Wall clock time and date at job start Tue Mar 31 2020 19:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47272 * 2 1 4 4 C 1.46897 * 110.99920 * 73.22161 * 3 2 1 5 5 C 1.53002 * 109.46952 * 200.22556 * 4 3 2 6 6 O 1.42901 * 109.47140 * 64.86106 * 5 4 3 7 7 C 1.46901 * 110.99965 * 197.17399 * 3 2 1 8 8 H 1.09003 * 109.47187 * 186.04718 * 7 3 2 9 9 C 1.53004 * 109.47183 * 306.04422 * 7 3 2 10 10 C 1.50697 * 109.47460 * 66.04575 * 7 3 2 11 11 O 1.21282 * 119.99715 * 341.66344 * 10 7 3 12 12 N 1.34770 * 120.00109 * 161.66330 * 10 7 3 13 13 C 1.46497 * 120.00341 * 3.25841 * 12 10 7 14 14 C 1.50693 * 109.47544 * 272.02657 * 13 12 10 15 15 H 1.08000 * 119.99803 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00247 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00114 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47225 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.46953 * 119.99751 * 18 16 14 21 21 H 1.48495 * 109.47421 * 239.99946 * 18 16 14 22 22 C 1.39931 * 119.99899 * 183.26435 * 12 10 7 23 23 C 1.38869 * 120.07048 * 172.77314 * 22 12 10 24 24 C 1.38110 * 119.93233 * 180.02562 * 23 22 12 25 25 C 1.38289 * 120.06748 * 0.26180 * 24 23 22 26 26 C 1.50701 * 119.92890 * 179.71881 * 25 24 23 27 27 C 1.38285 * 120.13751 * 359.48690 * 25 24 23 28 28 C 1.38114 * 120.07281 * 0.50880 * 27 25 24 29 29 H 1.08999 * 109.47026 * 184.46142 * 1 2 3 30 30 H 1.09003 * 109.46932 * 304.46447 * 1 2 3 31 31 H 1.09004 * 109.46971 * 64.45886 * 1 2 3 32 32 H 1.09002 * 109.47172 * 239.99469 * 2 1 3 33 33 H 1.09004 * 109.46826 * 120.00323 * 2 1 3 34 34 H 1.09001 * 109.47138 * 320.22653 * 4 3 2 35 35 H 1.08996 * 109.47556 * 80.22653 * 4 3 2 36 36 H 1.09007 * 109.47125 * 184.85809 * 5 4 3 37 37 H 1.08999 * 109.47446 * 304.85895 * 5 4 3 38 38 H 0.96699 * 114.00148 * 184.99073 * 6 5 4 39 39 H 1.09001 * 109.46791 * 64.01092 * 9 7 3 40 40 H 1.08993 * 109.47262 * 184.01107 * 9 7 3 41 41 H 1.09004 * 109.47486 * 304.01450 * 9 7 3 42 42 H 1.09004 * 109.46746 * 32.02840 * 13 12 10 43 43 H 1.09004 * 109.47345 * 152.01824 * 13 12 10 44 44 H 0.96997 * 120.00229 * 180.02562 * 17 16 14 45 45 H 1.08002 * 120.03635 * 0.02562 * 23 22 12 46 46 H 1.07998 * 119.97087 * 179.97438 * 24 23 22 47 47 H 1.09005 * 109.46819 * 90.00170 * 26 25 24 48 48 H 1.09003 * 109.46920 * 209.99593 * 26 25 24 49 49 H 1.08997 * 109.47296 * 330.00157 * 26 25 24 50 50 H 1.08005 * 119.96033 * 180.23569 * 27 25 24 51 51 H 1.07994 * 120.03466 * 179.77019 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8219 2.0132 1.3130 5 6 1.8564 3.5352 1.1605 6 8 0.7480 3.9594 0.3645 7 6 3.4305 1.4445 -0.4050 8 1 3.7978 2.4647 -0.2935 9 6 4.2549 0.5064 0.4790 10 6 3.5583 1.0191 -1.8450 11 8 2.6647 0.3921 -2.3736 12 7 4.6654 1.3354 -2.5454 13 6 5.7748 2.0301 -1.8877 14 6 5.5527 3.5185 -1.9662 15 1 4.6733 3.9081 -2.4574 16 6 6.4722 4.3830 -1.4110 17 7 7.5428 3.9087 -0.8124 18 14 6.1972 6.2281 -1.5090 19 1 4.9275 6.5017 -2.2289 20 1 6.1199 6.7906 -0.1368 21 1 7.3257 6.8586 -2.2397 22 6 4.7551 1.0003 -3.9010 23 6 5.8250 1.4547 -4.6608 24 6 5.9105 1.1227 -5.9986 25 6 4.9292 0.3431 -6.5831 26 6 5.0223 -0.0120 -8.0447 27 6 3.8652 -0.1153 -5.8280 28 6 3.7740 0.2132 -4.4896 29 1 -0.3633 -1.0245 0.0799 30 1 -0.3633 0.5816 0.8473 31 1 -0.3633 0.4431 -0.9273 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.8567 1.7105 1.7190 35 1 2.6158 1.6979 1.9900 36 1 1.7962 4.0005 2.1444 37 1 2.7865 3.8308 0.6751 38 1 0.7480 4.9050 0.1622 39 1 3.9350 -0.5225 0.3142 40 1 5.3107 0.6035 0.2264 41 1 4.1061 0.7697 1.5262 42 1 5.8259 1.7250 -0.8424 43 1 6.7099 1.7754 -2.3865 44 1 8.1895 4.5168 -0.4215 45 1 6.5896 2.0671 -4.2059 46 1 6.7421 1.4761 -6.5902 47 1 5.5750 -0.9448 -8.1575 48 1 4.0192 -0.1324 -8.4539 49 1 5.5400 0.7840 -8.5798 50 1 3.1024 -0.7271 -6.2865 51 1 2.9409 -0.1420 -3.9014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155751576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:09 Heat of formation + Delta-G solvation = -50.618880 kcal Electronic energy + Delta-G solvation = -30872.072881 eV Core-core repulsion = 26964.683153 eV Total energy + Delta-G solvation = -3907.389728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.02360 -40.05965 -38.71595 -37.19205 -36.94863 -34.72835 -33.50792 -32.25289 -31.76278 -31.36730 -29.40423 -28.36217 -27.44283 -25.66829 -24.94420 -23.68831 -23.26777 -22.63072 -21.29079 -20.02238 -18.80385 -18.46948 -18.35238 -17.80112 -16.84876 -16.53294 -16.49275 -16.18363 -16.02772 -15.94860 -15.23844 -14.95264 -14.73924 -14.62111 -14.47489 -14.38835 -14.29966 -14.13295 -13.73456 -13.62410 -13.41894 -13.13759 -13.01353 -12.95721 -12.93322 -12.77764 -12.70943 -12.53999 -12.34086 -12.25982 -12.16850 -11.89110 -11.82853 -11.62546 -11.57203 -10.78226 -10.69245 -10.64738 -9.96796 -9.76182 -9.12685 -8.64207 -8.22377 -6.39505 0.41618 0.58839 1.35648 1.40569 1.50211 1.67540 2.04718 2.37196 2.96222 3.01998 3.05084 3.43458 3.54108 3.97652 4.06927 4.10281 4.12931 4.19384 4.25489 4.31051 4.44413 4.46532 4.49319 4.52027 4.55039 4.63173 4.63994 4.70040 4.77359 4.82298 4.87853 4.91733 4.94189 4.96519 5.01321 5.08468 5.20236 5.24356 5.24654 5.31359 5.41199 5.49924 5.58110 5.64506 5.79057 5.86356 5.95467 6.08575 6.24912 6.35633 6.48000 6.73770 6.96499 7.20864 7.32495 8.80090 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007896 B = 0.005574 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3545.383207 B = 5021.724124 C = 7492.211862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.038 3.962 3 N -0.523 5.523 4 C 0.049 3.951 5 C 0.077 3.923 6 O -0.579 6.579 7 C 0.073 3.927 8 H 0.104 0.896 9 C -0.175 4.175 10 C 0.523 3.477 11 O -0.539 6.539 12 N -0.540 5.540 13 C 0.238 3.762 14 C -0.541 4.541 15 H 0.043 0.957 16 C 0.033 3.967 17 N -0.912 5.912 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.270 1.270 21 H -0.279 1.279 22 C 0.134 3.866 23 C -0.161 4.161 24 C -0.104 4.104 25 C -0.124 4.124 26 C -0.101 4.101 27 C -0.107 4.107 28 C -0.190 4.190 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.030 0.970 38 H 0.386 0.614 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.115 0.885 46 H 0.141 0.859 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.141 0.859 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 -5.658 0.165 8.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 N -0.247 5.247 4 C -0.078 4.078 5 C -0.001 4.001 6 O -0.386 6.386 7 C -0.039 4.039 8 H 0.121 0.879 9 C -0.233 4.233 10 C 0.314 3.686 11 O -0.419 6.419 12 N -0.260 5.260 13 C 0.118 3.882 14 C -0.579 4.579 15 H 0.061 0.939 16 C -0.168 4.168 17 N -0.551 5.551 18 Si 0.775 3.225 19 H -0.201 1.201 20 H -0.195 1.195 21 H -0.204 1.204 22 C 0.038 3.962 23 C -0.182 4.182 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.158 4.158 27 C -0.125 4.125 28 C -0.210 4.210 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.234 0.766 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.133 0.867 46 H 0.159 0.841 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.159 0.841 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.544 -6.272 -0.205 9.812 hybrid contribution 1.110 1.555 0.629 2.012 sum -6.433 -4.716 0.424 7.988 Atomic orbital electron populations 1.21619 0.94229 1.01466 1.01377 1.22384 0.96783 0.88273 1.01447 1.61853 1.14818 1.19107 1.28939 1.22354 1.02691 0.93396 0.89390 1.22281 0.88538 0.94848 0.94438 1.86502 1.47262 1.30468 1.74329 1.21500 0.90205 1.01891 0.90293 0.87852 1.22391 1.00629 0.99459 1.00853 1.20931 0.80133 0.78073 0.89477 1.90158 1.40395 1.41164 1.70205 1.45945 1.18373 1.53556 1.08101 1.19522 0.83764 0.91255 0.93658 1.21436 1.07477 0.91520 1.37487 0.93851 1.25486 0.94389 1.02670 0.94287 1.69985 1.11353 1.36662 1.37089 0.85631 0.78048 0.80517 0.78306 1.20126 1.19499 1.20446 1.18394 0.96619 0.97181 0.83958 1.21061 0.98842 1.02946 0.95336 1.21046 0.99484 0.98403 0.93319 1.20237 0.95032 0.99243 0.97979 1.20730 1.03244 1.02308 0.89475 1.21242 0.98436 0.99859 0.92976 1.22712 1.00936 1.00154 0.97171 0.91101 0.92475 0.94239 0.90151 0.94091 0.88841 0.91407 0.91036 0.95148 0.76617 0.91626 0.91725 0.89332 0.92948 0.95525 0.92066 0.86665 0.84103 0.90372 0.90735 0.90874 0.84097 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 10.05 71.98 0.72 -2.74 16 2 C 0.04 1.15 4.08 86.30 0.35 1.50 16 3 N -0.52 -17.41 4.15 -875.38 -3.64 -21.04 16 4 C 0.05 1.33 5.10 86.30 0.44 1.77 16 5 C 0.08 2.13 7.24 71.98 0.52 2.65 16 6 O -0.58 -17.29 13.60 -148.98 -2.03 -19.32 16 7 C 0.07 2.69 1.82 44.17 0.08 2.77 16 8 H 0.10 4.32 5.24 -2.39 -0.01 4.30 16 9 C -0.17 -5.49 8.21 71.98 0.59 -4.90 16 10 C 0.52 22.36 6.72 87.66 0.59 22.95 16 11 O -0.54 -23.66 10.19 -3.03 -0.03 -23.69 16 12 N -0.54 -24.38 2.69 -635.33 -1.71 -26.08 16 13 C 0.24 11.39 4.16 85.63 0.36 11.74 16 14 C -0.54 -27.93 8.54 25.60 0.22 -27.71 16 15 H 0.04 2.39 7.81 -2.91 -0.02 2.36 16 16 C 0.03 1.69 5.46 84.66 0.46 2.15 16 17 N -0.91 -48.11 13.29 21.45 0.28 -47.83 16 18 Si 0.95 40.93 29.54 68.60 2.03 42.96 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.13 5.86 6.49 38.15 0.25 6.11 16 23 C -0.16 -6.67 9.15 22.39 0.20 -6.46 16 24 C -0.10 -3.50 9.69 22.25 0.22 -3.29 16 25 C -0.12 -3.74 5.88 -19.84 -0.12 -3.86 16 26 C -0.10 -2.10 10.01 71.24 0.71 -1.38 16 27 C -0.11 -3.52 9.69 22.25 0.22 -3.30 16 28 C -0.19 -7.65 9.04 22.39 0.20 -7.45 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.41 6.51 -2.39 -0.02 1.39 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 2.84 5.22 -2.39 -0.01 2.83 16 33 H 0.04 1.07 7.28 -2.38 -0.02 1.05 16 34 H 0.09 2.31 6.27 -2.39 -0.01 2.29 16 35 H 0.07 1.61 6.12 -2.39 -0.01 1.60 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.03 0.98 6.70 -2.39 -0.02 0.96 16 38 H 0.39 8.52 9.12 -74.06 -0.68 7.84 16 39 H 0.06 1.94 6.96 -2.39 -0.02 1.93 16 40 H 0.06 2.24 5.80 -2.39 -0.01 2.22 16 41 H 0.09 2.33 6.33 -2.38 -0.02 2.32 16 42 H 0.05 2.49 4.56 -2.38 -0.01 2.48 16 43 H 0.03 1.37 6.42 -2.38 -0.02 1.35 16 44 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 45 H 0.12 5.17 6.30 -2.91 -0.02 5.15 16 46 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 47 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 49 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 50 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 51 H 0.17 7.06 4.55 -60.58 -0.28 6.78 16 Total: -1.00 -62.81 390.45 0.95 -61.86 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: 0.02 Total: 42.61 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 6.02 Total: -9.46 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -5.06 Total: -94.96 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -2.06 Total: -43.01 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -62.81 0.95 -61.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155751576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.240 kcal (2) G-P(sol) polarization free energy of solvation -62.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds