Wall clock time and date at job start Tue Mar 31 2020 19:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46807 * 2 1 4 4 C 1.36939 * 119.99596 * 264.03444 * 3 2 1 5 5 H 1.08009 * 119.99664 * 188.07641 * 4 3 2 6 6 C 1.38809 * 120.00497 * 8.07902 * 4 3 2 7 7 N 1.31619 * 119.99760 * 25.12761 * 6 4 3 8 8 Si 1.86802 * 120.00190 * 205.12530 * 6 4 3 9 9 H 1.48497 * 109.46934 * 84.99067 * 8 6 4 10 10 H 1.48497 * 109.47086 * 204.99050 * 8 6 4 11 11 H 1.48494 * 109.47151 * 324.99196 * 8 6 4 12 12 C 1.46499 * 120.00229 * 84.04195 * 3 2 1 13 13 C 1.50702 * 109.46826 * 269.99586 * 12 3 2 14 14 O 1.21283 * 120.00087 * 359.97438 * 13 12 3 15 15 N 1.34776 * 119.99962 * 179.97438 * 13 12 3 16 16 C 1.46505 * 119.99872 * 0.02562 * 15 13 12 17 17 C 1.46501 * 120.00009 * 180.02562 * 15 13 12 18 18 C 1.52998 * 109.46917 * 270.00319 * 17 15 13 19 19 O 1.42894 * 109.47628 * 65.00187 * 18 17 15 20 20 C 1.35897 * 117.00634 * 180.02562 * 19 18 17 21 21 C 1.38733 * 120.05105 * 359.72182 * 20 19 18 22 22 C 1.38144 * 119.94261 * 179.74570 * 21 20 19 23 23 C 1.50704 * 119.97462 * 180.27562 * 22 21 20 24 24 C 1.38265 * 120.05497 * 0.51062 * 22 21 20 25 25 C 1.38267 * 120.11198 * 359.76259 * 24 22 21 26 26 C 1.50703 * 119.97056 * 179.97438 * 25 24 22 27 27 C 1.38142 * 120.05363 * 359.97438 * 25 24 22 28 28 H 1.09003 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47025 * 299.99992 * 1 2 3 30 30 H 1.09000 * 109.47030 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46692 * 240.00011 * 2 1 3 32 32 H 1.09000 * 109.47030 * 120.00176 * 2 1 3 33 33 H 0.97000 * 119.99775 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47207 * 149.99865 * 12 3 2 35 35 H 1.08997 * 109.47102 * 29.99456 * 12 3 2 36 36 H 1.09001 * 109.46695 * 269.99756 * 16 15 13 37 37 H 1.08991 * 109.47067 * 29.99732 * 16 15 13 38 38 H 1.09000 * 109.46607 * 150.00034 * 16 15 13 39 39 H 1.09001 * 109.47227 * 149.99983 * 17 15 13 40 40 H 1.08999 * 109.47145 * 30.00209 * 17 15 13 41 41 H 1.09001 * 109.47082 * 304.99354 * 18 17 15 42 42 H 1.09001 * 109.47215 * 185.00094 * 18 17 15 43 43 H 1.07995 * 120.02929 * 359.97438 * 21 20 19 44 44 H 1.08997 * 109.46951 * 270.23147 * 23 22 21 45 45 H 1.08998 * 109.46624 * 30.23252 * 23 22 21 46 46 H 1.08995 * 109.46873 * 150.23337 * 23 22 21 47 47 H 1.08006 * 119.94774 * 179.74495 * 24 22 21 48 48 H 1.08994 * 109.47454 * 269.97902 * 26 25 24 49 49 H 1.09002 * 109.47137 * 29.98769 * 26 25 24 50 50 H 1.09004 * 109.46386 * 149.97959 * 26 25 24 51 51 H 1.08005 * 120.02408 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3627 1.9856 -1.1796 5 1 2.8437 2.9527 -1.1705 6 6 2.0936 1.3556 -2.3868 7 7 1.1178 0.4760 -2.4669 8 14 3.1165 1.7561 -3.8977 9 1 4.3450 0.9220 -3.8991 10 1 2.3242 1.4723 -5.1212 11 1 3.4932 3.1922 -3.8740 12 6 2.1383 2.1158 1.2618 13 6 0.8471 2.8387 1.5469 14 8 -0.0817 2.7495 0.7721 15 7 0.7245 3.5843 2.6629 16 6 1.8466 3.6925 3.5986 17 6 -0.5310 4.2867 2.9403 18 6 -0.4813 5.6843 2.3198 19 8 -0.4177 5.5717 0.8967 20 6 -0.3670 6.7300 0.1878 21 6 -0.3842 7.9500 0.8481 22 6 -0.3273 9.1260 0.1254 23 6 -0.3396 10.4516 0.8423 24 6 -0.2640 9.0880 -1.2552 25 6 -0.2525 7.8734 -1.9159 26 6 -0.1840 7.8357 -3.4209 27 6 -0.3037 6.6946 -1.1976 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.9300 0.0355 -3.3104 34 1 2.9503 2.8389 1.1855 35 1 2.3494 1.4164 2.0707 36 1 1.7781 2.8978 4.3414 37 1 2.7852 3.5995 3.0525 38 1 1.8111 4.6608 4.0979 39 1 -0.6689 4.3723 4.0182 40 1 -1.3625 3.7278 2.5109 41 1 0.4010 6.2117 2.6825 42 1 -1.3768 6.2386 2.6007 43 1 -0.4382 7.9803 1.9262 44 1 -1.3690 10.7873 0.9675 45 1 0.1277 10.3398 1.8206 46 1 0.2135 11.1862 0.2571 47 1 -0.2238 10.0086 -1.8187 48 1 -1.1939 7.8422 -3.8309 49 1 0.3603 8.7084 -3.7819 50 1 0.3313 6.9292 -3.7385 51 1 -0.2951 5.7461 -1.7142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121043957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:14 Heat of formation + Delta-G solvation = -13.419246 kcal Electronic energy + Delta-G solvation = -30256.991578 eV Core-core repulsion = 26351.214947 eV Total energy + Delta-G solvation = -3905.776631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.09763 -39.01581 -37.57686 -35.69561 -34.65706 -33.49174 -31.58706 -31.01899 -29.92722 -29.14904 -27.19198 -26.89590 -26.52224 -25.89619 -23.57697 -22.66464 -21.54743 -20.58331 -20.18341 -18.52306 -17.47943 -16.68108 -16.37246 -16.09501 -15.93821 -15.69925 -15.12703 -14.81439 -14.49451 -13.88081 -13.80076 -13.60000 -13.33100 -13.23365 -13.19704 -12.90388 -12.68531 -12.54953 -12.36836 -12.29631 -12.15163 -11.98635 -11.70478 -11.66687 -11.45832 -11.36828 -11.30316 -11.14053 -10.73491 -10.64974 -10.62911 -10.50286 -10.32579 -9.85931 -9.58041 -9.21487 -8.79996 -8.51373 -8.17801 -8.10457 -7.93752 -6.78079 -5.62538 -2.93877 1.43195 1.60971 3.37041 3.45739 3.52368 3.54635 3.57338 3.73714 3.85404 4.60366 4.73832 4.82220 5.04456 5.07600 5.11836 5.16057 5.28930 5.31730 5.35066 5.40841 5.43368 5.45585 5.49265 5.55126 5.65442 5.68046 5.70180 5.72418 5.77734 5.82753 5.85760 6.07200 6.14053 6.23864 6.25525 6.35259 6.51403 6.60660 6.71251 6.75006 6.94939 7.02870 7.11489 7.26712 7.36694 7.73025 7.77017 7.94331 8.06641 8.40089 8.46754 9.24133 9.35895 9.95959 10.39718 11.40821 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.004401 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.070759 B = 6360.016827 C = 8520.288376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 N -0.569 5.569 4 C -0.242 4.242 5 H 0.072 0.928 6 C 0.001 3.999 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.135 3.865 13 C 0.472 3.528 14 O -0.485 6.485 15 N -0.637 5.637 16 C 0.086 3.914 17 C 0.117 3.883 18 C 0.045 3.955 19 O -0.282 6.282 20 C 0.146 3.854 21 C -0.223 4.223 22 C -0.052 4.052 23 C -0.111 4.111 24 C -0.168 4.168 25 C -0.044 4.044 26 C -0.116 4.116 27 C -0.152 4.152 28 H 0.008 0.992 29 H 0.016 0.984 30 H 0.091 0.909 31 H 0.090 0.910 32 H -0.001 1.001 33 H 0.250 0.750 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.122 0.878 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.118 0.882 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 15.175 11.468 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.042 3.958 3 N -0.288 5.288 4 C -0.372 4.372 5 H 0.090 0.910 6 C -0.197 4.197 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.003 3.997 13 C 0.257 3.743 14 O -0.354 6.354 15 N -0.377 5.377 16 C -0.058 4.058 17 C -0.007 4.007 18 C -0.032 4.032 19 O -0.195 6.195 20 C 0.100 3.900 21 C -0.242 4.242 22 C -0.052 4.052 23 C -0.168 4.168 24 C -0.186 4.186 25 C -0.044 4.044 26 C -0.172 4.172 27 C -0.170 4.170 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.139 0.861 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.136 0.864 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.222 14.749 10.743 18.382 hybrid contribution 0.269 0.592 -0.378 0.752 sum -1.953 15.342 10.365 18.618 Atomic orbital electron populations 1.22253 0.98580 0.96965 1.02139 1.20920 0.93032 0.83884 0.97983 1.44288 1.73781 1.09626 1.01074 1.19204 1.31051 1.03372 0.83525 0.91034 1.24701 0.97721 1.00140 0.97094 1.70225 1.27119 1.31417 1.24622 0.86378 0.80332 0.77809 0.82848 1.21643 1.21987 1.20792 1.20934 0.92972 0.94938 0.90867 1.23505 0.93093 0.78482 0.79228 1.90696 1.40636 1.59545 1.44560 1.48478 1.13249 1.51375 1.24571 1.21631 0.90202 1.00686 0.93275 1.21326 0.89890 0.90847 0.98676 1.23288 1.00490 0.99439 0.80027 1.86417 1.87310 1.27222 1.18515 1.19077 0.94107 0.85078 0.91769 1.21018 1.11682 0.91778 0.99689 1.19588 0.97411 0.94555 0.93612 1.20766 1.02115 0.93943 0.99988 1.20713 1.07247 0.97154 0.93493 1.19680 0.96544 0.92169 0.95976 1.20818 1.02405 1.03110 0.90902 1.20473 1.06216 0.99225 0.91131 0.97257 0.96465 0.89000 0.89221 0.98236 0.93978 0.91190 0.91847 0.93357 0.91014 0.92382 0.89527 0.89243 0.92525 0.92122 0.86058 0.91286 0.91791 0.91569 0.86416 0.91008 0.91571 0.90898 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.71 37.16 0.32 -3.30 16 2 C 0.17 4.24 5.64 -4.04 -0.02 4.22 16 3 N -0.57 -14.64 2.12 -174.60 -0.37 -15.01 16 4 C -0.24 -6.82 9.70 -15.06 -0.15 -6.97 16 5 H 0.07 2.01 7.93 -52.48 -0.42 1.59 16 6 C 0.00 0.03 4.90 -17.43 -0.09 -0.06 16 7 N -0.89 -26.09 8.60 55.49 0.48 -25.61 16 8 Si 0.90 22.29 29.62 -169.99 -5.04 17.26 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.14 2.82 4.74 -5.19 -0.02 2.79 16 13 C 0.47 9.86 7.02 -10.98 -0.08 9.78 16 14 O -0.48 -12.43 12.83 -2.22 -0.03 -12.46 16 15 N -0.64 -9.95 2.86 -181.57 -0.52 -10.47 16 16 C 0.09 0.95 10.24 59.85 0.61 1.56 16 17 C 0.12 1.59 5.86 -4.04 -0.02 1.57 16 18 C 0.04 0.60 5.08 37.16 0.19 0.79 16 19 O -0.28 -5.24 8.92 -27.19 -0.24 -5.49 16 20 C 0.15 2.51 6.69 -39.22 -0.26 2.25 16 21 C -0.22 -3.13 8.69 -39.43 -0.34 -3.47 16 22 C -0.05 -0.65 5.88 -104.64 -0.62 -1.27 16 23 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 24 C -0.17 -2.20 9.35 -39.56 -0.37 -2.57 16 25 C -0.04 -0.65 5.88 -104.64 -0.62 -1.26 16 26 C -0.12 -1.44 10.01 36.01 0.36 -1.08 16 27 C -0.15 -2.69 9.64 -39.44 -0.38 -3.07 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.02 0.42 6.42 -51.93 -0.33 0.09 16 30 H 0.09 2.74 6.35 -51.93 -0.33 2.41 16 31 H 0.09 2.50 5.83 -51.93 -0.30 2.19 16 32 H 0.00 -0.01 7.98 -51.93 -0.41 -0.43 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.07 1.36 7.29 -51.93 -0.38 0.99 16 35 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 38 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 39 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.09 1.45 7.42 -51.93 -0.39 1.07 16 41 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 42 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 43 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 46 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 47 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 50 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 51 H 0.14 2.68 8.06 -52.48 -0.42 2.25 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -34.78 404.98 -9.35 -44.13 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.62 Total: 2.28 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.12 Total: -0.73 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.41 Total: -51.09 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.27 Total: -17.95 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.04 Total: 17.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.78 -9.35 -44.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121043957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.711 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds