7787.824664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 N -0.512 5.512 4 C 0.055 3.945 5 C 0.076 3.924 6 O -0.557 6.557 7 C 0.042 3.958 8 C 0.523 3.477 9 O -0.536 6.536 10 N -0.561 5.561 11 C 0.238 3.762 12 C -0.537 4.537 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.891 5.891 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.180 3.820 21 C -0.132 4.132 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.109 4.109 25 C -0.079 4.079 26 C -0.112 4.112 27 C -0.105 4.105 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.371 0.629 38 H 0.060 0.940 39 H 0.117 0.883 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.266 0.734 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 -2.786 -3.018 8.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 N -0.237 5.237 4 C -0.073 4.073 5 C -0.002 4.002 6 O -0.361 6.361 7 C -0.088 4.088 8 C 0.312 3.688 9 O -0.413 6.413 10 N -0.288 5.288 11 C 0.119 3.881 12 C -0.575 4.575 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.529 5.529 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.088 3.912 21 C -0.152 4.152 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.166 4.166 25 C -0.080 4.080 26 C -0.169 4.169 27 C -0.125 4.125 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.217 0.783 38 H 0.078 0.922 39 H 0.134 0.866 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.631 -3.313 -3.505 9.887 hybrid contribution 1.400 1.258 0.939 2.103 sum -7.231 -2.055 -2.566 7.943 Atomic orbital electron populations 1.21678 0.95130 1.00340 1.02391 1.22179 0.96226 0.88661 1.00868 1.61612 1.16540 1.17653 1.27848 1.22178 1.01882 0.93204 0.90060 1.22240 0.92684 0.93366 0.91912 1.86585 1.54437 1.28300 1.66751 1.22010 0.89037 1.04294 0.93507 1.20388 0.82157 0.76987 0.89254 1.90621 1.37778 1.47963 1.64935 1.45998 1.08852 1.66534 1.07452 1.19566 0.81269 0.96856 0.90379 1.21443 1.12305 0.92521 1.31245 0.91959 1.24916 0.95522 0.98345 0.94859 1.69913 1.16523 1.35167 1.31278 0.86520 0.77635 0.84856 0.78679 1.20469 1.20982 1.19677 1.17555 0.96577 0.93075 0.84037 1.21064 1.01159 0.96808 0.96170 1.20708 0.99813 0.99855 0.92173 1.19580 0.99200 0.96819 0.95505 1.20763 1.01948 1.01284 0.92568 1.19500 0.98227 0.96376 0.93867 1.20804 0.99712 0.99028 0.97333 1.20965 1.00771 0.99109 0.91628 0.93256 0.91740 0.93117 0.89381 0.95952 0.89899 0.93558 0.93783 0.92897 0.78313 0.92245 0.86553 0.94245 0.94187 0.92443 0.86130 0.86376 0.91704 0.92148 0.91614 0.91466 0.91510 0.91794 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.05 37.16 0.37 -1.56 16 2 C 0.05 0.77 5.25 -3.82 -0.02 0.75 16 3 N -0.51 -8.78 4.10 -236.08 -0.97 -9.75 16 4 C 0.05 0.78 5.20 -3.83 -0.02 0.76 16 5 C 0.08 1.05 7.12 37.16 0.26 1.32 16 6 O -0.56 -8.25 13.57 -35.23 -0.48 -8.73 16 7 C 0.04 0.78 3.97 -4.97 -0.02 0.76 16 8 C 0.52 11.14 7.03 -10.98 -0.08 11.06 16 9 O -0.54 -12.27 13.86 5.56 0.08 -12.19 16 10 N -0.56 -12.21 2.56 -114.73 -0.29 -12.51 16 11 C 0.24 5.61 4.86 -5.19 -0.03 5.58 16 12 C -0.54 -13.72 9.17 -34.44 -0.32 -14.04 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -23.94 13.29 55.43 0.74 -23.20 16 16 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.18 3.76 5.15 -83.70 -0.43 3.33 16 21 C -0.13 -2.48 9.33 -39.39 -0.37 -2.85 16 22 C -0.11 -1.73 9.69 -39.61 -0.38 -2.11 16 23 C -0.11 -1.72 5.88 -104.59 -0.62 -2.33 16 24 C -0.11 -1.26 9.60 36.01 0.35 -0.92 16 25 C -0.08 -1.33 5.88 -104.65 -0.62 -1.95 16 26 C -0.11 -1.49 9.60 36.00 0.35 -1.15 16 27 C -0.10 -2.09 8.61 -39.39 -0.34 -2.43 16 28 H 0.05 0.64 6.46 -51.93 -0.34 0.30 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.61 5.81 -51.93 -0.30 1.31 16 32 H 0.02 0.32 8.05 -51.93 -0.42 -0.09 16 33 H 0.08 1.11 6.32 -51.93 -0.33 0.78 16 34 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.79 6.32 -51.93 -0.33 0.46 16 37 H 0.37 3.92 9.12 45.56 0.42 4.34 16 38 H 0.06 1.08 7.24 -51.93 -0.38 0.71 16 39 H 0.12 2.29 5.91 -51.93 -0.31 1.99 16 40 H 0.04 0.94 6.47 -51.93 -0.34 0.60 16 41 H 0.04 1.00 7.39 -51.93 -0.38 0.62 16 42 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.12 2.16 7.86 -52.49 -0.41 1.75 16 44 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 46 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 47 H 0.07 0.68 5.94 -51.93 -0.31 0.37 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.75 5.94 -51.93 -0.31 0.44 16 50 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 51 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -30.59 406.09 -9.32 -39.91 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.49 Total: 9.34 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.00 Total: -4.13 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.52 Total: -45.46 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.40 Total: -20.92 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.59 -9.32 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118835293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.314 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds