Wall clock time and date at job start Tue Mar 31 2020 19:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46807 * 2 1 4 4 C 1.36939 * 119.99596 * 264.03444 * 3 2 1 5 5 H 1.08009 * 119.99664 * 188.07641 * 4 3 2 6 6 C 1.38809 * 120.00497 * 8.07902 * 4 3 2 7 7 N 1.31619 * 119.99760 * 25.12761 * 6 4 3 8 8 Si 1.86802 * 120.00190 * 205.12530 * 6 4 3 9 9 H 1.48497 * 109.46934 * 84.99067 * 8 6 4 10 10 H 1.48497 * 109.47086 * 204.99050 * 8 6 4 11 11 H 1.48494 * 109.47151 * 324.99196 * 8 6 4 12 12 C 1.46499 * 120.00229 * 84.04195 * 3 2 1 13 13 C 1.50702 * 109.46826 * 269.99586 * 12 3 2 14 14 O 1.21283 * 120.00087 * 359.97438 * 13 12 3 15 15 N 1.34776 * 119.99962 * 179.97438 * 13 12 3 16 16 C 1.46505 * 119.99872 * 0.02562 * 15 13 12 17 17 C 1.46501 * 120.00009 * 180.02562 * 15 13 12 18 18 C 1.52998 * 109.46917 * 270.00319 * 17 15 13 19 19 O 1.42894 * 109.47628 * 65.00187 * 18 17 15 20 20 C 1.35897 * 117.00634 * 180.02562 * 19 18 17 21 21 C 1.38733 * 120.05105 * 359.72182 * 20 19 18 22 22 C 1.38144 * 119.94261 * 179.74570 * 21 20 19 23 23 C 1.50704 * 119.97462 * 180.27562 * 22 21 20 24 24 C 1.38265 * 120.05497 * 0.51062 * 22 21 20 25 25 C 1.38267 * 120.11198 * 359.76259 * 24 22 21 26 26 C 1.50703 * 119.97056 * 179.97438 * 25 24 22 27 27 C 1.38142 * 120.05363 * 359.97438 * 25 24 22 28 28 H 1.09003 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47025 * 299.99992 * 1 2 3 30 30 H 1.09000 * 109.47030 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46692 * 240.00011 * 2 1 3 32 32 H 1.09000 * 109.47030 * 120.00176 * 2 1 3 33 33 H 0.97000 * 119.99775 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47207 * 149.99865 * 12 3 2 35 35 H 1.08997 * 109.47102 * 29.99456 * 12 3 2 36 36 H 1.09001 * 109.46695 * 269.99756 * 16 15 13 37 37 H 1.08991 * 109.47067 * 29.99732 * 16 15 13 38 38 H 1.09000 * 109.46607 * 150.00034 * 16 15 13 39 39 H 1.09001 * 109.47227 * 149.99983 * 17 15 13 40 40 H 1.08999 * 109.47145 * 30.00209 * 17 15 13 41 41 H 1.09001 * 109.47082 * 304.99354 * 18 17 15 42 42 H 1.09001 * 109.47215 * 185.00094 * 18 17 15 43 43 H 1.07995 * 120.02929 * 359.97438 * 21 20 19 44 44 H 1.08997 * 109.46951 * 270.23147 * 23 22 21 45 45 H 1.08998 * 109.46624 * 30.23252 * 23 22 21 46 46 H 1.08995 * 109.46873 * 150.23337 * 23 22 21 47 47 H 1.08006 * 119.94774 * 179.74495 * 24 22 21 48 48 H 1.08994 * 109.47454 * 269.97902 * 26 25 24 49 49 H 1.09002 * 109.47137 * 29.98769 * 26 25 24 50 50 H 1.09004 * 109.46386 * 149.97959 * 26 25 24 51 51 H 1.08005 * 120.02408 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3627 1.9856 -1.1796 5 1 2.8437 2.9527 -1.1705 6 6 2.0936 1.3556 -2.3868 7 7 1.1178 0.4760 -2.4669 8 14 3.1165 1.7561 -3.8977 9 1 4.3450 0.9220 -3.8991 10 1 2.3242 1.4723 -5.1212 11 1 3.4932 3.1922 -3.8740 12 6 2.1383 2.1158 1.2618 13 6 0.8471 2.8387 1.5469 14 8 -0.0817 2.7495 0.7721 15 7 0.7245 3.5843 2.6629 16 6 1.8466 3.6925 3.5986 17 6 -0.5310 4.2867 2.9403 18 6 -0.4813 5.6843 2.3198 19 8 -0.4177 5.5717 0.8967 20 6 -0.3670 6.7300 0.1878 21 6 -0.3842 7.9500 0.8481 22 6 -0.3273 9.1260 0.1254 23 6 -0.3396 10.4516 0.8423 24 6 -0.2640 9.0880 -1.2552 25 6 -0.2525 7.8734 -1.9159 26 6 -0.1840 7.8357 -3.4209 27 6 -0.3037 6.6946 -1.1976 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.9300 0.0355 -3.3104 34 1 2.9503 2.8389 1.1855 35 1 2.3494 1.4164 2.0707 36 1 1.7781 2.8978 4.3414 37 1 2.7852 3.5995 3.0525 38 1 1.8111 4.6608 4.0979 39 1 -0.6689 4.3723 4.0182 40 1 -1.3625 3.7278 2.5109 41 1 0.4010 6.2117 2.6825 42 1 -1.3768 6.2386 2.6007 43 1 -0.4382 7.9803 1.9262 44 1 -1.3690 10.7873 0.9675 45 1 0.1277 10.3398 1.8206 46 1 0.2135 11.1862 0.2571 47 1 -0.2238 10.0086 -1.8187 48 1 -1.1939 7.8422 -3.8309 49 1 0.3603 8.7084 -3.7819 50 1 0.3313 6.9292 -3.7385 51 1 -0.2951 5.7461 -1.7142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121043957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:13 Heat of formation + Delta-G solvation = -33.537237 kcal Electronic energy + Delta-G solvation = -30257.863959 eV Core-core repulsion = 26351.214947 eV Total energy + Delta-G solvation = -3906.649012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.26894 -40.47829 -38.79804 -37.50531 -36.19493 -34.48673 -33.37106 -32.44782 -31.50224 -30.70036 -28.34168 -28.12144 -27.82442 -27.09038 -25.42512 -24.12755 -22.71110 -22.30793 -21.44836 -19.96989 -18.69280 -18.63513 -17.76693 -17.35621 -17.18525 -16.92713 -16.82073 -16.23063 -16.04642 -15.39951 -15.21101 -14.86112 -14.72541 -14.46963 -14.14053 -14.07410 -14.00015 -13.90935 -13.61728 -13.53307 -13.38495 -13.35024 -13.15130 -13.06441 -12.83667 -12.73369 -12.64697 -12.61202 -12.41436 -12.35640 -12.31859 -11.87750 -11.73502 -11.62584 -11.54127 -11.32254 -10.60746 -10.20993 -9.61604 -9.40463 -9.09450 -8.81705 -7.77478 -5.10012 0.31385 0.47974 1.45816 1.46698 1.54791 2.08757 2.22650 2.41388 2.56621 2.73191 3.30640 3.68995 3.75962 3.82107 3.99493 4.05212 4.08493 4.15761 4.25693 4.31780 4.38122 4.43645 4.46638 4.52882 4.60104 4.64952 4.67505 4.70720 4.71536 4.77997 4.85013 4.85463 4.93717 4.96491 5.01470 5.05261 5.08658 5.17244 5.29426 5.30755 5.36483 5.54620 5.57404 5.64172 5.81318 5.83652 5.93718 6.22063 6.34475 6.58901 6.68358 7.22053 7.67957 7.94730 8.30717 9.24418 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.004401 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.070759 B = 6360.016827 C = 8520.288376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.171 3.829 3 N -0.587 5.587 4 C -0.249 4.249 5 H 0.064 0.936 6 C -0.051 4.051 7 N -0.915 5.915 8 Si 0.957 3.043 9 H -0.279 1.279 10 H -0.299 1.299 11 H -0.280 1.280 12 C 0.131 3.869 13 C 0.469 3.531 14 O -0.546 6.546 15 N -0.630 5.630 16 C 0.077 3.923 17 C 0.116 3.884 18 C 0.040 3.960 19 O -0.326 6.326 20 C 0.124 3.876 21 C -0.222 4.222 22 C -0.046 4.046 23 C -0.109 4.109 24 C -0.169 4.169 25 C -0.049 4.049 26 C -0.115 4.115 27 C -0.198 4.198 28 H 0.024 0.976 29 H 0.014 0.986 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.243 0.757 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.148 0.852 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.150 0.850 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.051 0.949 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 18.346 14.416 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.046 3.954 3 N -0.307 5.307 4 C -0.379 4.379 5 H 0.081 0.919 6 C -0.246 4.246 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.205 1.205 12 C 0.001 3.999 13 C 0.255 3.745 14 O -0.421 6.421 15 N -0.367 5.367 16 C -0.065 4.065 17 C -0.007 4.007 18 C -0.036 4.036 19 O -0.240 6.240 20 C 0.078 3.922 21 C -0.240 4.240 22 C -0.046 4.046 23 C -0.165 4.165 24 C -0.187 4.187 25 C -0.049 4.049 26 C -0.172 4.172 27 C -0.217 4.217 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.157 0.843 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.165 0.835 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.167 0.833 48 H 0.101 0.899 49 H 0.112 0.888 50 H 0.070 0.930 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.130 17.964 13.782 22.670 hybrid contribution -0.080 -0.282 -1.124 1.161 sum -1.210 17.683 12.658 21.780 Atomic orbital electron populations 1.22003 0.99203 0.97029 0.99707 1.20782 0.92377 0.84209 0.98032 1.44372 1.74207 1.10160 1.01914 1.19363 1.30634 1.02976 0.84939 0.91851 1.25394 0.98734 1.00834 0.99643 1.70413 1.28304 1.32755 1.24664 0.85432 0.78903 0.77651 0.79435 1.20575 1.22642 1.20517 1.21121 0.93280 0.95739 0.89804 1.23133 0.92129 0.79034 0.80165 1.90690 1.42327 1.62003 1.47069 1.48276 1.15253 1.49663 1.23511 1.21971 0.88193 1.03587 0.92740 1.21567 0.87547 0.90189 1.01406 1.23537 1.02522 0.99669 0.77894 1.86383 1.87812 1.28725 1.21068 1.19304 0.95224 0.86078 0.91565 1.21271 1.11014 0.90763 1.00972 1.20139 0.94822 0.95950 0.93703 1.20853 1.03544 0.91720 1.00397 1.21097 1.06129 0.97254 0.94203 1.19951 0.95946 0.91983 0.97013 1.20865 1.03241 1.03295 0.89757 1.20425 1.10352 0.98588 0.92295 0.95744 0.96667 0.93484 0.91940 0.95081 0.94727 0.90046 0.88627 0.91029 0.91213 0.88978 0.84258 0.92763 0.90559 0.89636 0.83471 0.89706 0.90424 0.89976 0.83260 0.89906 0.88822 0.93000 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.43 8.71 71.98 0.63 -5.81 16 2 C 0.17 8.88 5.64 86.38 0.49 9.37 16 3 N -0.59 -30.92 2.12 -706.32 -1.49 -32.42 16 4 C -0.25 -14.58 9.70 84.03 0.82 -13.77 16 5 H 0.06 3.72 7.93 -2.91 -0.02 3.69 16 6 C -0.05 -3.03 4.90 84.86 0.42 -2.62 16 7 N -0.91 -56.54 8.60 21.65 0.19 -56.36 16 8 Si 0.96 47.81 29.62 68.60 2.03 49.84 16 9 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 12 C 0.13 5.42 4.74 85.63 0.41 5.83 16 13 C 0.47 19.88 7.02 87.66 0.62 20.50 16 14 O -0.55 -29.59 12.83 4.40 0.06 -29.54 16 15 N -0.63 -18.71 2.86 -846.75 -2.42 -21.13 16 16 C 0.08 1.42 10.24 127.77 1.31 2.73 16 17 C 0.12 2.98 5.86 86.38 0.51 3.49 16 18 C 0.04 1.01 5.08 71.98 0.37 1.38 16 19 O -0.33 -12.66 8.92 -84.95 -0.76 -13.42 16 20 C 0.12 4.44 6.69 22.51 0.15 4.59 16 21 C -0.22 -5.86 8.69 22.37 0.19 -5.67 16 22 C -0.05 -1.04 5.88 -19.88 -0.12 -1.16 16 23 C -0.11 -1.47 10.01 71.24 0.71 -0.75 16 24 C -0.17 -4.10 9.35 22.28 0.21 -3.89 16 25 C -0.05 -1.49 5.88 -19.88 -0.12 -1.60 16 26 C -0.12 -2.93 10.01 71.24 0.71 -2.22 16 27 C -0.20 -7.67 9.64 22.36 0.22 -7.45 16 28 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.01 0.77 6.42 -2.39 -0.02 0.75 16 30 H 0.05 2.95 6.35 -2.39 -0.02 2.94 16 31 H 0.06 3.59 5.83 -2.38 -0.01 3.58 16 32 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16 33 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.08 3.13 7.29 -2.39 -0.02 3.12 16 35 H 0.10 3.27 7.92 -2.39 -0.02 3.26 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.34 6.44 -2.39 -0.02 1.33 16 38 H 0.09 1.13 8.07 -2.39 -0.02 1.11 16 39 H 0.14 2.07 8.07 -2.39 -0.02 2.06 16 40 H 0.05 1.81 7.42 -2.39 -0.02 1.79 16 41 H 0.08 1.62 7.67 -2.39 -0.02 1.60 16 42 H 0.09 1.72 7.65 -2.39 -0.02 1.71 16 43 H 0.15 2.99 6.30 -2.91 -0.02 2.97 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 46 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 47 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 48 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 50 H 0.05 1.51 8.08 -2.38 -0.02 1.49 16 51 H 0.09 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -84.29 404.98 6.01 -78.28 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.90 Total: 21.79 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 7.51 Total: 2.95 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -3.73 Total: -109.90 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.70 Total: -42.96 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -84.29 6.01 -78.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121043957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.738 kcal (2) G-P(sol) polarization free energy of solvation -84.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds