Wall clock time and date at job start Tue Mar 31 2020 19:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.46686 * 2 1 4 4 C 1.35899 * 116.99396 * 180.02562 * 3 2 1 5 5 C 1.38739 * 120.05113 * 180.02562 * 4 3 2 6 6 C 1.38144 * 119.94188 * 180.02562 * 5 4 3 7 7 C 1.38267 * 120.05579 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94278 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.47182 * 90.00559 * 8 7 6 10 10 C 1.46499 * 119.99655 * 270.00082 * 9 8 7 11 11 C 1.34778 * 119.99967 * 89.99608 * 9 8 7 12 12 O 1.21280 * 120.00077 * 0.02562 * 11 9 8 13 13 C 1.50703 * 119.99707 * 180.02562 * 11 9 8 14 14 N 1.46899 * 109.46934 * 180.02562 * 13 11 9 15 15 C 1.46894 * 110.99940 * 66.04517 * 14 13 11 16 16 C 1.46895 * 110.99816 * 190.00383 * 14 13 11 17 17 H 1.09003 * 109.47358 * 299.99667 * 16 14 13 18 18 C 1.52993 * 109.47769 * 59.99822 * 16 14 13 19 19 C 1.50699 * 109.47132 * 180.02562 * 16 14 13 20 20 H 1.08005 * 119.99825 * 355.83164 * 19 16 14 21 21 C 1.37876 * 120.00380 * 175.83111 * 19 16 14 22 22 N 1.31518 * 119.99577 * 354.47787 * 21 19 16 23 23 Si 1.86801 * 120.00336 * 174.75752 * 21 19 16 24 24 H 1.48501 * 109.46995 * 264.76923 * 23 21 19 25 25 H 1.48500 * 109.46958 * 24.77150 * 23 21 19 26 26 H 1.48494 * 109.47149 * 144.77369 * 23 21 19 27 27 C 1.38265 * 120.11397 * 0.25643 * 7 6 5 28 28 C 1.38145 * 120.05236 * 359.45332 * 27 7 6 29 29 H 1.09001 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47292 * 300.00122 * 1 2 3 31 31 H 1.08996 * 109.47183 * 60.00187 * 1 2 3 32 32 H 1.08990 * 109.46889 * 239.99871 * 2 1 3 33 33 H 1.08998 * 109.47060 * 119.99279 * 2 1 3 34 34 H 1.07997 * 120.02642 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.97436 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47242 * 330.00326 * 8 7 6 37 37 H 1.09001 * 109.47231 * 209.99880 * 8 7 6 38 38 H 1.09002 * 109.47059 * 269.99586 * 10 9 8 39 39 H 1.08997 * 109.47461 * 29.99978 * 10 9 8 40 40 H 1.09003 * 109.46763 * 149.99713 * 10 9 8 41 41 H 1.09003 * 109.46741 * 60.00347 * 13 11 9 42 42 H 1.08998 * 109.47151 * 300.00096 * 13 11 9 43 43 H 1.09003 * 109.47263 * 183.95245 * 15 14 13 44 44 H 1.08998 * 109.47349 * 303.95278 * 15 14 13 45 45 H 1.08999 * 109.47109 * 63.95547 * 15 14 13 46 46 H 1.08997 * 109.47543 * 174.36325 * 18 16 14 47 47 H 1.09005 * 109.46822 * 294.36755 * 18 16 14 48 48 H 1.09001 * 109.47137 * 54.36054 * 18 16 14 49 49 H 0.97002 * 119.99859 * 180.27523 * 22 21 19 50 50 H 1.07997 * 119.97408 * 179.69857 * 27 7 6 51 51 H 1.07996 * 120.02931 * 180.25407 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 3.8850 2.8069 0.0000 6 6 5.2549 2.9853 -0.0011 7 6 6.0961 1.8880 -0.0032 8 6 7.5901 2.0855 -0.0050 9 7 8.0760 2.1480 1.3757 10 6 8.1527 3.4372 2.0675 11 6 8.4525 1.0197 2.0094 12 8 8.3893 -0.0474 1.4365 13 6 8.9518 1.0840 3.4298 14 7 9.2964 -0.2680 3.8894 15 6 10.4412 -0.8028 3.1404 16 6 9.5599 -0.2815 5.3345 17 1 10.3918 0.3863 5.5584 18 6 8.3123 0.1887 6.0850 19 6 9.9098 -1.6817 5.7682 20 1 9.8684 -2.4935 5.0571 21 6 10.2826 -1.9265 7.0729 22 7 10.4383 -0.9251 7.9111 23 14 10.5741 -3.6797 7.6478 24 1 9.3378 -4.2051 8.2809 25 1 10.9336 -4.5290 6.4838 26 1 11.6826 -3.6988 8.6357 27 6 5.5689 0.6098 -0.0096 28 6 4.1998 0.4261 -0.0025 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.2283 3.6643 0.0004 35 1 5.6692 3.9827 -0.0003 36 1 7.8330 3.0159 -0.5182 37 1 8.0662 1.2512 -0.5202 38 1 9.1318 3.8842 1.8954 39 1 7.3777 4.1014 1.6851 40 1 8.0056 3.2849 3.1367 41 1 8.1731 1.4985 4.0702 42 1 9.8363 1.7194 3.4756 43 1 10.6310 -1.8301 3.4514 44 1 10.2194 -0.7813 2.0735 45 1 11.3228 -0.1939 3.3406 46 1 8.4727 0.0839 7.1580 47 1 8.1178 1.2345 5.8470 48 1 7.4576 -0.4173 5.7845 49 1 10.7045 -1.0969 8.8279 50 1 6.2281 -0.2457 -0.0162 51 1 3.7884 -0.5725 -0.0034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161758639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:36 Heat of formation + Delta-G solvation = -32.570835 kcal Electronic energy + Delta-G solvation = -29113.971464 eV Core-core repulsion = 25207.364358 eV Total energy + Delta-G solvation = -3906.607106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.41573 -39.63952 -37.86629 -36.47073 -35.22070 -32.72578 -32.37139 -31.07793 -30.83634 -29.27398 -28.06197 -27.05657 -25.52426 -24.52610 -24.20874 -23.28632 -22.16468 -21.30014 -19.74274 -18.70561 -18.41419 -16.93691 -16.35253 -16.34409 -16.03845 -16.00145 -15.80571 -15.05459 -14.72209 -14.45514 -13.93298 -13.70418 -13.64264 -13.60444 -13.46406 -13.42131 -12.95349 -12.86604 -12.52047 -12.47796 -12.27979 -12.08983 -12.02631 -11.82469 -11.66408 -11.58160 -11.00993 -10.99343 -10.94195 -10.84966 -10.78780 -10.59534 -10.16462 -10.12707 -9.94048 -9.23822 -9.08203 -8.86083 -8.57447 -8.41488 -8.20408 -7.12342 -6.01476 -4.02854 1.22534 1.30279 2.97669 3.01580 3.13189 3.33136 3.39670 3.44353 3.77178 4.43818 4.57873 4.62051 4.70346 4.75892 4.80941 4.92321 4.94751 5.08557 5.13168 5.15993 5.25440 5.26079 5.32616 5.38938 5.46293 5.47642 5.61855 5.66045 5.68219 5.72440 5.84942 5.90909 5.97371 6.14597 6.30205 6.36734 6.50495 6.55261 6.61028 6.66322 6.74515 6.94675 6.99761 7.14503 7.25545 7.41523 7.52570 7.69681 7.85729 8.15632 8.30059 8.53186 8.64517 9.04914 9.61450 11.07495 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.002640 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.469419 B =10603.198946 C =11905.104231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.319 6.319 4 C 0.130 3.870 5 C -0.158 4.158 6 C -0.069 4.069 7 C -0.142 4.142 8 C 0.161 3.839 9 N -0.623 5.623 10 C 0.080 3.920 11 C 0.518 3.482 12 O -0.517 6.517 13 C 0.036 3.964 14 N -0.520 5.520 15 C 0.037 3.963 16 C 0.211 3.789 17 H 0.004 0.996 18 C -0.130 4.130 19 C -0.500 4.500 20 H 0.065 0.935 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.281 1.281 25 H -0.273 1.273 26 H -0.288 1.288 27 C -0.050 4.050 28 C -0.209 4.209 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.004 0.996 46 H 0.075 0.925 47 H 0.008 0.992 48 H 0.036 0.964 49 H 0.260 0.740 50 H 0.133 0.867 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.302 10.260 -17.242 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.233 6.233 4 C 0.084 3.916 5 C -0.177 4.177 6 C -0.088 4.088 7 C -0.144 4.144 8 C 0.039 3.961 9 N -0.359 5.359 10 C -0.064 4.064 11 C 0.307 3.693 12 O -0.391 6.391 13 C -0.096 4.096 14 N -0.246 5.246 15 C -0.112 4.112 16 C 0.105 3.895 17 H 0.022 0.978 18 C -0.188 4.188 19 C -0.539 4.539 20 H 0.083 0.917 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.207 1.207 25 H -0.198 1.198 26 H -0.214 1.214 27 C -0.069 4.069 28 C -0.228 4.228 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.023 0.977 46 H 0.094 0.906 47 H 0.027 0.973 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.151 0.849 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.814 9.527 -17.425 24.191 hybrid contribution 0.824 -0.456 0.749 1.204 sum -12.990 9.070 -16.675 23.001 Atomic orbital electron populations 1.21773 0.92756 1.02894 1.03422 1.22790 0.95811 0.81971 1.01634 1.86041 1.19217 1.29371 1.88682 1.19022 0.82124 0.94244 0.96186 1.20344 0.95137 0.94656 1.07569 1.20812 0.92080 0.98371 0.97497 1.20167 0.96239 0.93260 1.04693 1.20194 0.89451 1.03091 0.83405 1.48022 1.66207 1.07734 1.13896 1.21776 1.01457 0.84941 0.98213 1.21044 0.76541 0.82953 0.88798 1.90605 1.52854 1.28322 1.67311 1.22028 1.00711 0.94582 0.92259 1.61878 1.38881 1.16708 1.07083 1.22302 0.90171 1.00965 0.97723 1.19301 0.92915 0.97104 0.80139 0.97842 1.21804 0.98476 0.95455 1.03034 1.21133 1.44458 0.93200 0.95088 0.91717 1.24932 0.95397 0.97130 0.96783 1.69949 1.47858 1.30302 1.05307 0.86517 0.77700 0.84901 0.78521 1.20719 1.19814 1.21403 1.21062 0.94225 0.97437 0.94183 1.21275 0.94430 0.98016 1.09072 0.90334 0.91491 0.91630 0.92030 0.91817 0.85443 0.85626 0.90133 0.89226 0.92663 0.91395 0.90751 0.88234 0.93386 0.90703 0.92095 0.97727 0.90587 0.97278 0.94448 0.93034 0.84907 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.64 10.14 -19.42 -0.20 -3.84 16 4 C 0.13 1.57 6.69 -39.21 -0.26 1.30 16 5 C -0.16 -1.74 9.99 -39.43 -0.39 -2.13 16 6 C -0.07 -0.71 9.69 -39.61 -0.38 -1.09 16 7 C -0.14 -1.68 5.46 -104.60 -0.57 -2.25 16 8 C 0.16 1.80 5.53 -5.19 -0.03 1.78 16 9 N -0.62 -8.01 2.86 -182.95 -0.52 -8.54 16 10 C 0.08 0.76 10.24 59.85 0.61 1.37 16 11 C 0.52 8.85 7.36 -10.98 -0.08 8.77 16 12 O -0.52 -10.33 13.46 5.56 0.07 -10.26 16 13 C 0.04 0.66 3.81 -4.97 -0.02 0.64 16 14 N -0.52 -11.84 4.36 -237.74 -1.04 -12.87 16 15 C 0.04 0.80 8.88 60.06 0.53 1.33 16 16 C 0.21 5.39 1.94 -68.87 -0.13 5.26 16 17 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 18 C -0.13 -3.13 8.69 37.15 0.32 -2.80 16 19 C -0.50 -13.95 7.77 -34.44 -0.27 -14.22 16 20 H 0.06 1.84 6.57 -52.48 -0.34 1.49 16 21 C 0.06 1.64 5.22 -17.82 -0.09 1.54 16 22 N -0.89 -25.66 11.88 55.43 0.66 -25.00 16 23 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.05 -0.67 9.69 -39.61 -0.38 -1.05 16 28 C -0.21 -2.58 9.04 -39.43 -0.36 -2.93 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 33 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 37 H 0.09 1.12 7.36 -51.93 -0.38 0.73 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 40 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 41 H 0.10 1.77 5.21 -51.93 -0.27 1.50 16 42 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.07 1.73 6.31 -51.93 -0.33 1.40 16 44 H 0.06 1.27 5.82 -51.93 -0.30 0.97 16 45 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 46 H 0.08 2.00 6.52 -51.93 -0.34 1.66 16 47 H 0.01 0.18 6.50 -51.93 -0.34 -0.16 16 48 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.13 1.92 7.60 -52.49 -0.40 1.52 16 51 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -32.60 404.87 -9.22 -41.82 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.36 Total: 0.39 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.92 Total: -4.43 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.90 Total: -46.41 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.12 Total: -14.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.60 -9.22 -41.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161758639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.251 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds