Wall clock time and date at job start Tue Mar 31 2020 19:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47377 * 2 1 4 4 C 1.35901 * 116.99868 * 180.02562 * 3 2 1 5 5 C 1.38754 * 120.05718 * 359.95809 * 4 3 2 6 6 C 1.38123 * 119.94793 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.04933 * 0.02562 * 6 5 4 8 8 C 1.38249 * 120.11541 * 0.02847 * 7 6 5 9 9 C 1.38162 * 120.05459 * 359.95359 * 8 7 6 10 10 C 1.50697 * 120.02959 * 180.02562 * 9 8 7 11 11 N 1.46893 * 109.47282 * 260.00286 * 10 9 8 12 12 C 1.46902 * 111.00625 * 66.04190 * 11 10 9 13 13 C 1.46903 * 111.00405 * 189.99936 * 11 10 9 14 14 H 1.08991 * 109.47347 * 192.50698 * 13 11 10 15 15 C 1.53001 * 109.46803 * 312.50930 * 13 11 10 16 16 C 1.50697 * 109.46936 * 72.50473 * 13 11 10 17 17 O 1.21281 * 120.00432 * 346.97033 * 16 13 11 18 18 N 1.34775 * 120.00112 * 166.97261 * 16 13 11 19 19 C 1.46503 * 119.99797 * 0.02562 * 18 16 13 20 20 C 1.46496 * 120.00422 * 179.97438 * 18 16 13 21 21 C 1.50702 * 109.47166 * 90.00212 * 20 18 16 22 22 H 1.07999 * 120.00001 * 0.02562 * 21 20 18 23 23 C 1.37883 * 119.99978 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99890 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99756 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47084 * 90.00122 * 25 23 21 27 27 H 1.48503 * 109.47167 * 210.00157 * 25 23 21 28 28 H 1.48497 * 109.47332 * 330.00232 * 25 23 21 29 29 H 1.08995 * 109.46847 * 59.99557 * 1 2 3 30 30 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46737 * 299.99938 * 1 2 3 32 32 H 1.08997 * 109.46914 * 239.99663 * 2 1 3 33 33 H 1.09004 * 109.46734 * 120.00308 * 2 1 3 34 34 H 1.08000 * 120.02690 * 0.04176 * 5 4 3 35 35 H 1.07994 * 119.97882 * 180.29777 * 6 5 4 36 36 H 1.07999 * 119.94160 * 180.02562 * 7 6 5 37 37 H 1.07996 * 119.97137 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.46631 * 19.99892 * 10 9 8 39 39 H 1.08998 * 109.47267 * 139.99775 * 10 9 8 40 40 H 1.09000 * 109.46709 * 53.98059 * 12 11 10 41 41 H 1.08997 * 109.47667 * 173.98377 * 12 11 10 42 42 H 1.08998 * 109.46871 * 293.98491 * 12 11 10 43 43 H 1.09001 * 109.46509 * 299.99867 * 15 13 11 44 44 H 1.08995 * 109.47370 * 59.99269 * 15 13 11 45 45 H 1.08993 * 109.47026 * 179.97438 * 15 13 11 46 46 H 1.09003 * 109.47233 * 89.99838 * 19 18 16 47 47 H 1.08997 * 109.47054 * 209.99830 * 19 18 16 48 48 H 1.09004 * 109.46936 * 329.99833 * 19 18 16 49 49 H 1.09004 * 109.47249 * 210.00399 * 20 18 16 50 50 H 1.09001 * 109.47443 * 329.99817 * 20 18 16 51 51 H 0.96998 * 119.99634 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.2000 0.4256 -0.0002 6 6 5.5690 0.6091 -0.0002 7 6 6.0963 1.8875 0.0000 8 6 5.2553 2.9848 0.0007 9 6 3.8852 2.8065 0.0004 10 6 2.9690 4.0029 0.0006 11 7 2.4801 4.2450 1.3645 12 6 3.5783 4.6456 2.2542 13 6 1.4066 5.2479 1.3688 14 1 1.2159 5.5716 2.3919 15 6 1.8295 6.4511 0.5236 16 6 0.1527 4.6439 0.7910 17 8 0.2056 3.5860 0.2003 18 7 -1.0276 5.2795 0.9305 19 6 -1.0914 6.5577 1.6434 20 6 -2.2465 4.6927 0.3683 21 6 -2.8934 3.7988 1.3948 22 1 -2.4419 3.6800 2.3687 23 6 -4.0616 3.1326 1.0906 24 7 -4.6116 3.2776 -0.0952 25 14 -4.8630 2.0241 2.3627 26 1 -5.8189 2.8161 3.1775 27 1 -5.5894 0.9263 1.6753 28 1 -3.8177 1.4485 3.2465 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.7886 -0.5729 -0.0002 35 1 6.2281 -0.2463 -0.0048 36 1 7.1670 2.0290 -0.0005 37 1 5.6696 3.9821 0.0013 38 1 3.5149 4.8786 -0.3504 39 1 2.1232 3.8131 -0.6602 40 1 4.1022 5.4987 1.8232 41 1 3.1746 4.9215 3.2284 42 1 4.2729 3.8139 2.3711 43 1 2.7365 6.8878 0.9416 44 1 2.0203 6.1274 -0.4995 45 1 1.0329 7.1950 0.5264 46 1 -0.9421 7.3751 0.9380 47 1 -2.0674 6.6608 2.1177 48 1 -0.3122 6.5882 2.4051 49 1 -2.9384 5.4881 0.0915 50 1 -1.9937 4.1072 -0.5157 51 1 -5.4337 2.8092 -0.3091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172169141.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:12 Heat of formation + Delta-G solvation = -49.946303 kcal Electronic energy + Delta-G solvation = -30852.102948 eV Core-core repulsion = 26944.742385 eV Total energy + Delta-G solvation = -3907.360563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35120 -40.67412 -38.62352 -37.80082 -36.32625 -34.73433 -33.33186 -32.49363 -31.29516 -30.41149 -29.46912 -27.77055 -27.35243 -26.29546 -24.95100 -24.86888 -22.96448 -22.36902 -21.55558 -19.65762 -18.91099 -18.64071 -17.89206 -17.28620 -16.92272 -16.79571 -16.74286 -16.40258 -15.93783 -15.55607 -15.48917 -15.14778 -14.99414 -14.43005 -14.31414 -14.18059 -14.08735 -13.78319 -13.60718 -13.41567 -13.36539 -13.33937 -13.13968 -12.93535 -12.84943 -12.79730 -12.58359 -12.56164 -12.46418 -12.42813 -12.25559 -12.15537 -11.88885 -11.64335 -11.57840 -11.48644 -10.61061 -10.22581 -9.74035 -9.26783 -9.03014 -8.91849 -8.18187 -6.32230 0.42958 0.63085 1.35037 1.37683 1.48374 2.06342 2.35668 2.47245 2.50115 2.83751 3.10404 3.31692 3.78048 3.88556 3.92888 4.03538 4.05190 4.09128 4.17237 4.26702 4.34027 4.38420 4.42524 4.48290 4.53186 4.62320 4.66040 4.67394 4.71054 4.81156 4.82817 4.87078 4.91241 4.96729 4.98188 5.07503 5.08503 5.20016 5.25593 5.27885 5.29834 5.52405 5.59850 5.62931 5.65729 5.94139 6.02333 6.11325 6.13452 6.30038 6.73974 6.76297 6.96774 7.34434 7.73733 8.88056 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.004191 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.135799 B = 6679.615007 C = 8403.570238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.061 3.939 3 O -0.306 6.306 4 C 0.126 3.874 5 C -0.229 4.229 6 C -0.082 4.082 7 C -0.164 4.164 8 C -0.076 4.076 9 C -0.131 4.131 10 C 0.114 3.886 11 N -0.534 5.534 12 C 0.030 3.970 13 C 0.076 3.924 14 H 0.114 0.886 15 C -0.171 4.171 16 C 0.492 3.508 17 O -0.547 6.547 18 N -0.617 5.617 19 C 0.081 3.919 20 C 0.268 3.732 21 C -0.533 4.533 22 H 0.047 0.953 23 C 0.011 3.989 24 N -0.928 5.928 25 Si 0.961 3.039 26 H -0.264 1.264 27 H -0.280 1.280 28 H -0.275 1.275 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.017 0.983 50 H -0.005 1.005 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.199 2.143 3.132 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.014 4.014 3 O -0.218 6.218 4 C 0.079 3.921 5 C -0.248 4.248 6 C -0.100 4.100 7 C -0.182 4.182 8 C -0.095 4.095 9 C -0.132 4.132 10 C -0.013 4.013 11 N -0.258 5.258 12 C -0.117 4.117 13 C -0.036 4.036 14 H 0.132 0.868 15 C -0.230 4.230 16 C 0.280 3.720 17 O -0.424 6.424 18 N -0.351 5.351 19 C -0.062 4.062 20 C 0.146 3.854 21 C -0.572 4.572 22 H 0.066 0.934 23 C -0.188 4.188 24 N -0.569 5.569 25 Si 0.786 3.214 26 H -0.189 1.189 27 H -0.205 1.205 28 H -0.200 1.200 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.035 0.965 50 H 0.013 0.987 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.692 1.241 2.896 21.919 hybrid contribution -0.973 -0.260 -0.010 1.007 sum 20.718 0.982 2.886 20.941 Atomic orbital electron populations 1.21599 0.93829 1.02449 1.01642 1.22764 0.95089 0.82129 1.01442 1.86484 1.18902 1.28987 1.87476 1.19349 0.82993 0.94639 0.95094 1.21468 0.95238 0.97856 1.10208 1.21248 0.93691 0.98563 0.96518 1.21309 1.00866 0.91894 1.04158 1.21113 0.90629 1.00432 0.97288 1.19320 0.94531 0.92088 1.07298 1.20775 0.96488 0.93863 0.90182 1.61645 1.10367 1.43795 1.09954 1.22429 0.92950 0.99936 0.96417 1.21598 0.89533 0.91168 1.01266 0.86790 1.22349 1.03714 0.97159 0.99805 1.21177 0.85210 0.84991 0.80671 1.90698 1.86109 1.22812 1.42779 1.48135 1.07796 1.23172 1.55956 1.21909 1.03345 0.84145 0.96770 1.18600 0.81325 0.92389 0.93067 1.21660 1.07921 1.27830 0.99785 0.93449 1.25769 0.97592 0.97972 0.97455 1.70055 1.20496 1.44267 1.22046 0.85515 0.78367 0.78617 0.78927 1.18917 1.20522 1.20028 0.94178 0.88299 0.94587 0.91062 0.91439 0.84941 0.83442 0.83182 0.83748 0.92947 0.92165 0.93494 0.90865 0.91674 0.88923 0.93241 0.90293 0.91349 0.91978 0.89386 0.96519 0.98707 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 10.28 71.98 0.74 -4.38 16 2 C 0.06 1.97 5.46 71.98 0.39 2.36 16 3 O -0.31 -12.05 8.61 -88.41 -0.76 -12.81 16 4 C 0.13 4.13 6.66 22.51 0.15 4.28 16 5 C -0.23 -5.95 9.04 22.37 0.20 -5.74 16 6 C -0.08 -1.66 10.04 22.25 0.22 -1.43 16 7 C -0.16 -3.06 10.04 22.28 0.22 -2.83 16 8 C -0.08 -1.65 8.90 22.25 0.20 -1.45 16 9 C -0.13 -3.87 4.60 -19.77 -0.09 -3.97 16 10 C 0.11 3.58 3.24 85.56 0.28 3.86 16 11 N -0.53 -16.50 4.43 -906.08 -4.01 -20.51 16 12 C 0.03 0.66 8.89 127.69 1.14 1.79 16 13 C 0.08 2.32 1.90 44.17 0.08 2.40 16 14 H 0.11 3.03 6.34 -2.39 -0.02 3.01 16 15 C -0.17 -3.97 8.20 71.98 0.59 -3.38 16 16 C 0.49 21.34 6.80 87.66 0.60 21.93 16 17 O -0.55 -28.84 13.23 1.00 0.01 -28.82 16 18 N -0.62 -27.14 2.86 -851.12 -2.43 -29.57 16 19 C 0.08 2.52 9.20 127.77 1.17 3.69 16 20 C 0.27 14.92 5.16 85.63 0.44 15.36 16 21 C -0.53 -31.65 9.39 25.60 0.24 -31.41 16 22 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 23 C 0.01 0.63 5.46 84.66 0.46 1.10 16 24 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 25 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 26 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.95 7.66 -2.39 -0.02 1.93 16 33 H 0.07 1.91 7.66 -2.38 -0.02 1.90 16 34 H 0.13 3.04 6.30 -2.91 -0.02 3.02 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.14 2.34 8.04 -2.91 -0.02 2.32 16 38 H 0.05 1.37 6.65 -2.39 -0.02 1.35 16 39 H 0.06 2.48 5.69 -2.39 -0.01 2.47 16 40 H 0.05 0.80 7.22 -2.39 -0.02 0.78 16 41 H 0.07 1.45 7.86 -2.39 -0.02 1.43 16 42 H 0.06 1.48 7.02 -2.39 -0.02 1.46 16 43 H 0.09 1.56 7.18 -2.39 -0.02 1.54 16 44 H 0.05 1.30 6.53 -2.39 -0.02 1.29 16 45 H 0.08 1.68 6.08 -2.39 -0.01 1.67 16 46 H 0.07 1.76 7.29 -2.39 -0.02 1.75 16 47 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 48 H 0.09 2.14 6.09 -2.38 -0.01 2.12 16 49 H 0.02 0.95 8.07 -2.38 -0.02 0.93 16 50 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 51 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -79.55 400.40 3.07 -76.48 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.91 Total: 21.91 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 7.04 Total: 2.19 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -6.16 Total: -107.05 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.75 Total: -41.63 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -79.55 3.07 -76.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172169141.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.532 kcal (2) G-P(sol) polarization free energy of solvation -79.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds