Wall clock time and date at job start Tue Mar 31 2020 19:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47272 * 2 1 4 4 C 1.46897 * 110.99920 * 73.22161 * 3 2 1 5 5 C 1.53002 * 109.46952 * 200.22556 * 4 3 2 6 6 O 1.42901 * 109.47140 * 64.86106 * 5 4 3 7 7 C 1.46901 * 110.99965 * 197.17399 * 3 2 1 8 8 H 1.09003 * 109.47187 * 186.04718 * 7 3 2 9 9 C 1.53004 * 109.47183 * 306.04422 * 7 3 2 10 10 C 1.50697 * 109.47460 * 66.04575 * 7 3 2 11 11 O 1.21282 * 119.99715 * 341.66344 * 10 7 3 12 12 N 1.34770 * 120.00109 * 161.66330 * 10 7 3 13 13 C 1.46497 * 120.00341 * 3.25841 * 12 10 7 14 14 C 1.50693 * 109.47544 * 272.02657 * 13 12 10 15 15 H 1.08000 * 119.99803 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00247 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00114 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47225 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.46953 * 119.99751 * 18 16 14 21 21 H 1.48495 * 109.47421 * 239.99946 * 18 16 14 22 22 C 1.39931 * 119.99899 * 183.26435 * 12 10 7 23 23 C 1.38869 * 120.07048 * 172.77314 * 22 12 10 24 24 C 1.38110 * 119.93233 * 180.02562 * 23 22 12 25 25 C 1.38289 * 120.06748 * 0.26180 * 24 23 22 26 26 C 1.50701 * 119.92890 * 179.71881 * 25 24 23 27 27 C 1.38285 * 120.13751 * 359.48690 * 25 24 23 28 28 C 1.38114 * 120.07281 * 0.50880 * 27 25 24 29 29 H 1.08999 * 109.47026 * 184.46142 * 1 2 3 30 30 H 1.09003 * 109.46932 * 304.46447 * 1 2 3 31 31 H 1.09004 * 109.46971 * 64.45886 * 1 2 3 32 32 H 1.09002 * 109.47172 * 239.99469 * 2 1 3 33 33 H 1.09004 * 109.46826 * 120.00323 * 2 1 3 34 34 H 1.09001 * 109.47138 * 320.22653 * 4 3 2 35 35 H 1.08996 * 109.47556 * 80.22653 * 4 3 2 36 36 H 1.09007 * 109.47125 * 184.85809 * 5 4 3 37 37 H 1.08999 * 109.47446 * 304.85895 * 5 4 3 38 38 H 0.96699 * 114.00148 * 184.99073 * 6 5 4 39 39 H 1.09001 * 109.46791 * 64.01092 * 9 7 3 40 40 H 1.08993 * 109.47262 * 184.01107 * 9 7 3 41 41 H 1.09004 * 109.47486 * 304.01450 * 9 7 3 42 42 H 1.09004 * 109.46746 * 32.02840 * 13 12 10 43 43 H 1.09004 * 109.47345 * 152.01824 * 13 12 10 44 44 H 0.96997 * 120.00229 * 180.02562 * 17 16 14 45 45 H 1.08002 * 120.03635 * 0.02562 * 23 22 12 46 46 H 1.07998 * 119.97087 * 179.97438 * 24 23 22 47 47 H 1.09005 * 109.46819 * 90.00170 * 26 25 24 48 48 H 1.09003 * 109.46920 * 209.99593 * 26 25 24 49 49 H 1.08997 * 109.47296 * 330.00157 * 26 25 24 50 50 H 1.08005 * 119.96033 * 180.23569 * 27 25 24 51 51 H 1.07994 * 120.03466 * 179.77019 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8219 2.0132 1.3130 5 6 1.8564 3.5352 1.1605 6 8 0.7480 3.9594 0.3645 7 6 3.4305 1.4445 -0.4050 8 1 3.7978 2.4647 -0.2935 9 6 4.2549 0.5064 0.4790 10 6 3.5583 1.0191 -1.8450 11 8 2.6647 0.3921 -2.3736 12 7 4.6654 1.3354 -2.5454 13 6 5.7748 2.0301 -1.8877 14 6 5.5527 3.5185 -1.9662 15 1 4.6733 3.9081 -2.4574 16 6 6.4722 4.3830 -1.4110 17 7 7.5428 3.9087 -0.8124 18 14 6.1972 6.2281 -1.5090 19 1 4.9275 6.5017 -2.2289 20 1 6.1199 6.7906 -0.1368 21 1 7.3257 6.8586 -2.2397 22 6 4.7551 1.0003 -3.9010 23 6 5.8250 1.4547 -4.6608 24 6 5.9105 1.1227 -5.9986 25 6 4.9292 0.3431 -6.5831 26 6 5.0223 -0.0120 -8.0447 27 6 3.8652 -0.1153 -5.8280 28 6 3.7740 0.2132 -4.4896 29 1 -0.3633 -1.0245 0.0799 30 1 -0.3633 0.5816 0.8473 31 1 -0.3633 0.4431 -0.9273 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.8567 1.7105 1.7190 35 1 2.6158 1.6979 1.9900 36 1 1.7962 4.0005 2.1444 37 1 2.7865 3.8308 0.6751 38 1 0.7480 4.9050 0.1622 39 1 3.9350 -0.5225 0.3142 40 1 5.3107 0.6035 0.2264 41 1 4.1061 0.7697 1.5262 42 1 5.8259 1.7250 -0.8424 43 1 6.7099 1.7754 -2.3865 44 1 8.1895 4.5168 -0.4215 45 1 6.5896 2.0671 -4.2059 46 1 6.7421 1.4761 -6.5902 47 1 5.5750 -0.9448 -8.1575 48 1 4.0192 -0.1324 -8.4539 49 1 5.5400 0.7840 -8.5798 50 1 3.1024 -0.7271 -6.2865 51 1 2.9409 -0.1420 -3.9014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155751576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:10 Heat of formation + Delta-G solvation = -32.829971 kcal Electronic energy + Delta-G solvation = -30871.301496 eV Core-core repulsion = 26964.683153 eV Total energy + Delta-G solvation = -3906.618343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49422 -38.69882 -37.37759 -35.90037 -35.38994 -32.89744 -32.13953 -30.96567 -30.32099 -30.15402 -27.62878 -27.12118 -26.12925 -24.15004 -23.33026 -22.50418 -21.77259 -21.27219 -19.91236 -18.59705 -17.22022 -16.94289 -16.84442 -16.22658 -15.53678 -15.18730 -14.82345 -14.71342 -14.62862 -14.49118 -13.88818 -13.57918 -13.48421 -13.36382 -13.17135 -13.04476 -12.79862 -12.70196 -12.30232 -12.20881 -12.09266 -11.87074 -11.69232 -11.63339 -11.50556 -11.35498 -11.24382 -11.06767 -10.99997 -10.71550 -10.56947 -10.42981 -10.37846 -10.23962 -9.99585 -9.63928 -9.05636 -8.72028 -8.45669 -8.30250 -7.85875 -7.07762 -6.31025 -4.39434 1.87216 2.05112 3.12786 3.19061 3.23317 3.29933 3.57263 4.19677 4.28773 4.48479 4.52840 4.96790 5.03798 5.23128 5.32734 5.34452 5.37888 5.39628 5.53754 5.56836 5.62503 5.63072 5.67906 5.71876 5.81003 5.82693 5.83603 5.94995 6.01336 6.02202 6.12731 6.15841 6.19060 6.23744 6.33109 6.35326 6.50570 6.57587 6.59294 6.80440 6.93755 7.01420 7.07863 7.20867 7.32992 7.38023 7.44898 7.62972 7.85875 7.88398 7.93993 8.14350 8.66820 8.83930 9.28543 10.74698 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007896 B = 0.005574 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3545.383207 B = 5021.724124 C = 7492.211862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.037 3.963 3 N -0.506 5.506 4 C 0.051 3.949 5 C 0.078 3.922 6 O -0.559 6.559 7 C 0.064 3.936 8 H 0.127 0.873 9 C -0.184 4.184 10 C 0.533 3.467 11 O -0.528 6.528 12 N -0.534 5.534 13 C 0.220 3.780 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.069 3.931 17 N -0.888 5.888 18 Si 0.894 3.106 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.167 3.833 23 C -0.143 4.143 24 C -0.104 4.104 25 C -0.133 4.133 26 C -0.104 4.104 27 C -0.107 4.107 28 C -0.176 4.176 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.371 0.629 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.266 0.734 45 H 0.137 0.863 46 H 0.116 0.884 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.113 0.887 51 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 -5.345 0.555 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 N -0.230 5.230 4 C -0.077 4.077 5 C 0.000 4.000 6 O -0.363 6.363 7 C -0.047 4.047 8 H 0.144 0.856 9 C -0.243 4.243 10 C 0.323 3.677 11 O -0.408 6.408 12 N -0.253 5.253 13 C 0.102 3.898 14 C -0.577 4.577 15 H 0.083 0.917 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.722 3.278 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.207 1.207 22 C 0.071 3.929 23 C -0.163 4.163 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.160 4.160 27 C -0.126 4.126 28 C -0.195 4.195 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.217 0.783 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.155 0.845 46 H 0.134 0.866 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.131 0.869 51 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.843 -5.960 0.190 9.076 hybrid contribution 0.923 1.499 0.615 1.865 sum -5.919 -4.461 0.805 7.456 Atomic orbital electron populations 1.21683 0.95418 1.00130 1.02273 1.22424 0.95890 0.88942 1.01753 1.61853 1.15931 1.18096 1.27116 1.22227 1.01514 0.93574 0.90371 1.22219 0.89876 0.94503 0.93449 1.86551 1.46980 1.28874 1.73888 1.21686 0.88719 1.02912 0.91398 0.85578 1.22474 1.02185 0.99551 1.00082 1.20408 0.80558 0.78269 0.88468 1.90158 1.40295 1.40682 1.69671 1.45961 1.18399 1.53321 1.07583 1.19867 0.83961 0.92141 0.93866 1.21447 1.08207 0.90304 1.37701 0.91744 1.24904 0.94685 0.99259 0.94650 1.69918 1.10793 1.35411 1.36509 0.86477 0.78657 0.84738 0.77962 1.19463 1.20758 1.20683 1.18075 0.95383 0.95588 0.83856 1.21084 0.99226 1.02126 0.93896 1.20714 0.98394 0.98772 0.94371 1.19770 0.96522 1.01230 0.95862 1.20657 1.01674 1.01046 0.92659 1.20896 0.97490 1.00171 0.94025 1.22738 1.01383 0.99594 0.95821 0.93260 0.93413 0.91919 0.87771 0.96022 0.90097 0.93009 0.93990 0.92757 0.78297 0.92383 0.90130 0.91651 0.93008 0.93603 0.92393 0.84525 0.86642 0.92144 0.92311 0.92258 0.86911 0.80486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 10.05 37.16 0.37 -1.55 16 2 C 0.04 0.57 4.08 -3.83 -0.02 0.56 16 3 N -0.51 -8.45 4.15 -228.04 -0.95 -9.39 16 4 C 0.05 0.73 5.10 -3.82 -0.02 0.71 16 5 C 0.08 1.11 7.24 37.16 0.27 1.38 16 6 O -0.56 -8.48 13.60 -35.23 -0.48 -8.96 16 7 C 0.06 1.15 1.82 -68.86 -0.13 1.03 16 8 H 0.13 2.52 5.24 -51.93 -0.27 2.24 16 9 C -0.18 -2.89 8.21 37.16 0.31 -2.58 16 10 C 0.53 10.88 6.72 -10.99 -0.07 10.81 16 11 O -0.53 -11.12 10.19 5.56 0.06 -11.06 16 12 N -0.53 -11.38 2.69 -114.74 -0.31 -11.69 16 13 C 0.22 4.99 4.16 -5.20 -0.02 4.97 16 14 C -0.54 -13.31 8.54 -34.44 -0.29 -13.60 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -23.02 13.29 55.43 0.74 -22.28 16 18 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 C 0.17 3.50 6.49 -83.69 -0.54 2.95 16 23 C -0.14 -2.84 9.15 -39.39 -0.36 -3.20 16 24 C -0.10 -1.78 9.69 -39.61 -0.38 -2.17 16 25 C -0.13 -2.14 5.88 -104.59 -0.62 -2.75 16 26 C -0.10 -1.27 10.01 36.01 0.36 -0.91 16 27 C -0.11 -1.83 9.69 -39.61 -0.38 -2.21 16 28 C -0.18 -3.46 9.04 -39.39 -0.36 -3.81 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.63 6.51 -51.93 -0.34 0.30 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.82 5.22 -51.93 -0.27 1.55 16 33 H 0.02 0.30 7.28 -51.93 -0.38 -0.08 16 34 H 0.08 1.09 6.27 -51.93 -0.33 0.76 16 35 H 0.05 0.67 6.12 -51.93 -0.32 0.35 16 36 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 37 H 0.05 0.86 6.70 -51.93 -0.35 0.51 16 38 H 0.37 4.16 9.12 45.56 0.42 4.58 16 39 H 0.06 0.87 6.96 -51.93 -0.36 0.51 16 40 H 0.08 1.35 5.80 -51.93 -0.30 1.05 16 41 H 0.06 0.90 6.33 -51.93 -0.33 0.57 16 42 H 0.05 1.17 4.56 -51.93 -0.24 0.93 16 43 H 0.05 1.10 6.42 -51.93 -0.33 0.77 16 44 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 45 H 0.14 2.87 6.30 -52.49 -0.33 2.54 16 46 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 49 H 0.06 0.66 8.08 -51.93 -0.42 0.25 16 50 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 51 H 0.18 3.64 4.55 -56.13 -0.26 3.39 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -28.25 390.45 -8.96 -37.21 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -6.90 Total: 14.38 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.98 Total: -8.78 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.52 Total: -43.36 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.42 Total: -20.03 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.25 -8.96 -37.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155751576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.383 kcal (2) G-P(sol) polarization free energy of solvation -28.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds