Wall clock time and date at job start Tue Mar 31 2020 19:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47313 * 2 1 4 4 C 1.36936 * 119.99987 * 274.33221 * 3 2 1 5 5 H 1.08003 * 119.99818 * 337.80715 * 4 3 2 6 6 C 1.38814 * 120.00130 * 157.80363 * 4 3 2 7 7 N 1.31617 * 120.00172 * 7.73143 * 6 4 3 8 8 Si 1.86801 * 119.99846 * 187.73137 * 6 4 3 9 9 H 1.48504 * 109.47150 * 89.99940 * 8 6 4 10 10 H 1.48501 * 109.47230 * 209.99677 * 8 6 4 11 11 H 1.48495 * 109.47162 * 330.00083 * 8 6 4 12 12 C 1.46497 * 120.00200 * 94.33097 * 3 2 1 13 13 C 1.50701 * 109.47430 * 270.00052 * 12 3 2 14 14 O 1.21288 * 119.99499 * 359.97438 * 13 12 3 15 15 N 1.34773 * 120.00062 * 180.02562 * 13 12 3 16 16 C 1.46507 * 119.99867 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47185 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47178 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47233 * 179.97438 * 18 17 16 20 20 C 1.42894 * 114.00163 * 180.02562 * 19 18 17 21 21 H 1.09005 * 109.46813 * 30.00117 * 20 19 18 22 22 C 1.52996 * 109.47329 * 270.00648 * 20 19 18 23 23 C 1.50692 * 109.47143 * 150.00316 * 20 19 18 24 24 C 1.38239 * 120.00191 * 39.72774 * 23 20 19 25 25 C 1.38240 * 120.00086 * 179.78702 * 24 23 20 26 26 C 1.38236 * 119.99803 * 0.44539 * 25 24 23 27 27 C 1.38229 * 120.00104 * 359.80975 * 26 25 24 28 28 C 1.38236 * 120.00306 * 359.97438 * 27 26 25 29 29 H 1.08991 * 109.47436 * 300.00574 * 1 2 3 30 30 H 1.09006 * 109.46693 * 60.00596 * 1 2 3 31 31 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47335 * 239.99330 * 2 1 3 33 33 H 1.09003 * 109.46822 * 119.99922 * 2 1 3 34 34 H 0.96996 * 120.00273 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47246 * 149.99947 * 12 3 2 36 36 H 1.09004 * 109.47330 * 30.00097 * 12 3 2 37 37 H 0.96996 * 120.00410 * 0.02562 * 15 13 12 38 38 H 1.08999 * 109.47122 * 59.99769 * 16 15 13 39 39 H 1.08995 * 109.46824 * 300.00074 * 16 15 13 40 40 H 1.08997 * 109.46727 * 59.99691 * 17 16 15 41 41 H 1.09004 * 109.46928 * 300.00198 * 17 16 15 42 42 H 1.09009 * 109.46644 * 60.00560 * 18 17 16 43 43 H 1.08991 * 109.47410 * 300.00710 * 18 17 16 44 44 H 1.09010 * 109.47198 * 179.97438 * 22 20 19 45 45 H 1.09001 * 109.47207 * 299.99553 * 22 20 19 46 46 H 1.08999 * 109.47060 * 59.99808 * 22 20 19 47 47 H 1.08000 * 119.99636 * 0.02562 * 24 23 20 48 48 H 1.07994 * 119.99776 * 180.27759 * 25 24 23 49 49 H 1.07997 * 119.99516 * 179.83428 * 26 25 24 50 50 H 1.08004 * 120.00073 * 180.02562 * 27 26 25 51 51 H 1.08005 * 120.00086 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1622 2.0565 -1.1825 5 1 2.2701 1.5092 -2.1073 6 6 2.1691 3.4446 -1.1927 7 7 2.1909 4.1109 -0.0578 8 14 2.1474 4.3668 -2.8170 9 1 0.7417 4.6184 -3.2247 10 1 2.8566 5.6621 -2.6604 11 1 2.8264 3.5533 -3.8572 12 6 2.3529 2.0398 1.2651 13 6 1.1319 2.7380 1.8062 14 8 0.0854 2.6904 1.1950 15 7 1.2032 3.4161 2.9688 16 6 0.0160 4.0943 3.4951 17 6 0.3654 4.7823 4.8162 18 6 -0.8742 5.4912 5.3656 19 8 -0.5480 6.1333 6.5998 20 6 -1.6426 6.8281 7.2006 21 1 -2.5768 6.3335 6.9345 22 6 -1.6686 8.2723 6.6962 23 6 -1.4799 6.8221 8.6987 24 6 -0.2284 6.9981 9.2588 25 6 -0.0798 6.9970 10.6332 26 6 -1.1813 6.8107 11.4473 27 6 -2.4320 6.6294 10.8872 28 6 -2.5813 6.6350 9.5129 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.1954 5.0809 -0.0649 35 1 3.1442 2.7702 1.0963 36 1 2.6937 1.2945 1.9838 37 1 2.0404 3.4550 3.4570 38 1 -0.7748 3.3636 3.6645 39 1 -0.3254 4.8391 2.7763 40 1 1.1564 5.5130 4.6472 41 1 0.7067 4.0371 5.5348 42 1 -1.6654 4.7607 5.5345 43 1 -1.2151 6.2363 4.6469 44 1 -2.5040 8.8021 7.1542 45 1 -0.7345 8.7669 6.9622 46 1 -1.7863 8.2766 5.6126 47 1 0.6327 7.1403 8.6226 48 1 0.8973 7.1390 11.0707 49 1 -1.0648 6.8072 12.5209 50 1 -3.2927 6.4842 11.5232 51 1 -3.5584 6.4929 9.0753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121038603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:24 Heat of formation + Delta-G solvation = -56.714485 kcal Electronic energy + Delta-G solvation = -28290.547748 eV Core-core repulsion = 24382.893695 eV Total energy + Delta-G solvation = -3907.654053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.54428 -40.07802 -38.86294 -37.36163 -35.91795 -33.94659 -33.71219 -32.23487 -31.74821 -30.81497 -30.06358 -28.65457 -26.33589 -25.19375 -24.51943 -23.44119 -22.62306 -22.23927 -21.67841 -20.95052 -18.79854 -18.03145 -17.67559 -17.32035 -17.14146 -16.90630 -16.48502 -16.26071 -15.84379 -15.54269 -15.36897 -15.27408 -15.00200 -14.57274 -14.37763 -14.22156 -14.03621 -13.87152 -13.69659 -13.44927 -13.32746 -13.11651 -13.02105 -12.88057 -12.76061 -12.60003 -12.56114 -12.26142 -12.13929 -12.07261 -11.95408 -11.85694 -11.73586 -11.60691 -11.40725 -10.74043 -10.60541 -10.12599 -9.80660 -9.66160 -9.57867 -8.69868 -7.82617 -5.21199 0.40677 0.51751 1.43570 1.48783 1.53506 2.37290 2.46375 2.64959 2.88349 3.01511 3.40004 3.73335 3.77279 3.95338 3.96828 4.07762 4.15422 4.19415 4.24921 4.30336 4.32875 4.47124 4.51027 4.54031 4.62272 4.62799 4.66853 4.73552 4.77649 4.81486 4.85728 4.89606 5.03393 5.08876 5.10169 5.14493 5.17288 5.22672 5.27347 5.32516 5.49775 5.57647 5.63674 5.64368 5.64979 5.72399 6.02767 6.11545 6.26550 6.39860 7.08325 7.26876 7.88379 8.14613 8.33310 9.20575 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.001939 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.677139 B =14436.974392 C =15124.589670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 N -0.596 5.596 4 C -0.249 4.249 5 H 0.071 0.929 6 C -0.044 4.044 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.304 1.304 10 H -0.292 1.292 11 H -0.269 1.269 12 C 0.164 3.836 13 C 0.529 3.471 14 O -0.586 6.586 15 N -0.738 5.738 16 C 0.139 3.861 17 C -0.110 4.110 18 C 0.070 3.930 19 O -0.390 6.390 20 C 0.123 3.877 21 H 0.078 0.922 22 C -0.166 4.166 23 C -0.100 4.100 24 C -0.111 4.111 25 C -0.132 4.132 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.122 4.122 29 H 0.035 0.965 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.243 0.757 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.402 0.598 38 H 0.048 0.952 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.118 0.882 48 H 0.136 0.864 49 H 0.143 0.857 50 H 0.145 0.855 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 5.304 23.742 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 N -0.317 5.317 4 C -0.379 4.379 5 H 0.088 0.912 6 C -0.238 4.238 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.233 1.233 10 H -0.219 1.219 11 H -0.193 1.193 12 C 0.034 3.966 13 C 0.317 3.683 14 O -0.465 6.465 15 N -0.392 5.392 16 C 0.014 3.986 17 C -0.148 4.148 18 C -0.007 4.007 19 O -0.310 6.310 20 C 0.066 3.934 21 H 0.096 0.904 22 C -0.224 4.224 23 C -0.100 4.100 24 C -0.129 4.129 25 C -0.150 4.150 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.140 4.140 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.237 0.763 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.136 0.864 48 H 0.154 0.846 49 H 0.161 0.839 50 H 0.162 0.838 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.569 5.382 23.335 24.833 hybrid contribution -0.172 1.051 -1.128 1.551 sum -6.742 6.433 22.207 24.083 Atomic orbital electron populations 1.22166 0.99210 0.99228 1.00228 1.21037 0.92396 0.85164 0.99951 1.44002 1.74458 1.11004 1.02221 1.19450 1.41938 0.89281 0.87212 0.91163 1.25551 1.01400 0.97448 0.99429 1.69825 1.56455 1.05672 1.24605 0.85338 0.76453 0.78122 0.80870 1.23266 1.21889 1.19335 1.20722 0.94291 0.95424 0.86190 1.22076 0.90913 0.77547 0.77784 1.90459 1.33713 1.63818 1.58464 1.45922 1.13222 1.55475 1.24624 1.20810 0.88819 0.95130 0.93874 1.21477 0.98244 1.00048 0.94991 1.22367 0.97130 0.95730 0.85514 1.87882 1.36217 1.69741 1.37170 1.20973 0.90042 0.93222 0.89210 0.90424 1.22240 1.03052 0.95480 1.01580 1.19885 0.94508 1.01393 0.94200 1.21112 0.97137 0.99122 0.95499 1.21447 1.00017 1.00161 0.93362 1.21512 0.92686 0.99158 1.00998 1.21435 0.98415 0.99800 0.94811 1.21239 0.98508 1.00065 0.94142 0.94610 0.96238 0.92000 0.93206 0.91821 0.94694 0.88378 0.92346 0.76335 0.93323 0.95150 0.90755 0.89723 0.92278 0.92931 0.90250 0.92319 0.92030 0.86392 0.84579 0.83931 0.83759 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 9.65 71.98 0.69 -5.62 16 2 C 0.14 5.88 6.44 86.38 0.56 6.43 16 3 N -0.60 -29.92 2.07 -706.34 -1.46 -31.38 16 4 C -0.25 -13.80 9.70 84.03 0.81 -12.98 16 5 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 6 C -0.04 -2.46 5.41 84.86 0.46 -2.00 16 7 N -0.92 -51.88 8.21 21.65 0.18 -51.70 16 8 Si 0.96 46.73 29.56 68.60 2.03 48.76 16 9 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 10 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.16 7.58 5.47 85.63 0.47 8.04 16 13 C 0.53 25.00 5.79 87.66 0.51 25.51 16 14 O -0.59 -32.92 13.89 -3.05 -0.04 -32.96 16 15 N -0.74 -27.47 5.56 -463.05 -2.57 -30.04 16 16 C 0.14 4.60 5.67 86.38 0.49 5.09 16 17 C -0.11 -2.72 5.70 30.59 0.17 -2.54 16 18 C 0.07 1.56 5.75 71.98 0.41 1.98 16 19 O -0.39 -9.00 9.30 -148.98 -1.39 -10.39 16 20 C 0.12 2.33 2.93 29.84 0.09 2.41 16 21 H 0.08 1.29 7.65 -2.38 -0.02 1.27 16 22 C -0.17 -2.83 9.51 71.98 0.68 -2.15 16 23 C -0.10 -1.89 4.97 -19.87 -0.10 -1.99 16 24 C -0.11 -2.15 9.36 22.27 0.21 -1.94 16 25 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 26 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 27 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 28 C -0.12 -1.91 9.67 22.27 0.22 -1.69 16 29 H 0.03 1.66 6.39 -2.39 -0.02 1.64 16 30 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.98 8.07 -2.39 -0.02 1.97 16 33 H 0.06 2.30 7.84 -2.39 -0.02 2.28 16 34 H 0.24 13.80 8.31 -92.71 -0.77 13.02 16 35 H 0.10 4.94 6.24 -2.39 -0.01 4.92 16 36 H 0.06 2.27 7.86 -2.38 -0.02 2.25 16 37 H 0.40 12.49 8.47 -92.71 -0.79 11.70 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.06 1.23 8.08 -2.38 -0.02 1.21 16 43 H 0.05 1.17 7.87 -2.39 -0.02 1.15 16 44 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 1.06 7.87 -2.39 -0.02 1.04 16 47 H 0.12 2.41 7.77 -2.91 -0.02 2.39 16 48 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 49 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 50 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 51 H 0.14 1.61 8.04 -2.91 -0.02 1.58 16 Total: -1.00 -71.00 413.67 3.20 -67.80 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.11 Total: 26.26 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.35 Total: 13.66 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -3.86 Total: -113.13 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.43 Total: -43.35 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -71.00 3.20 -67.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121038603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.084 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds