Wall clock time and date at job start Tue Mar 31 2020 19:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47136 * 2 1 4 4 C 1.35912 * 117.00008 * 180.02562 * 3 2 1 5 5 C 1.38853 * 119.98321 * 0.02562 * 4 3 2 6 6 C 1.38251 * 120.23759 * 179.97438 * 5 4 3 7 7 C 1.38008 * 120.20679 * 359.74399 * 6 5 4 8 8 C 1.39569 * 119.96362 * 0.51538 * 7 6 5 9 9 C 1.47859 * 120.11541 * 179.76699 * 8 7 6 10 10 O 1.21553 * 119.99805 * 153.39609 * 9 8 7 11 11 N 1.34779 * 120.00084 * 333.38661 * 9 8 7 12 12 C 1.46503 * 119.99445 * 19.54579 * 11 9 8 13 13 C 1.50698 * 109.47207 * 295.49098 * 12 11 9 14 14 H 1.08006 * 119.99820 * 5.40446 * 13 12 11 15 15 C 1.37877 * 120.00124 * 185.40881 * 13 12 11 16 16 N 1.31520 * 119.99961 * 184.95939 * 15 13 12 17 17 Si 1.86802 * 119.99967 * 4.95609 * 15 13 12 18 18 H 1.48499 * 109.47217 * 84.78054 * 17 15 13 19 19 H 1.48505 * 109.47031 * 204.78255 * 17 15 13 20 20 H 1.48501 * 109.47020 * 324.78060 * 17 15 13 21 21 C 1.46494 * 120.00092 * 199.54172 * 11 9 8 22 22 C 1.53007 * 109.46864 * 273.94252 * 21 11 9 23 23 C 1.53002 * 109.46969 * 180.02562 * 22 21 11 24 24 N 1.46897 * 109.47127 * 179.97438 * 23 22 21 25 25 C 1.46900 * 110.99772 * 169.99950 * 24 23 22 26 26 C 1.46900 * 111.00203 * 293.95468 * 24 23 22 27 27 C 1.38455 * 119.98587 * 180.02562 * 4 3 2 28 28 H 1.08994 * 109.47360 * 59.99543 * 1 2 3 29 29 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46916 * 299.99953 * 1 2 3 31 31 H 1.09003 * 109.46916 * 240.00047 * 2 1 3 32 32 H 1.08994 * 109.47360 * 120.00457 * 2 1 3 33 33 H 1.08002 * 119.88289 * 359.96168 * 5 4 3 34 34 H 1.08001 * 119.89224 * 180.02562 * 6 5 4 35 35 H 1.07994 * 120.01821 * 180.24918 * 7 6 5 36 36 H 1.09004 * 109.46518 * 175.49633 * 12 11 9 37 37 H 1.08995 * 109.48001 * 55.49675 * 12 11 9 38 38 H 0.96996 * 119.99439 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.47244 * 33.94407 * 21 11 9 40 40 H 1.09001 * 109.47183 * 153.94651 * 21 11 9 41 41 H 1.08996 * 109.46855 * 299.99845 * 22 21 11 42 42 H 1.09001 * 109.46895 * 60.00223 * 22 21 11 43 43 H 1.08996 * 109.47190 * 300.00187 * 23 22 21 44 44 H 1.09009 * 109.46974 * 60.00070 * 23 22 21 45 45 H 1.09000 * 109.47551 * 60.00461 * 25 24 23 46 46 H 1.09008 * 109.47028 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47543 * 299.99970 * 25 24 23 48 48 H 1.09003 * 109.46752 * 60.00080 * 26 24 23 49 49 H 1.08999 * 109.47158 * 179.97438 * 26 24 23 50 50 H 1.08999 * 109.47178 * 300.00189 * 26 24 23 51 51 H 1.08000 * 120.10081 * 0.03205 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1992 0.4239 -0.0016 6 6 5.5706 0.5989 -0.0027 7 6 6.1084 1.8699 -0.0081 8 6 5.2664 2.9831 -0.0015 9 6 5.8390 4.3463 -0.0021 10 8 5.2040 5.2720 -0.4684 11 7 7.0648 4.5626 0.5147 12 6 7.9975 3.4450 0.6801 13 6 7.4399 2.4698 1.6847 14 1 6.4488 2.6173 2.0878 15 6 8.1951 1.3895 2.0894 16 7 7.6738 0.4859 2.8903 17 14 9.9585 1.2093 1.4999 18 1 10.8582 1.9939 2.3831 19 1 10.3501 -0.2226 1.5406 20 1 10.0689 1.7133 0.1074 21 6 7.4645 5.9151 0.9109 22 6 8.0313 6.6553 -0.3024 23 6 8.4494 8.0677 0.1115 24 7 8.9941 8.7782 -1.0532 25 6 9.1857 10.2043 -0.7575 26 6 10.2478 8.1615 -1.5071 27 6 3.8826 2.8049 0.0000 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7841 -0.5732 -0.0014 34 1 6.2231 -0.2617 -0.0039 35 1 7.1800 2.0031 -0.0130 36 1 8.9572 3.8221 1.0338 37 1 8.1353 2.9418 -0.2769 38 1 8.2052 -0.2739 3.1752 39 1 6.5969 6.4534 1.2922 40 1 8.2260 5.8559 1.6886 41 1 8.8990 6.1170 -0.6836 42 1 7.2699 6.7146 -1.0801 43 1 7.5820 8.6063 0.4930 44 1 9.2110 8.0080 0.8891 45 1 9.8813 10.3127 0.0746 46 1 9.5894 10.7066 -1.6367 47 1 8.2283 10.6521 -0.4914 48 1 10.0623 7.1242 -1.7858 49 1 10.6291 8.7067 -2.3705 50 1 10.9818 8.1958 -0.7020 51 1 3.2260 3.6623 0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130790301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:16 Heat of formation + Delta-G solvation = -18.594129 kcal Electronic energy + Delta-G solvation = -29593.252482 eV Core-core repulsion = 25687.251451 eV Total energy + Delta-G solvation = -3906.001031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60750 -40.39051 -38.68248 -38.08511 -37.09388 -34.97025 -33.39064 -32.71771 -31.64164 -30.70965 -29.43894 -28.47304 -27.33409 -25.28732 -24.55380 -24.01675 -23.08152 -22.62348 -21.76405 -20.50209 -19.18494 -18.92777 -17.62534 -17.18748 -17.04010 -16.92718 -16.56149 -16.47747 -16.19392 -15.91997 -15.67860 -15.27646 -15.00083 -14.83806 -14.63644 -14.42882 -14.25982 -14.10805 -13.83907 -13.40686 -13.28088 -13.24480 -13.18369 -12.90651 -12.76772 -12.65683 -12.59546 -12.56106 -12.40355 -12.29787 -12.05371 -11.81766 -11.76575 -11.55793 -11.42227 -11.26408 -10.71604 -10.66514 -9.82372 -9.39477 -9.28325 -8.87839 -8.30833 -6.14319 0.13568 0.80117 1.44170 1.46570 1.52659 1.85856 2.16403 2.32731 2.50837 2.92330 3.06741 3.28158 3.74361 3.96457 4.01588 4.09305 4.10985 4.17767 4.24135 4.28109 4.38771 4.41182 4.47133 4.49450 4.56263 4.57237 4.61026 4.65691 4.69463 4.73795 4.77090 4.80663 4.86490 4.96444 4.97077 5.01251 5.02900 5.16472 5.18203 5.22950 5.28526 5.33404 5.49023 5.63005 5.76433 5.83883 6.00338 6.08341 6.13604 6.18325 6.50670 6.64713 6.68855 7.16340 7.29907 8.80658 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.003648 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.505111 B = 7673.303393 C =10011.895925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.338 6.338 4 C 0.065 3.935 5 C -0.165 4.165 6 C -0.124 4.124 7 C -0.052 4.052 8 C -0.155 4.155 9 C 0.568 3.432 10 O -0.581 6.581 11 N -0.600 5.600 12 C 0.200 3.800 13 C -0.515 4.515 14 H 0.048 0.952 15 C 0.036 3.964 16 N -0.901 5.901 17 Si 0.923 3.077 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.238 1.238 21 C 0.123 3.877 22 C -0.118 4.118 23 C 0.065 3.935 24 N -0.568 5.568 25 C 0.026 3.974 26 C 0.022 3.978 27 C -0.107 4.107 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.181 0.819 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.272 0.728 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.031 0.969 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.031 0.969 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 4.556 -5.994 7.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.253 6.253 4 C 0.021 3.979 5 C -0.184 4.184 6 C -0.143 4.143 7 C -0.070 4.070 8 C -0.159 4.159 9 C 0.360 3.640 10 O -0.464 6.464 11 N -0.330 5.330 12 C 0.079 3.921 13 C -0.551 4.551 14 H 0.066 0.934 15 C -0.168 4.168 16 N -0.536 5.536 17 Si 0.746 3.254 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.161 1.161 21 C 0.000 4.000 22 C -0.157 4.157 23 C -0.063 4.063 24 N -0.293 5.293 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.126 4.126 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.197 0.803 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.096 0.904 50 H 0.050 0.950 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.662 4.986 -6.477 8.201 hybrid contribution 1.142 -0.573 1.142 1.714 sum 1.805 4.413 -5.336 7.156 Atomic orbital electron populations 1.21784 0.91091 1.04197 1.03081 1.23007 0.97093 0.81178 1.01744 1.85983 1.18488 1.30914 1.89952 1.18500 0.82724 0.93473 1.03224 1.21480 0.94307 0.98036 1.04568 1.20833 0.94234 0.97439 1.01751 1.22801 1.03044 0.91144 0.89994 1.19458 0.93136 0.93504 1.09772 1.18380 0.80937 0.88158 0.76560 1.90633 1.62449 1.46208 1.47090 1.47706 1.13758 1.09358 1.62148 1.20181 0.90129 0.85337 0.96492 1.21280 1.02470 1.08301 1.23088 0.93372 1.25544 1.01700 0.94703 0.94842 1.70018 1.38478 1.11699 1.33452 0.86090 0.80220 0.78087 0.81045 1.19000 1.20997 1.16090 1.21484 1.00138 0.81333 0.97001 1.21823 1.00629 0.95235 0.98000 1.21974 0.99435 0.93668 0.91270 1.61928 1.28790 1.03798 1.34735 1.22409 1.01498 0.87486 1.00840 1.22451 0.89547 1.00385 1.00246 1.20181 0.93744 0.95144 1.03576 0.91665 0.87849 0.92175 0.91250 0.92233 0.83964 0.85822 0.80264 0.92168 0.93579 0.91846 0.91990 0.88840 0.91506 0.93002 0.90763 0.93587 0.95051 0.90397 0.91300 0.91837 0.90408 0.95008 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 10.28 71.98 0.74 -2.07 16 2 C 0.04 1.15 5.46 71.98 0.39 1.55 16 3 O -0.34 -12.18 10.13 -92.56 -0.94 -13.12 16 4 C 0.07 2.64 6.68 22.47 0.15 2.79 16 5 C -0.17 -6.27 9.03 22.42 0.20 -6.06 16 6 C -0.12 -5.09 10.03 22.22 0.22 -4.87 16 7 C -0.05 -2.28 5.91 22.54 0.13 -2.14 16 8 C -0.16 -7.10 4.87 -20.10 -0.10 -7.20 16 9 C 0.57 25.92 7.24 86.79 0.63 26.55 16 10 O -0.58 -28.43 16.08 -3.88 -0.06 -28.50 16 11 N -0.60 -24.25 2.61 -831.00 -2.17 -26.42 16 12 C 0.20 8.01 4.02 85.63 0.34 8.35 16 13 C -0.51 -24.45 5.54 25.60 0.14 -24.31 16 14 H 0.05 2.73 6.70 -2.91 -0.02 2.72 16 15 C 0.04 1.70 5.13 84.65 0.43 2.14 16 16 N -0.90 -47.14 13.96 21.45 0.30 -46.84 16 17 Si 0.92 35.28 27.27 68.60 1.87 37.15 16 18 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.24 -8.15 6.89 99.48 0.69 -7.46 16 21 C 0.12 4.12 5.26 86.38 0.45 4.57 16 22 C -0.12 -3.50 5.40 30.60 0.17 -3.34 16 23 C 0.06 1.58 4.96 86.30 0.43 2.01 16 24 N -0.57 -13.18 5.02 -948.83 -4.76 -17.94 16 25 C 0.03 0.46 9.57 127.69 1.22 1.68 16 26 C 0.02 0.43 9.32 127.69 1.19 1.62 16 27 C -0.11 -4.77 9.53 22.63 0.22 -4.56 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.60 7.66 -2.39 -0.02 1.58 16 32 H 0.06 1.51 7.66 -2.39 -0.02 1.50 16 33 H 0.14 4.42 6.28 -2.91 -0.02 4.41 16 34 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 35 H 0.18 7.81 2.45 -5.58 -0.01 7.80 16 36 H 0.06 2.17 6.75 -2.39 -0.02 2.16 16 37 H 0.05 1.81 5.96 -2.39 -0.01 1.79 16 38 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 39 H 0.06 2.17 7.87 -2.39 -0.02 2.15 16 40 H 0.09 2.75 7.88 -2.39 -0.02 2.73 16 41 H 0.07 1.90 6.55 -2.39 -0.02 1.89 16 42 H 0.05 1.86 7.64 -2.39 -0.02 1.84 16 43 H 0.07 1.81 8.06 -2.39 -0.02 1.79 16 44 H 0.05 1.00 8.12 -2.38 -0.02 0.99 16 45 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 1.19 8.12 -2.38 -0.02 1.17 16 47 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 48 H 0.06 1.38 6.47 -2.39 -0.02 1.36 16 49 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 50 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.11 5.13 7.87 -2.91 -0.02 5.11 16 Total: -1.00 -62.40 399.77 2.09 -60.31 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: 0.88 Total: 38.64 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.97 Total: -3.29 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -6.63 Total: -91.21 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.00 Total: -41.61 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 1.87 Total: 37.15 kcal Total: -62.40 2.09 -60.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130790301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.719 kcal (2) G-P(sol) polarization free energy of solvation -62.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds