Wall clock time and date at job start Tue Mar 31 2020 19:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46932 * 2 1 4 4 C 1.36933 * 119.99833 * 274.32943 * 3 2 1 5 5 H 1.07999 * 120.00077 * 337.80580 * 4 3 2 6 6 C 1.38808 * 119.99923 * 157.79885 * 4 3 2 7 7 N 1.31619 * 119.99858 * 7.74287 * 6 4 3 8 8 Si 1.86803 * 120.00230 * 187.73414 * 6 4 3 9 9 H 1.48498 * 109.46979 * 60.00558 * 8 6 4 10 10 H 1.48496 * 109.47109 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47145 * 300.00786 * 8 6 4 12 12 C 1.46496 * 119.99810 * 94.33206 * 3 2 1 13 13 C 1.50703 * 109.47482 * 269.99702 * 12 3 2 14 14 O 1.21280 * 119.99274 * 0.02562 * 13 12 3 15 15 N 1.34775 * 120.00154 * 180.02562 * 13 12 3 16 16 C 1.46496 * 119.99807 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47219 * 180.02562 * 16 15 13 18 18 C 1.38236 * 119.99687 * 90.00380 * 17 16 15 19 19 C 1.38237 * 119.99662 * 180.02562 * 18 17 16 20 20 C 1.38231 * 120.00036 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00102 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.47124 * 90.00005 * 21 20 19 23 23 C 1.42898 * 114.00089 * 180.02562 * 22 21 20 24 24 C 1.52993 * 109.47456 * 90.00035 * 23 22 21 25 25 C 1.53000 * 109.47199 * 210.00439 * 23 22 21 26 26 C 1.38240 * 120.00196 * 0.25578 * 20 19 18 27 27 C 1.38231 * 120.00010 * 270.02521 * 17 16 15 28 28 H 1.08997 * 109.46763 * 60.01051 * 1 2 3 29 29 H 1.09004 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47644 * 300.00458 * 1 2 3 31 31 H 1.08991 * 109.47644 * 239.99542 * 2 1 3 32 32 H 1.09009 * 109.46917 * 119.99396 * 2 1 3 33 33 H 0.97009 * 119.99917 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47141 * 149.99996 * 12 3 2 35 35 H 1.09000 * 109.47609 * 30.00395 * 12 3 2 36 36 H 0.96995 * 119.99745 * 0.02562 * 15 13 12 37 37 H 1.08998 * 109.46881 * 60.00531 * 16 15 13 38 38 H 1.09000 * 109.47632 * 300.00766 * 16 15 13 39 39 H 1.07998 * 119.99907 * 359.97438 * 18 17 16 40 40 H 1.08003 * 119.99645 * 179.97438 * 19 18 17 41 41 H 1.09005 * 109.47249 * 330.00629 * 21 20 19 42 42 H 1.09000 * 109.47576 * 210.00040 * 21 20 19 43 43 H 1.09008 * 109.47053 * 329.99814 * 23 22 21 44 44 H 1.09004 * 109.47678 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.47400 * 300.00177 * 24 23 22 46 46 H 1.08996 * 109.47575 * 59.99864 * 24 23 22 47 47 H 1.09003 * 109.47459 * 59.99393 * 25 23 22 48 48 H 1.08996 * 109.47258 * 180.02562 * 25 23 22 49 49 H 1.09008 * 109.46608 * 299.99648 * 25 23 22 50 50 H 1.08000 * 119.99819 * 179.72533 * 26 20 19 51 51 H 1.08003 * 120.00429 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1621 2.0566 -1.1825 5 1 2.2702 1.5093 -2.1073 6 6 2.1688 3.4446 -1.1927 7 7 2.1907 4.1109 -0.0578 8 14 2.1470 4.3670 -2.8170 9 1 0.9203 4.0087 -3.5732 10 1 2.1591 5.8288 -2.5563 11 1 3.3449 3.9965 -3.6127 12 6 2.3528 2.0399 1.2651 13 6 1.1318 2.7380 1.8063 14 8 0.0851 2.6897 1.1955 15 7 1.2030 3.4160 2.9689 16 6 0.0162 4.0951 3.4946 17 6 0.3605 4.7736 4.7954 18 6 0.8213 6.0769 4.7943 19 6 1.1377 6.6991 5.9875 20 6 0.9927 6.0182 7.1818 21 6 1.3382 6.6963 8.4825 22 8 0.1811 7.3595 8.9959 23 6 0.4018 8.0385 10.2338 24 6 0.8457 9.4758 9.9550 25 6 -0.8951 8.0536 11.0454 26 6 0.5365 4.7133 7.1825 27 6 0.2160 4.0926 5.9896 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8898 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 2.1958 5.0810 -0.0649 34 1 3.1440 2.7704 1.0963 35 1 2.6937 1.2946 1.9838 36 1 2.0402 3.4549 3.4571 37 1 -0.7752 3.3649 3.6637 38 1 -0.3246 4.8402 2.7756 39 1 0.9349 6.6087 3.8613 40 1 1.4981 7.7172 5.9867 41 1 2.1299 7.4261 8.3128 42 1 1.6789 5.9512 9.2015 43 1 1.1777 7.5216 10.7985 44 1 1.0144 9.9937 10.8992 45 1 1.7697 9.4651 9.3768 46 1 0.0698 9.9928 9.3903 47 1 -1.2114 7.0295 11.2440 48 1 -0.7270 8.5719 11.9894 49 1 -1.6711 8.5705 10.4807 50 1 0.4275 4.1798 8.1152 51 1 -0.1433 3.0740 5.9904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121059453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:55 Heat of formation + Delta-G solvation = -37.698072 kcal Electronic energy + Delta-G solvation = -28507.792034 eV Core-core repulsion = 24600.962595 eV Total energy + Delta-G solvation = -3906.829440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.71771 -38.52760 -37.96114 -35.47490 -34.18504 -33.00771 -31.74492 -31.22461 -30.92206 -29.13598 -27.79412 -27.48408 -26.18840 -24.05386 -23.18729 -22.70784 -21.64340 -20.80196 -20.38174 -19.23177 -17.23012 -16.94907 -16.44193 -16.00773 -15.85401 -15.16588 -15.00532 -14.83294 -14.61495 -14.45848 -13.85546 -13.62614 -13.45676 -13.39737 -13.26503 -13.13955 -12.77079 -12.60821 -12.53225 -12.37132 -12.05764 -11.92684 -11.78497 -11.72298 -11.47285 -11.11829 -11.06652 -10.93693 -10.88525 -10.84301 -10.69688 -10.34461 -10.00291 -9.87387 -9.81464 -9.63341 -8.88680 -8.86386 -8.65843 -8.09837 -7.90755 -6.72483 -5.73972 -3.12587 1.18894 1.44451 3.32168 3.43106 3.48765 3.51483 3.89320 4.36608 4.46578 4.49701 4.62164 4.67650 4.74685 4.75343 4.84455 4.96250 5.04093 5.09496 5.12526 5.22491 5.40351 5.44420 5.46955 5.47775 5.51658 5.61280 5.62021 5.80958 5.84625 5.89216 5.92106 6.14494 6.20020 6.21500 6.39805 6.48468 6.52126 6.54156 6.59367 6.72758 6.76488 6.93898 6.94804 7.00789 7.10672 7.39166 7.49355 7.60014 7.79984 8.41939 8.78566 9.26708 9.82224 9.96967 10.35857 11.32820 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.002139 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.188208 B =13088.046639 C =14025.665126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 N -0.579 5.579 4 C -0.239 4.239 5 H 0.072 0.928 6 C 0.006 3.994 7 N -0.909 5.909 8 Si 0.910 3.090 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.286 1.286 12 C 0.166 3.834 13 C 0.531 3.469 14 O -0.539 6.539 15 N -0.745 5.745 16 C 0.166 3.834 17 C -0.083 4.083 18 C -0.102 4.102 19 C -0.100 4.100 20 C -0.096 4.096 21 C 0.106 3.894 22 O -0.376 6.376 23 C 0.079 3.921 24 C -0.176 4.176 25 C -0.150 4.150 26 C -0.102 4.102 27 C -0.108 4.108 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.253 0.747 34 H 0.118 0.882 35 H 0.024 0.976 36 H 0.387 0.613 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.120 0.880 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 5.805 22.510 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 N -0.299 5.299 4 C -0.368 4.368 5 H 0.090 0.910 6 C -0.191 4.191 7 N -0.556 5.556 8 Si 0.740 3.260 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.213 1.213 12 C 0.036 3.964 13 C 0.318 3.682 14 O -0.414 6.414 15 N -0.400 5.400 16 C 0.042 3.958 17 C -0.083 4.083 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.097 4.097 21 C 0.030 3.970 22 O -0.295 6.295 23 C 0.021 3.979 24 C -0.233 4.233 25 C -0.207 4.207 26 C -0.120 4.120 27 C -0.126 4.126 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.135 0.865 35 H 0.042 0.958 36 H 0.219 0.781 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.138 0.862 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.063 5.894 21.889 22.693 hybrid contribution 0.332 0.980 -0.480 1.141 sum -0.731 6.874 21.408 22.497 Atomic orbital electron populations 1.22332 0.99154 0.97723 1.02963 1.20851 0.92529 0.86585 0.98162 1.43776 1.73951 1.09817 1.02323 1.19180 1.42547 0.88885 0.86200 0.90979 1.24917 1.00651 0.96563 0.96930 1.69652 1.55675 1.06503 1.23772 0.86249 0.77783 0.78607 0.83320 1.21258 1.21833 1.21280 1.20722 0.94838 0.94939 0.85887 1.22119 0.91598 0.77419 0.77065 1.90485 1.32160 1.62026 1.56715 1.46250 1.11594 1.56563 1.25627 1.19922 0.89803 0.95771 0.90332 1.20178 0.98465 0.94408 0.95267 1.21157 0.98108 0.94670 0.98167 1.20995 0.99587 0.99391 0.91846 1.19508 1.02040 0.94458 0.93648 1.21328 0.88105 0.94944 0.92644 1.88044 1.34285 1.69178 1.38041 1.22087 0.97853 0.92440 0.85500 1.22307 1.02000 0.96892 1.02139 1.21862 0.97018 1.02731 0.99092 1.20965 0.98621 0.94430 0.97996 1.21083 0.99883 0.99905 0.91736 0.93092 0.95761 0.92416 0.94089 0.94666 0.93634 0.86482 0.95783 0.78124 0.92211 0.91769 0.85523 0.86176 0.92626 0.92618 0.92311 0.91732 0.92466 0.91685 0.91980 0.91343 0.91739 0.86204 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.65 37.16 0.36 -3.15 16 2 C 0.15 3.16 6.44 -4.04 -0.03 3.13 16 3 N -0.58 -14.62 2.07 -174.61 -0.36 -14.98 16 4 C -0.24 -6.60 9.70 -15.06 -0.15 -6.74 16 5 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 6 C 0.01 0.16 5.41 -17.43 -0.09 0.07 16 7 N -0.91 -25.23 8.21 55.49 0.46 -24.78 16 8 Si 0.91 22.47 29.56 -169.99 -5.03 17.44 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.17 3.89 5.47 -5.19 -0.03 3.86 16 13 C 0.53 12.47 5.79 -10.98 -0.06 12.40 16 14 O -0.54 -14.83 13.88 5.56 0.08 -14.76 16 15 N -0.74 -14.11 5.55 -61.47 -0.34 -14.45 16 16 C 0.17 2.87 5.80 -5.20 -0.03 2.84 16 17 C -0.08 -1.17 5.25 -104.62 -0.55 -1.72 16 18 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 19 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 20 C -0.10 -1.10 5.51 -104.62 -0.58 -1.68 16 21 C 0.11 1.00 5.87 36.01 0.21 1.21 16 22 O -0.38 -3.97 9.97 -35.23 -0.35 -4.32 16 23 C 0.08 0.60 3.34 -26.73 -0.09 0.51 16 24 C -0.18 -1.18 9.53 37.15 0.35 -0.83 16 25 C -0.15 -0.99 9.56 37.16 0.36 -0.64 16 26 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 27 C -0.11 -1.35 9.70 -39.59 -0.38 -1.74 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.35 6.38 -51.93 -0.33 1.02 16 31 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.03 0.68 7.84 -51.92 -0.41 0.27 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.12 2.94 6.24 -51.93 -0.32 2.62 16 35 H 0.02 0.49 7.86 -51.93 -0.41 0.09 16 36 H 0.39 6.47 8.46 -40.82 -0.35 6.12 16 37 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 39 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 41 H 0.06 0.46 7.81 -51.93 -0.41 0.06 16 42 H 0.06 0.44 8.03 -51.93 -0.42 0.03 16 43 H 0.06 0.38 7.79 -51.92 -0.40 -0.03 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.38 7.87 -51.93 -0.41 -0.02 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 51 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 414.59 15.07 6.25 6.25 Total: -1.00 -32.25 414.59 -10.07 -42.32 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.91 Total: 4.67 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.86 Total: 2.61 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.25 Total: -54.21 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.27 Total: -19.08 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.25 -10.07 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121059453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.622 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds