Wall clock time and date at job start Tue Mar 31 2020 19:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47238 * 2 1 4 4 C 1.46896 * 111.00267 * 72.28072 * 3 2 1 5 5 C 1.52997 * 109.46943 * 191.80668 * 4 3 2 6 6 O 1.42896 * 109.47538 * 62.74346 * 5 4 3 7 7 C 1.46905 * 110.99752 * 196.23708 * 3 2 1 8 8 C 1.50699 * 109.47141 * 66.04235 * 7 3 2 9 9 O 1.21281 * 120.00455 * 0.02562 * 8 7 3 10 10 N 1.34780 * 119.99898 * 180.02562 * 8 7 3 11 11 C 1.46508 * 119.99782 * 4.44610 * 10 8 7 12 12 C 1.50704 * 109.46941 * 269.99958 * 11 10 8 13 13 H 1.07999 * 119.99955 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99493 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99509 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47464 * 90.00345 * 16 14 12 18 18 H 1.48507 * 109.46865 * 210.00082 * 16 14 12 19 19 H 1.48497 * 109.47202 * 329.99866 * 16 14 12 20 20 C 1.39915 * 120.00174 * 184.44876 * 10 8 7 21 21 C 1.38895 * 120.06971 * 237.34375 * 20 10 8 22 22 C 1.38096 * 119.92742 * 180.27607 * 21 20 10 23 23 C 1.38302 * 120.07067 * 359.51193 * 22 21 20 24 24 C 1.50699 * 119.92949 * 180.21264 * 23 22 21 25 25 C 1.38264 * 120.14393 * 0.46894 * 23 22 21 26 26 C 1.50690 * 119.96734 * 179.76747 * 25 23 22 27 27 C 1.38135 * 120.06456 * 359.78623 * 25 23 22 28 28 H 1.08991 * 109.47300 * 304.67677 * 1 2 3 29 29 H 1.09005 * 109.47022 * 64.67752 * 1 2 3 30 30 H 1.08995 * 109.47436 * 184.67274 * 1 2 3 31 31 H 1.09000 * 109.47207 * 239.99617 * 2 1 3 32 32 H 1.09000 * 109.47043 * 120.00158 * 2 1 3 33 33 H 1.09001 * 109.46971 * 311.80580 * 4 3 2 34 34 H 1.08999 * 109.46947 * 71.80539 * 4 3 2 35 35 H 1.09004 * 109.46781 * 182.73840 * 5 4 3 36 36 H 1.08997 * 109.47171 * 302.73326 * 5 4 3 37 37 H 0.96695 * 114.00535 * 184.99886 * 6 5 4 38 38 H 1.08996 * 109.46616 * 306.04268 * 7 3 2 39 39 H 1.08998 * 109.46729 * 186.04264 * 7 3 2 40 40 H 1.08994 * 109.47043 * 29.99996 * 11 10 8 41 41 H 1.08998 * 109.46922 * 150.00199 * 11 10 8 42 42 H 0.97002 * 120.00041 * 179.97438 * 15 14 12 43 43 H 1.07994 * 120.03844 * 359.97438 * 21 20 10 44 44 H 1.07999 * 119.95976 * 179.72884 * 22 21 20 45 45 H 1.09008 * 109.47043 * 270.25726 * 24 23 22 46 46 H 1.09000 * 109.47270 * 30.25103 * 24 23 22 47 47 H 1.08999 * 109.46918 * 150.25838 * 24 23 22 48 48 H 1.09004 * 109.46963 * 270.02240 * 26 25 23 49 49 H 1.08999 * 109.47253 * 30.01985 * 26 25 23 50 50 H 1.09001 * 109.47350 * 150.02335 * 26 25 23 51 51 H 1.08000 * 120.03170 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8017 2.0205 1.3063 5 6 2.0456 3.5262 1.1879 6 8 1.0992 4.0921 0.2791 7 6 3.4367 1.4423 -0.3835 8 6 3.5865 1.0090 -1.8190 9 8 2.6092 0.6847 -2.4598 10 7 4.8067 0.9817 -2.3909 11 6 5.9974 1.2789 -1.5907 12 6 6.2826 2.7578 -1.6448 13 1 5.6408 3.4109 -2.2174 14 6 7.3622 3.2770 -0.9622 15 7 8.1433 2.4817 -0.2645 16 14 7.7152 5.1101 -1.0286 17 1 7.0019 5.7922 0.0810 18 1 9.1763 5.3381 -0.8918 19 1 7.2484 5.6574 -2.3277 20 6 4.9362 0.6695 -3.7486 21 6 5.7316 -0.3981 -4.1444 22 6 5.8619 -0.7000 -5.4857 23 6 5.1934 0.0530 -6.4337 24 6 5.3340 -0.2823 -7.8961 25 6 4.4004 1.1162 -6.0429 26 6 3.6779 1.9372 -7.0795 27 6 4.2702 1.4266 -4.7032 28 1 -0.3633 0.5846 0.8450 29 1 -0.3633 0.4396 -0.9290 30 1 -0.3634 -1.0242 0.0837 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.7762 1.8429 1.6301 34 1 2.4917 1.5969 2.0361 35 1 1.9314 3.9909 2.1673 36 1 3.0554 3.7027 0.8176 37 1 1.2421 5.0308 0.0962 38 1 4.0140 0.7775 0.2589 39 1 3.8021 2.4631 -0.2721 40 1 5.8245 0.9798 -0.5570 41 1 6.8499 0.7297 -1.9902 42 1 8.9031 2.8470 0.2154 43 1 6.2515 -0.9884 -3.4045 44 1 6.4838 -1.5273 -5.7943 45 1 6.1782 0.2656 -8.3150 46 1 5.5040 -1.3531 -8.0087 47 1 4.4217 -0.0018 -8.4225 48 1 4.3141 2.7637 -7.3964 49 1 3.4415 1.3105 -7.9394 50 1 2.7557 2.3315 -6.6527 51 1 3.6510 2.2574 -4.3986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118835293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:03 Heat of formation + Delta-G solvation = -72.696995 kcal Electronic energy + Delta-G solvation = -30251.703289 eV Core-core repulsion = 26343.356183 eV Total energy + Delta-G solvation = -3908.347107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61348 -40.10457 -38.74254 -37.15421 -36.69026 -34.83777 -33.54061 -32.86355 -32.12403 -30.50306 -29.42797 -28.19962 -27.63637 -26.25018 -24.97834 -23.68311 -23.16713 -22.45603 -21.29706 -20.00348 -18.71513 -18.38374 -18.26873 -17.72368 -16.89370 -16.74987 -16.52763 -16.36516 -16.11965 -15.58655 -15.42899 -15.06451 -14.80184 -14.63306 -14.39754 -14.21427 -14.13772 -14.06350 -13.64419 -13.55767 -13.53897 -13.48984 -13.18375 -12.98854 -12.76381 -12.71577 -12.67801 -12.61232 -12.58428 -12.28291 -12.10234 -11.89800 -11.78666 -11.73079 -11.70033 -10.80273 -10.76247 -10.60933 -10.14190 -9.62703 -9.23757 -8.94405 -8.24324 -6.40244 0.36986 0.48120 1.36861 1.39877 1.49220 1.67506 2.07833 2.37241 2.80130 2.93336 3.04876 3.46593 3.71725 3.92828 3.99195 4.02547 4.10845 4.13380 4.19557 4.28011 4.31636 4.41740 4.42434 4.51185 4.57138 4.64241 4.68076 4.71318 4.73722 4.78131 4.79030 4.84588 4.89476 4.98907 5.00525 5.02494 5.07538 5.13444 5.22130 5.27861 5.34983 5.47187 5.52893 5.65493 5.73404 5.82951 5.97078 5.98257 6.16105 6.22755 6.46255 6.71932 6.96557 7.25113 7.35401 8.80388 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007426 B = 0.005118 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3769.749927 B = 5469.241379 C = 7787.824664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.048 3.952 3 N -0.527 5.527 4 C 0.051 3.949 5 C 0.076 3.924 6 O -0.579 6.579 7 C 0.054 3.946 8 C 0.517 3.483 9 O -0.557 6.557 10 N -0.562 5.562 11 C 0.256 3.744 12 C -0.545 4.545 13 H 0.047 0.953 14 C 0.028 3.972 15 N -0.917 5.917 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.276 1.276 20 C 0.139 3.861 21 C -0.150 4.150 22 C -0.104 4.104 23 C -0.106 4.106 24 C -0.107 4.107 25 C -0.084 4.084 26 C -0.110 4.110 27 C -0.129 4.129 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.387 0.613 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.034 0.966 41 H 0.021 0.979 42 H 0.270 0.730 43 H 0.118 0.882 44 H 0.152 0.848 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.057 0.943 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 -2.729 -4.015 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.080 4.080 3 N -0.252 5.252 4 C -0.076 4.076 5 C -0.002 4.002 6 O -0.385 6.385 7 C -0.077 4.077 8 C 0.307 3.693 9 O -0.436 6.436 10 N -0.289 5.289 11 C 0.136 3.864 12 C -0.583 4.583 13 H 0.065 0.935 14 C -0.173 4.173 15 N -0.555 5.555 16 Si 0.779 3.221 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.201 1.201 20 C 0.048 3.952 21 C -0.170 4.170 22 C -0.122 4.122 23 C -0.106 4.106 24 C -0.163 4.163 25 C -0.085 4.085 26 C -0.166 4.166 27 C -0.149 4.149 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.235 0.765 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.052 0.948 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.136 0.864 44 H 0.170 0.830 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.114 0.886 50 H 0.076 0.924 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.795 -3.248 -4.506 10.402 hybrid contribution 1.439 1.196 1.160 2.201 sum -7.356 -2.052 -3.346 8.338 Atomic orbital electron populations 1.21610 0.93464 1.01812 1.01728 1.22169 0.97523 0.88056 1.00225 1.61640 1.15036 1.18593 1.29942 1.22335 1.03001 0.93408 0.88877 1.22294 0.91480 0.93336 0.93091 1.86532 1.54791 1.29930 1.67280 1.21824 0.90574 1.03305 0.91949 1.20846 0.81738 0.76531 0.90159 1.90586 1.38205 1.49040 1.65722 1.45941 1.08370 1.66568 1.08052 1.19197 0.81397 0.95661 0.90138 1.21520 1.12372 0.93248 1.31186 0.93466 1.25585 0.95167 1.02219 0.94358 1.69994 1.16922 1.36818 1.31796 0.85611 0.77632 0.80170 0.78671 1.19096 1.20424 1.20145 1.17933 0.98720 0.94862 0.83698 1.21220 1.01320 0.96658 0.97755 1.21140 0.99548 1.00481 0.91013 1.20119 0.97266 0.95299 0.97908 1.20855 1.03366 1.02818 0.89229 1.19947 0.98267 0.97076 0.93221 1.20870 0.99217 0.99387 0.97106 1.20969 1.01539 0.99131 0.93308 0.91838 0.94000 0.90934 0.92329 0.94175 0.88560 0.92106 0.90675 0.94752 0.76460 0.92035 0.87737 0.94776 0.96080 0.92116 0.86354 0.82998 0.90221 0.90241 0.90022 0.90247 0.88638 0.92392 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 10.05 71.98 0.72 -2.81 16 2 C 0.05 1.54 5.25 86.30 0.45 1.99 16 3 N -0.53 -18.39 4.10 -900.81 -3.69 -22.09 16 4 C 0.05 1.41 5.20 86.30 0.45 1.86 16 5 C 0.08 2.04 7.12 71.98 0.51 2.56 16 6 O -0.58 -16.94 13.57 -148.98 -2.02 -18.96 16 7 C 0.05 2.13 3.97 85.56 0.34 2.47 16 8 C 0.52 23.41 7.03 87.66 0.62 24.03 16 9 O -0.56 -27.06 13.86 -3.03 -0.04 -27.10 16 10 N -0.56 -26.08 2.56 -635.30 -1.63 -27.70 16 11 C 0.26 12.72 4.86 85.63 0.42 13.13 16 12 C -0.54 -28.94 9.17 25.60 0.23 -28.71 16 13 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 14 C 0.03 1.45 5.46 84.66 0.46 1.91 16 15 N -0.92 -49.93 13.29 21.45 0.28 -49.65 16 16 Si 0.95 41.58 29.54 68.60 2.03 43.61 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 C 0.14 6.15 5.15 38.16 0.20 6.35 16 21 C -0.15 -5.79 9.33 22.39 0.21 -5.59 16 22 C -0.10 -3.22 9.69 22.25 0.22 -3.00 16 23 C -0.11 -3.07 5.88 -19.84 -0.12 -3.19 16 24 C -0.11 -2.03 9.60 71.24 0.68 -1.35 16 25 C -0.08 -2.81 5.88 -19.89 -0.12 -2.93 16 26 C -0.11 -2.74 9.60 71.23 0.68 -2.06 16 27 C -0.13 -5.42 8.61 22.39 0.19 -5.23 16 28 H 0.06 1.55 6.46 -2.39 -0.02 1.53 16 29 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 2.24 5.81 -2.39 -0.01 2.22 16 32 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 33 H 0.10 2.41 6.32 -2.39 -0.02 2.39 16 34 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.03 1.04 6.32 -2.39 -0.02 1.03 16 37 H 0.39 8.07 9.12 -74.06 -0.68 7.39 16 38 H 0.06 2.35 7.24 -2.39 -0.02 2.33 16 39 H 0.10 4.35 5.91 -2.39 -0.01 4.34 16 40 H 0.03 1.71 6.47 -2.39 -0.02 1.70 16 41 H 0.02 1.12 7.39 -2.39 -0.02 1.10 16 42 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.12 4.47 7.86 -2.91 -0.02 4.44 16 44 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 45 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 47 H 0.08 1.33 5.94 -2.39 -0.01 1.31 16 48 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 49 H 0.10 1.82 5.94 -2.39 -0.01 1.81 16 50 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 51 H 0.09 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -68.65 406.09 1.34 -67.31 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.26 Total: 35.15 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.15 Total: -0.57 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -5.03 Total: -99.44 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -2.06 Total: -46.06 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -68.65 1.34 -67.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118835293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.389 kcal (2) G-P(sol) polarization free energy of solvation -68.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds