Wall clock time and date at job start Tue Mar 31 2020 19:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47313 * 2 1 4 4 C 1.36936 * 119.99987 * 274.33221 * 3 2 1 5 5 H 1.08003 * 119.99818 * 337.80715 * 4 3 2 6 6 C 1.38814 * 120.00130 * 157.80363 * 4 3 2 7 7 N 1.31617 * 120.00172 * 7.73143 * 6 4 3 8 8 Si 1.86801 * 119.99846 * 187.73137 * 6 4 3 9 9 H 1.48504 * 109.47150 * 89.99940 * 8 6 4 10 10 H 1.48501 * 109.47230 * 209.99677 * 8 6 4 11 11 H 1.48495 * 109.47162 * 330.00083 * 8 6 4 12 12 C 1.46497 * 120.00200 * 94.33097 * 3 2 1 13 13 C 1.50701 * 109.47430 * 270.00052 * 12 3 2 14 14 O 1.21288 * 119.99499 * 359.97438 * 13 12 3 15 15 N 1.34773 * 120.00062 * 180.02562 * 13 12 3 16 16 C 1.46507 * 119.99867 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47185 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47178 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47233 * 179.97438 * 18 17 16 20 20 C 1.42894 * 114.00163 * 180.02562 * 19 18 17 21 21 H 1.09005 * 109.46813 * 30.00117 * 20 19 18 22 22 C 1.52996 * 109.47329 * 270.00648 * 20 19 18 23 23 C 1.50692 * 109.47143 * 150.00316 * 20 19 18 24 24 C 1.38239 * 120.00191 * 39.72774 * 23 20 19 25 25 C 1.38240 * 120.00086 * 179.78702 * 24 23 20 26 26 C 1.38236 * 119.99803 * 0.44539 * 25 24 23 27 27 C 1.38229 * 120.00104 * 359.80975 * 26 25 24 28 28 C 1.38236 * 120.00306 * 359.97438 * 27 26 25 29 29 H 1.08991 * 109.47436 * 300.00574 * 1 2 3 30 30 H 1.09006 * 109.46693 * 60.00596 * 1 2 3 31 31 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47335 * 239.99330 * 2 1 3 33 33 H 1.09003 * 109.46822 * 119.99922 * 2 1 3 34 34 H 0.96996 * 120.00273 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47246 * 149.99947 * 12 3 2 36 36 H 1.09004 * 109.47330 * 30.00097 * 12 3 2 37 37 H 0.96996 * 120.00410 * 0.02562 * 15 13 12 38 38 H 1.08999 * 109.47122 * 59.99769 * 16 15 13 39 39 H 1.08995 * 109.46824 * 300.00074 * 16 15 13 40 40 H 1.08997 * 109.46727 * 59.99691 * 17 16 15 41 41 H 1.09004 * 109.46928 * 300.00198 * 17 16 15 42 42 H 1.09009 * 109.46644 * 60.00560 * 18 17 16 43 43 H 1.08991 * 109.47410 * 300.00710 * 18 17 16 44 44 H 1.09010 * 109.47198 * 179.97438 * 22 20 19 45 45 H 1.09001 * 109.47207 * 299.99553 * 22 20 19 46 46 H 1.08999 * 109.47060 * 59.99808 * 22 20 19 47 47 H 1.08000 * 119.99636 * 0.02562 * 24 23 20 48 48 H 1.07994 * 119.99776 * 180.27759 * 25 24 23 49 49 H 1.07997 * 119.99516 * 179.83428 * 26 25 24 50 50 H 1.08004 * 120.00073 * 180.02562 * 27 26 25 51 51 H 1.08005 * 120.00086 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1622 2.0565 -1.1825 5 1 2.2701 1.5092 -2.1073 6 6 2.1691 3.4446 -1.1927 7 7 2.1909 4.1109 -0.0578 8 14 2.1474 4.3668 -2.8170 9 1 0.7417 4.6184 -3.2247 10 1 2.8566 5.6621 -2.6604 11 1 2.8264 3.5533 -3.8572 12 6 2.3529 2.0398 1.2651 13 6 1.1319 2.7380 1.8062 14 8 0.0854 2.6904 1.1950 15 7 1.2032 3.4161 2.9688 16 6 0.0160 4.0943 3.4951 17 6 0.3654 4.7823 4.8162 18 6 -0.8742 5.4912 5.3656 19 8 -0.5480 6.1333 6.5998 20 6 -1.6426 6.8281 7.2006 21 1 -2.5768 6.3335 6.9345 22 6 -1.6686 8.2723 6.6962 23 6 -1.4799 6.8221 8.6987 24 6 -0.2284 6.9981 9.2588 25 6 -0.0798 6.9970 10.6332 26 6 -1.1813 6.8107 11.4473 27 6 -2.4320 6.6294 10.8872 28 6 -2.5813 6.6350 9.5129 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.1954 5.0809 -0.0649 35 1 3.1442 2.7702 1.0963 36 1 2.6937 1.2945 1.9838 37 1 2.0404 3.4550 3.4570 38 1 -0.7748 3.3636 3.6645 39 1 -0.3254 4.8391 2.7763 40 1 1.1564 5.5130 4.6472 41 1 0.7067 4.0371 5.5348 42 1 -1.6654 4.7607 5.5345 43 1 -1.2151 6.2363 4.6469 44 1 -2.5040 8.8021 7.1542 45 1 -0.7345 8.7669 6.9622 46 1 -1.7863 8.2766 5.6126 47 1 0.6327 7.1403 8.6226 48 1 0.8973 7.1390 11.0707 49 1 -1.0648 6.8072 12.5209 50 1 -3.2927 6.4842 11.5232 51 1 -3.5584 6.4929 9.0753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121038603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:25 Heat of formation + Delta-G solvation = -38.419458 kcal Electronic energy + Delta-G solvation = -28289.754417 eV Core-core repulsion = 24382.893695 eV Total energy + Delta-G solvation = -3906.860721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.84685 -38.38931 -37.94071 -35.62602 -34.39993 -32.96161 -31.74678 -31.18856 -30.87249 -29.40061 -28.99935 -26.86083 -24.95628 -23.86353 -23.32131 -22.74591 -21.49793 -20.96079 -20.41683 -19.17548 -17.33321 -16.91175 -16.72462 -16.02693 -15.82513 -15.50492 -15.14155 -14.92751 -14.66073 -14.41144 -14.25925 -13.74172 -13.62593 -13.45922 -13.30944 -13.03802 -12.88079 -12.58515 -12.45733 -12.28786 -12.04140 -11.83512 -11.54650 -11.51483 -11.28550 -11.21592 -11.13665 -10.87497 -10.86413 -10.83817 -10.69886 -10.33254 -9.97373 -9.81785 -9.74662 -9.63169 -9.17423 -9.01387 -8.71195 -8.15984 -7.90996 -6.72975 -5.74437 -3.13096 1.04659 1.15339 3.31508 3.42916 3.49127 3.50585 3.57950 4.28815 4.39312 4.47970 4.60783 4.65971 4.73433 4.85191 4.87967 4.92821 5.05246 5.19551 5.22081 5.28423 5.31136 5.39029 5.48221 5.53990 5.61154 5.62550 5.69660 5.72041 5.79447 5.91522 5.93155 6.18940 6.19538 6.25685 6.26238 6.33275 6.37957 6.49755 6.53394 6.59760 6.72459 6.72662 6.94120 7.08730 7.10128 7.39103 7.49316 7.61387 7.80104 8.41684 8.78293 9.26498 9.82237 9.97107 10.35710 11.32575 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.001939 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.677139 B =14436.974392 C =15124.589670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 N -0.579 5.579 4 C -0.238 4.238 5 H 0.073 0.927 6 C 0.005 3.995 7 N -0.909 5.909 8 Si 0.909 3.091 9 H -0.290 1.290 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.165 3.835 13 C 0.530 3.470 14 O -0.540 6.540 15 N -0.750 5.750 16 C 0.133 3.867 17 C -0.126 4.126 18 C 0.067 3.933 19 O -0.378 6.378 20 C 0.126 3.874 21 H 0.068 0.932 22 C -0.170 4.170 23 C -0.084 4.084 24 C -0.091 4.091 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.252 0.748 35 H 0.118 0.882 36 H 0.025 0.975 37 H 0.387 0.613 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.128 0.872 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 5.827 22.002 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 N -0.300 5.300 4 C -0.367 4.367 5 H 0.091 0.909 6 C -0.191 4.191 7 N -0.556 5.556 8 Si 0.740 3.260 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.207 1.207 12 C 0.035 3.965 13 C 0.318 3.682 14 O -0.415 6.415 15 N -0.405 5.405 16 C 0.008 3.992 17 C -0.164 4.164 18 C -0.010 4.010 19 O -0.297 6.297 20 C 0.069 3.931 21 H 0.086 0.914 22 C -0.227 4.227 23 C -0.084 4.084 24 C -0.109 4.109 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.042 0.958 37 H 0.219 0.781 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.146 0.854 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.362 5.909 21.552 23.235 hybrid contribution -0.236 0.932 -0.682 1.179 sum -6.598 6.841 20.870 22.932 Atomic orbital electron populations 1.22333 0.99187 0.97720 1.02938 1.20847 0.92508 0.86588 0.98174 1.43780 1.73993 1.09833 1.02346 1.19235 1.42391 0.88888 0.86212 0.90915 1.24923 1.00691 0.96571 0.96942 1.69657 1.55796 1.06444 1.23745 0.86177 0.77535 0.79038 0.83258 1.21676 1.21958 1.20736 1.20726 0.94881 0.94957 0.85911 1.22073 0.91586 0.77453 0.77119 1.90481 1.32215 1.62046 1.56754 1.46146 1.11795 1.56813 1.25784 1.20820 0.89775 0.95852 0.92772 1.21675 0.97663 1.00075 0.96966 1.22460 0.97744 0.95527 0.85292 1.87910 1.35018 1.69440 1.37330 1.20826 0.90318 0.92964 0.89024 0.91372 1.22270 1.02891 0.95861 1.01694 1.19783 0.94010 1.00442 0.94183 1.21046 0.97210 0.97870 0.94769 1.21206 0.98837 1.00373 0.93733 1.21176 0.92937 1.00033 0.99792 1.21087 0.97516 1.00727 0.94780 1.20987 0.98173 1.00279 0.93665 0.92437 0.93111 0.95750 0.94086 0.94655 0.93681 0.86474 0.95755 0.78115 0.93099 0.92593 0.90620 0.90894 0.93127 0.92962 0.91602 0.91547 0.91804 0.85427 0.86002 0.86190 0.86045 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.65 37.16 0.36 -3.16 16 2 C 0.15 3.16 6.44 -4.04 -0.03 3.14 16 3 N -0.58 -14.68 2.07 -174.61 -0.36 -15.04 16 4 C -0.24 -6.59 9.70 -15.06 -0.15 -6.73 16 5 H 0.07 1.98 7.84 -52.48 -0.41 1.57 16 6 C 0.01 0.14 5.41 -17.43 -0.09 0.05 16 7 N -0.91 -25.37 8.21 55.49 0.46 -24.91 16 8 Si 0.91 22.47 29.56 -169.99 -5.02 17.45 16 9 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.17 3.88 5.47 -5.19 -0.03 3.85 16 13 C 0.53 12.52 5.79 -10.99 -0.06 12.46 16 14 O -0.54 -14.93 13.89 5.55 0.08 -14.85 16 15 N -0.75 -14.10 5.56 -60.29 -0.33 -14.44 16 16 C 0.13 2.21 5.67 -4.04 -0.02 2.19 16 17 C -0.13 -1.61 5.70 -26.73 -0.15 -1.76 16 18 C 0.07 0.77 5.75 37.16 0.21 0.99 16 19 O -0.38 -4.47 9.30 -35.23 -0.33 -4.79 16 20 C 0.13 1.24 2.93 -27.89 -0.08 1.16 16 21 H 0.07 0.60 7.65 -51.93 -0.40 0.21 16 22 C -0.17 -1.49 9.51 37.16 0.35 -1.13 16 23 C -0.08 -0.83 4.97 -104.62 -0.52 -1.35 16 24 C -0.09 -0.90 9.36 -39.58 -0.37 -1.27 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 26 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 27 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 28 C -0.11 -0.97 9.67 -39.58 -0.38 -1.36 16 29 H 0.06 1.35 6.39 -51.93 -0.33 1.02 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 0.69 7.84 -51.93 -0.41 0.28 16 34 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.12 2.95 6.24 -51.93 -0.32 2.62 16 36 H 0.02 0.50 7.86 -51.93 -0.41 0.09 16 37 H 0.39 6.21 8.47 -40.82 -0.35 5.87 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.55 8.08 -51.92 -0.42 0.13 16 43 H 0.05 0.59 7.87 -51.93 -0.41 0.18 16 44 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 47 H 0.13 1.27 7.77 -52.49 -0.41 0.86 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 50 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 51 H 0.12 0.83 8.04 -52.48 -0.42 0.40 16 LS Contribution 413.67 15.07 6.23 6.23 Total: -1.00 -32.72 413.67 -10.34 -43.06 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.90 Total: 4.40 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.16 Total: 2.90 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.24 Total: -54.39 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.25 Total: -19.64 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.72 -10.34 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121038603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.636 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds