Wall clock time and date at job start Tue Mar 31 2020 19:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46932 * 2 1 4 4 C 1.36933 * 119.99833 * 274.32943 * 3 2 1 5 5 H 1.07999 * 120.00077 * 337.80580 * 4 3 2 6 6 C 1.38808 * 119.99923 * 157.79885 * 4 3 2 7 7 N 1.31619 * 119.99858 * 7.74287 * 6 4 3 8 8 Si 1.86803 * 120.00230 * 187.73414 * 6 4 3 9 9 H 1.48498 * 109.46979 * 60.00558 * 8 6 4 10 10 H 1.48496 * 109.47109 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47145 * 300.00786 * 8 6 4 12 12 C 1.46496 * 119.99810 * 94.33206 * 3 2 1 13 13 C 1.50703 * 109.47482 * 269.99702 * 12 3 2 14 14 O 1.21280 * 119.99274 * 0.02562 * 13 12 3 15 15 N 1.34775 * 120.00154 * 180.02562 * 13 12 3 16 16 C 1.46496 * 119.99807 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47219 * 180.02562 * 16 15 13 18 18 C 1.38236 * 119.99687 * 90.00380 * 17 16 15 19 19 C 1.38237 * 119.99662 * 180.02562 * 18 17 16 20 20 C 1.38231 * 120.00036 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00102 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.47124 * 90.00005 * 21 20 19 23 23 C 1.42898 * 114.00089 * 180.02562 * 22 21 20 24 24 C 1.52993 * 109.47456 * 90.00035 * 23 22 21 25 25 C 1.53000 * 109.47199 * 210.00439 * 23 22 21 26 26 C 1.38240 * 120.00196 * 0.25578 * 20 19 18 27 27 C 1.38231 * 120.00010 * 270.02521 * 17 16 15 28 28 H 1.08997 * 109.46763 * 60.01051 * 1 2 3 29 29 H 1.09004 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47644 * 300.00458 * 1 2 3 31 31 H 1.08991 * 109.47644 * 239.99542 * 2 1 3 32 32 H 1.09009 * 109.46917 * 119.99396 * 2 1 3 33 33 H 0.97009 * 119.99917 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47141 * 149.99996 * 12 3 2 35 35 H 1.09000 * 109.47609 * 30.00395 * 12 3 2 36 36 H 0.96995 * 119.99745 * 0.02562 * 15 13 12 37 37 H 1.08998 * 109.46881 * 60.00531 * 16 15 13 38 38 H 1.09000 * 109.47632 * 300.00766 * 16 15 13 39 39 H 1.07998 * 119.99907 * 359.97438 * 18 17 16 40 40 H 1.08003 * 119.99645 * 179.97438 * 19 18 17 41 41 H 1.09005 * 109.47249 * 330.00629 * 21 20 19 42 42 H 1.09000 * 109.47576 * 210.00040 * 21 20 19 43 43 H 1.09008 * 109.47053 * 329.99814 * 23 22 21 44 44 H 1.09004 * 109.47678 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.47400 * 300.00177 * 24 23 22 46 46 H 1.08996 * 109.47575 * 59.99864 * 24 23 22 47 47 H 1.09003 * 109.47459 * 59.99393 * 25 23 22 48 48 H 1.08996 * 109.47258 * 180.02562 * 25 23 22 49 49 H 1.09008 * 109.46608 * 299.99648 * 25 23 22 50 50 H 1.08000 * 119.99819 * 179.72533 * 26 20 19 51 51 H 1.08003 * 120.00429 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1621 2.0566 -1.1825 5 1 2.2702 1.5093 -2.1073 6 6 2.1688 3.4446 -1.1927 7 7 2.1907 4.1109 -0.0578 8 14 2.1470 4.3670 -2.8170 9 1 0.9203 4.0087 -3.5732 10 1 2.1591 5.8288 -2.5563 11 1 3.3449 3.9965 -3.6127 12 6 2.3528 2.0399 1.2651 13 6 1.1318 2.7380 1.8063 14 8 0.0851 2.6897 1.1955 15 7 1.2030 3.4160 2.9689 16 6 0.0162 4.0951 3.4946 17 6 0.3605 4.7736 4.7954 18 6 0.8213 6.0769 4.7943 19 6 1.1377 6.6991 5.9875 20 6 0.9927 6.0182 7.1818 21 6 1.3382 6.6963 8.4825 22 8 0.1811 7.3595 8.9959 23 6 0.4018 8.0385 10.2338 24 6 0.8457 9.4758 9.9550 25 6 -0.8951 8.0536 11.0454 26 6 0.5365 4.7133 7.1825 27 6 0.2160 4.0926 5.9896 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8898 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 2.1958 5.0810 -0.0649 34 1 3.1440 2.7704 1.0963 35 1 2.6937 1.2946 1.9838 36 1 2.0402 3.4549 3.4571 37 1 -0.7752 3.3649 3.6637 38 1 -0.3246 4.8402 2.7756 39 1 0.9349 6.6087 3.8613 40 1 1.4981 7.7172 5.9867 41 1 2.1299 7.4261 8.3128 42 1 1.6789 5.9512 9.2015 43 1 1.1777 7.5216 10.7985 44 1 1.0144 9.9937 10.8992 45 1 1.7697 9.4651 9.3768 46 1 0.0698 9.9928 9.3903 47 1 -1.2114 7.0295 11.2440 48 1 -0.7270 8.5719 11.9894 49 1 -1.6711 8.5705 10.4807 50 1 0.4275 4.1798 8.1152 51 1 -0.1433 3.0740 5.9904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121059453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:54 Heat of formation + Delta-G solvation = -55.863476 kcal Electronic energy + Delta-G solvation = -28508.579745 eV Core-core repulsion = 24600.962595 eV Total energy + Delta-G solvation = -3907.617151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.74475 -39.91568 -39.04648 -37.26039 -35.58742 -33.93367 -33.71032 -32.36311 -31.89209 -30.91572 -29.17521 -28.14341 -27.66028 -25.57892 -24.72021 -23.67817 -22.29740 -22.20004 -21.73526 -21.03074 -18.85539 -17.96852 -17.69854 -17.10983 -17.00485 -16.85961 -16.47931 -15.91260 -15.82010 -15.64405 -15.30449 -15.21998 -14.92214 -14.45887 -14.34319 -14.20522 -13.98572 -13.82346 -13.61965 -13.42162 -13.22242 -13.17143 -13.03421 -12.96776 -12.84289 -12.75294 -12.55556 -12.32698 -12.28994 -11.98579 -11.91990 -11.87908 -11.75712 -11.59426 -11.41178 -10.73576 -10.51690 -10.23668 -9.86074 -9.66183 -9.59481 -8.68961 -7.82285 -5.20906 0.18901 0.47163 1.43717 1.49107 1.52321 2.42537 2.46347 2.64345 2.93844 3.18872 3.40662 3.71759 3.77147 3.83734 3.90805 4.08188 4.09634 4.15204 4.22263 4.32645 4.41538 4.47255 4.53827 4.57344 4.59643 4.75801 4.76647 4.79726 4.80288 4.89813 4.90716 4.93067 4.96743 5.00956 5.04064 5.14051 5.18409 5.30388 5.32666 5.34257 5.41883 5.49216 5.60932 5.64638 5.68409 5.72440 5.97481 6.03111 6.33872 6.39707 7.07130 7.26207 7.88100 8.13534 8.33290 9.20513 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.002139 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.188208 B =13088.046639 C =14025.665126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 N -0.595 5.595 4 C -0.251 4.251 5 H 0.070 0.930 6 C -0.043 4.043 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.295 1.295 10 H -0.298 1.298 11 H -0.272 1.272 12 C 0.165 3.835 13 C 0.530 3.470 14 O -0.585 6.585 15 N -0.730 5.730 16 C 0.176 3.824 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.103 4.103 20 C -0.095 4.095 21 C 0.106 3.894 22 O -0.400 6.400 23 C 0.072 3.928 24 C -0.174 4.174 25 C -0.149 4.149 26 C -0.100 4.100 27 C -0.107 4.107 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.243 0.757 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.400 0.600 37 H 0.056 0.944 38 H 0.034 0.966 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.052 0.948 50 H 0.146 0.854 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 5.432 24.967 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 N -0.316 5.316 4 C -0.380 4.380 5 H 0.088 0.912 6 C -0.237 4.237 7 N -0.565 5.565 8 Si 0.792 3.208 9 H -0.223 1.223 10 H -0.224 1.224 11 H -0.198 1.198 12 C 0.035 3.965 13 C 0.318 3.682 14 O -0.463 6.463 15 N -0.385 5.385 16 C 0.051 3.949 17 C -0.096 4.096 18 C -0.133 4.133 19 C -0.121 4.121 20 C -0.095 4.095 21 C 0.030 3.970 22 O -0.321 6.321 23 C 0.015 3.985 24 C -0.232 4.232 25 C -0.206 4.206 26 C -0.118 4.118 27 C -0.126 4.126 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.234 0.766 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.107 0.893 49 H 0.071 0.929 50 H 0.164 0.836 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.169 5.518 24.389 25.006 hybrid contribution 0.059 1.087 -1.127 1.567 sum -0.110 6.604 23.261 24.181 Atomic orbital electron populations 1.22165 0.99218 0.99222 1.00224 1.21041 0.92384 0.85159 0.99962 1.43994 1.74427 1.10988 1.02172 1.19402 1.42139 0.89281 0.87216 0.91178 1.25545 1.01357 0.97445 0.99398 1.69824 1.56328 1.05681 1.24617 0.85416 0.77618 0.77120 0.80620 1.22262 1.22401 1.19789 1.20705 0.94200 0.95375 0.86175 1.22115 0.90935 0.77470 0.77641 1.90463 1.33682 1.63804 1.58395 1.46000 1.12752 1.55221 1.24481 1.19792 0.88941 0.94861 0.91274 1.19884 1.00676 0.94806 0.94273 1.21144 0.98926 0.94640 0.98605 1.21175 0.99324 1.00129 0.91506 1.19850 1.00612 0.94582 0.94439 1.21386 0.88087 0.95648 0.91906 1.88007 1.34982 1.69664 1.39418 1.22303 0.98752 0.92720 0.84712 1.22300 1.01469 0.96521 1.02898 1.21884 0.96345 1.02682 0.99723 1.21256 0.97549 0.94520 0.98437 1.21200 0.99553 1.00365 0.91444 0.96289 0.92002 0.94586 0.93194 0.91791 0.94709 0.88423 0.92389 0.76642 0.92562 0.94723 0.86638 0.84685 0.91504 0.90705 0.90722 0.89986 0.92521 0.92892 0.92269 0.89335 0.92884 0.83639 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.35 9.65 71.98 0.69 -5.66 16 2 C 0.14 5.90 6.44 86.38 0.56 6.45 16 3 N -0.60 -29.97 2.07 -706.34 -1.46 -31.43 16 4 C -0.25 -13.93 9.70 84.03 0.81 -13.12 16 5 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 6 C -0.04 -2.42 5.41 84.86 0.46 -1.96 16 7 N -0.92 -52.03 8.21 21.65 0.18 -51.85 16 8 Si 0.96 46.96 29.56 68.60 2.03 48.99 16 9 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 10 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.17 7.70 5.47 85.63 0.47 8.17 16 13 C 0.53 25.29 5.79 87.66 0.51 25.80 16 14 O -0.58 -33.10 13.88 -3.03 -0.04 -33.14 16 15 N -0.73 -28.02 5.55 -466.80 -2.59 -30.61 16 16 C 0.18 6.27 5.80 85.63 0.50 6.77 16 17 C -0.10 -2.73 5.25 -19.87 -0.10 -2.83 16 18 C -0.11 -3.14 9.70 22.27 0.22 -2.93 16 19 C -0.10 -2.39 9.70 22.27 0.22 -2.17 16 20 C -0.09 -1.96 5.51 -19.87 -0.11 -2.07 16 21 C 0.11 1.70 5.87 71.24 0.42 2.12 16 22 O -0.40 -7.61 9.97 -148.98 -1.49 -9.10 16 23 C 0.07 0.94 3.34 30.59 0.10 1.04 16 24 C -0.17 -2.01 9.53 71.98 0.69 -1.32 16 25 C -0.15 -1.70 9.56 71.98 0.69 -1.01 16 26 C -0.10 -2.03 9.70 22.27 0.22 -1.82 16 27 C -0.11 -2.55 9.70 22.27 0.22 -2.33 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.68 6.38 -2.39 -0.02 1.66 16 31 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 32 H 0.06 2.31 7.84 -2.38 -0.02 2.29 16 33 H 0.24 13.89 8.31 -92.70 -0.77 13.12 16 34 H 0.10 4.95 6.24 -2.39 -0.01 4.94 16 35 H 0.06 2.27 7.86 -2.39 -0.02 2.25 16 36 H 0.40 13.27 8.46 -92.71 -0.78 12.49 16 37 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 38 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.07 0.92 7.81 -2.38 -0.02 0.90 16 42 H 0.07 0.92 8.03 -2.39 -0.02 0.90 16 43 H 0.07 0.73 7.79 -2.38 -0.02 0.71 16 44 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.06 0.65 7.87 -2.38 -0.02 0.63 16 46 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 50 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 51 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -70.77 414.59 3.28 -67.49 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.11 Total: 26.52 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.54 Total: 13.13 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -3.87 Total: -113.89 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.53 Total: -42.24 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -70.77 3.28 -67.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121059453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.626 kcal (2) G-P(sol) polarization free energy of solvation -70.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds