Wall clock time and date at job start Tue Mar 31 2020 19:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47377 * 2 1 4 4 C 1.35901 * 116.99868 * 180.02562 * 3 2 1 5 5 C 1.38754 * 120.05718 * 359.95809 * 4 3 2 6 6 C 1.38123 * 119.94793 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.04933 * 0.02562 * 6 5 4 8 8 C 1.38249 * 120.11541 * 0.02847 * 7 6 5 9 9 C 1.38162 * 120.05459 * 359.95359 * 8 7 6 10 10 C 1.50697 * 120.02959 * 180.02562 * 9 8 7 11 11 N 1.46893 * 109.47282 * 260.00286 * 10 9 8 12 12 C 1.46902 * 111.00625 * 66.04190 * 11 10 9 13 13 C 1.46903 * 111.00405 * 189.99936 * 11 10 9 14 14 H 1.08991 * 109.47347 * 192.50698 * 13 11 10 15 15 C 1.53001 * 109.46803 * 312.50930 * 13 11 10 16 16 C 1.50697 * 109.46936 * 72.50473 * 13 11 10 17 17 O 1.21281 * 120.00432 * 346.97033 * 16 13 11 18 18 N 1.34775 * 120.00112 * 166.97261 * 16 13 11 19 19 C 1.46503 * 119.99797 * 0.02562 * 18 16 13 20 20 C 1.46496 * 120.00422 * 179.97438 * 18 16 13 21 21 C 1.50702 * 109.47166 * 90.00212 * 20 18 16 22 22 H 1.07999 * 120.00001 * 0.02562 * 21 20 18 23 23 C 1.37883 * 119.99978 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99890 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99756 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47084 * 90.00122 * 25 23 21 27 27 H 1.48503 * 109.47167 * 210.00157 * 25 23 21 28 28 H 1.48497 * 109.47332 * 330.00232 * 25 23 21 29 29 H 1.08995 * 109.46847 * 59.99557 * 1 2 3 30 30 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46737 * 299.99938 * 1 2 3 32 32 H 1.08997 * 109.46914 * 239.99663 * 2 1 3 33 33 H 1.09004 * 109.46734 * 120.00308 * 2 1 3 34 34 H 1.08000 * 120.02690 * 0.04176 * 5 4 3 35 35 H 1.07994 * 119.97882 * 180.29777 * 6 5 4 36 36 H 1.07999 * 119.94160 * 180.02562 * 7 6 5 37 37 H 1.07996 * 119.97137 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.46631 * 19.99892 * 10 9 8 39 39 H 1.08998 * 109.47267 * 139.99775 * 10 9 8 40 40 H 1.09000 * 109.46709 * 53.98059 * 12 11 10 41 41 H 1.08997 * 109.47667 * 173.98377 * 12 11 10 42 42 H 1.08998 * 109.46871 * 293.98491 * 12 11 10 43 43 H 1.09001 * 109.46509 * 299.99867 * 15 13 11 44 44 H 1.08995 * 109.47370 * 59.99269 * 15 13 11 45 45 H 1.08993 * 109.47026 * 179.97438 * 15 13 11 46 46 H 1.09003 * 109.47233 * 89.99838 * 19 18 16 47 47 H 1.08997 * 109.47054 * 209.99830 * 19 18 16 48 48 H 1.09004 * 109.46936 * 329.99833 * 19 18 16 49 49 H 1.09004 * 109.47249 * 210.00399 * 20 18 16 50 50 H 1.09001 * 109.47443 * 329.99817 * 20 18 16 51 51 H 0.96998 * 119.99634 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.2000 0.4256 -0.0002 6 6 5.5690 0.6091 -0.0002 7 6 6.0963 1.8875 0.0000 8 6 5.2553 2.9848 0.0007 9 6 3.8852 2.8065 0.0004 10 6 2.9690 4.0029 0.0006 11 7 2.4801 4.2450 1.3645 12 6 3.5783 4.6456 2.2542 13 6 1.4066 5.2479 1.3688 14 1 1.2159 5.5716 2.3919 15 6 1.8295 6.4511 0.5236 16 6 0.1527 4.6439 0.7910 17 8 0.2056 3.5860 0.2003 18 7 -1.0276 5.2795 0.9305 19 6 -1.0914 6.5577 1.6434 20 6 -2.2465 4.6927 0.3683 21 6 -2.8934 3.7988 1.3948 22 1 -2.4419 3.6800 2.3687 23 6 -4.0616 3.1326 1.0906 24 7 -4.6116 3.2776 -0.0952 25 14 -4.8630 2.0241 2.3627 26 1 -5.8189 2.8161 3.1775 27 1 -5.5894 0.9263 1.6753 28 1 -3.8177 1.4485 3.2465 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.7886 -0.5729 -0.0002 35 1 6.2281 -0.2463 -0.0048 36 1 7.1670 2.0290 -0.0005 37 1 5.6696 3.9821 0.0013 38 1 3.5149 4.8786 -0.3504 39 1 2.1232 3.8131 -0.6602 40 1 4.1022 5.4987 1.8232 41 1 3.1746 4.9215 3.2284 42 1 4.2729 3.8139 2.3711 43 1 2.7365 6.8878 0.9416 44 1 2.0203 6.1274 -0.4995 45 1 1.0329 7.1950 0.5264 46 1 -0.9421 7.3751 0.9380 47 1 -2.0674 6.6608 2.1177 48 1 -0.3122 6.5882 2.4051 49 1 -2.9384 5.4881 0.0915 50 1 -1.9937 4.1072 -0.5157 51 1 -5.4337 2.8092 -0.3091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172169141.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:13 Heat of formation + Delta-G solvation = -28.661113 kcal Electronic energy + Delta-G solvation = -30851.179953 eV Core-core repulsion = 26944.742385 eV Total energy + Delta-G solvation = -3906.437568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.19797 -39.28192 -37.40231 -36.58383 -34.57491 -32.72092 -32.11285 -31.23916 -30.12238 -29.33600 -27.61255 -26.73005 -25.89419 -24.95473 -23.69591 -23.20107 -21.68882 -21.24177 -20.33654 -18.16289 -17.80098 -16.62006 -16.31915 -15.99307 -15.75166 -15.56749 -15.42188 -14.69305 -14.59924 -14.29830 -14.25944 -13.81868 -13.71590 -13.18866 -13.09565 -12.91414 -12.62655 -12.44739 -12.25352 -12.13669 -12.11157 -11.90858 -11.74213 -11.60975 -11.51785 -11.36862 -11.27173 -11.15240 -11.09004 -10.83345 -10.77728 -10.51118 -10.40075 -10.36100 -10.08075 -9.52614 -8.86653 -8.56768 -8.37593 -7.92781 -7.84959 -7.45804 -5.97992 -4.01592 1.38856 1.61706 3.32731 3.39300 3.43992 3.60222 3.61530 3.79372 3.99808 4.43987 4.54142 4.84851 4.91361 5.07131 5.13867 5.20098 5.28519 5.29820 5.31393 5.32771 5.36375 5.44472 5.53179 5.55424 5.61483 5.64923 5.67999 5.73613 5.85071 5.86007 5.98511 6.00440 6.02862 6.09297 6.13529 6.30682 6.35261 6.38242 6.45949 6.55931 6.61738 6.80411 6.95962 7.09374 7.29131 7.35884 7.54754 7.68825 7.84520 8.00065 8.32466 8.59082 9.00033 9.32766 9.63594 11.09812 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.004191 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.135799 B = 6679.615007 C = 8403.570238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 O -0.267 6.267 4 C 0.163 3.837 5 C -0.222 4.222 6 C -0.083 4.083 7 C -0.172 4.172 8 C -0.079 4.079 9 C -0.111 4.111 10 C 0.102 3.898 11 N -0.507 5.507 12 C 0.026 3.974 13 C 0.063 3.937 14 H 0.096 0.904 15 C -0.181 4.181 16 C 0.507 3.493 17 O -0.502 6.502 18 N -0.607 5.607 19 C 0.085 3.915 20 C 0.250 3.750 21 C -0.519 4.519 22 H 0.056 0.944 23 C 0.061 3.939 24 N -0.896 5.896 25 Si 0.893 3.107 26 H -0.282 1.282 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.033 0.967 39 H 0.108 0.892 40 H 0.022 0.978 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.028 0.972 50 H 0.043 0.957 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.063 1.550 1.346 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 O -0.178 6.178 4 C 0.115 3.885 5 C -0.241 4.241 6 C -0.101 4.101 7 C -0.190 4.190 8 C -0.098 4.098 9 C -0.112 4.112 10 C -0.025 4.025 11 N -0.230 5.230 12 C -0.123 4.123 13 C -0.049 4.049 14 H 0.114 0.886 15 C -0.240 4.240 16 C 0.292 3.708 17 O -0.376 6.376 18 N -0.341 5.341 19 C -0.060 4.060 20 C 0.131 3.869 21 C -0.558 4.558 22 H 0.074 0.926 23 C -0.140 4.140 24 N -0.536 5.536 25 Si 0.721 3.279 26 H -0.208 1.208 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.051 0.949 39 H 0.126 0.874 40 H 0.040 0.960 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.526 0.603 1.087 18.568 hybrid contribution -0.080 -0.067 0.593 0.602 sum 18.446 0.537 1.680 18.530 Atomic orbital electron populations 1.21664 0.91848 1.01518 1.05264 1.22746 0.96783 0.82310 0.99767 1.86531 1.16915 1.27855 1.86487 1.18957 0.83670 0.93104 0.92786 1.21269 0.94382 0.98151 1.10264 1.20843 0.94289 0.97038 0.97926 1.20876 0.99284 0.92541 1.06330 1.20844 0.91920 0.98684 0.98352 1.19144 0.93327 0.92757 1.05967 1.21034 0.97929 0.92661 0.90855 1.61763 1.09058 1.42869 1.09314 1.22423 0.93992 0.99191 0.96668 1.21717 0.92115 0.90575 1.00496 0.88577 1.22410 1.02006 0.98530 1.01071 1.20053 0.83887 0.85436 0.81427 1.90702 1.85268 1.20621 1.40993 1.48110 1.09087 1.21398 1.55532 1.21646 1.02554 0.86037 0.95748 1.19196 0.79510 0.93407 0.94837 1.21449 1.07472 1.27008 0.99834 0.92574 1.24902 0.97035 0.96676 0.95401 1.69936 1.20025 1.43373 1.20251 0.86569 0.79325 0.80464 0.81500 1.20789 1.21190 1.19891 0.91091 0.91561 0.90662 0.93166 0.93017 0.85836 0.86455 0.86522 0.86198 0.94894 0.87434 0.95962 0.91831 0.91339 0.92253 0.91762 0.91174 0.94040 0.91064 0.92722 0.95447 0.93923 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.28 37.16 0.38 -2.10 16 2 C 0.06 0.91 5.46 37.16 0.20 1.12 16 3 O -0.27 -4.91 8.61 -23.65 -0.20 -5.11 16 4 C 0.16 2.61 6.66 -39.22 -0.26 2.35 16 5 C -0.22 -2.98 9.04 -39.43 -0.36 -3.34 16 6 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 7 C -0.17 -1.92 10.04 -39.56 -0.40 -2.31 16 8 C -0.08 -0.96 8.90 -39.61 -0.35 -1.32 16 9 C -0.11 -1.65 4.60 -104.48 -0.48 -2.13 16 10 C 0.10 1.59 3.24 -4.98 -0.02 1.57 16 11 N -0.51 -7.98 4.43 -237.74 -1.05 -9.03 16 12 C 0.03 0.32 8.89 60.07 0.53 0.85 16 13 C 0.06 0.99 1.90 -68.86 -0.13 0.86 16 14 H 0.10 1.39 6.34 -51.93 -0.33 1.06 16 15 C -0.18 -2.30 8.20 37.16 0.30 -1.99 16 16 C 0.51 10.52 6.80 -10.99 -0.07 10.44 16 17 O -0.50 -12.17 13.23 1.34 0.02 -12.16 16 18 N -0.61 -12.86 2.86 -182.95 -0.52 -13.38 16 19 C 0.08 1.35 9.20 59.85 0.55 1.90 16 20 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 21 C -0.52 -14.68 9.39 -34.44 -0.32 -15.01 16 22 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 25 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 33 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 34 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 38 H 0.03 0.45 6.65 -51.93 -0.35 0.10 16 39 H 0.11 2.05 5.69 -51.93 -0.30 1.76 16 40 H 0.02 0.24 7.22 -51.93 -0.37 -0.14 16 41 H 0.06 0.73 7.86 -51.93 -0.41 0.32 16 42 H 0.07 0.86 7.02 -51.93 -0.36 0.49 16 43 H 0.06 0.63 7.18 -51.93 -0.37 0.25 16 44 H 0.06 0.87 6.53 -51.93 -0.34 0.53 16 45 H 0.07 0.84 6.08 -51.93 -0.32 0.53 16 46 H 0.04 0.57 7.29 -51.93 -0.38 0.19 16 47 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 48 H 0.05 0.73 6.09 -51.93 -0.32 0.41 16 49 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 50 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -33.01 400.40 -9.22 -42.23 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.27 Total: 2.68 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.94 Total: -2.33 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.84 Total: -48.25 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.19 Total: -17.27 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.01 -9.22 -42.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172169141.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.570 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds