Wall clock time and date at job start Tue Mar 31 2020 18:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46754 * 2 1 4 4 C 1.46501 * 120.00119 * 269.99486 * 3 2 1 5 5 C 1.52995 * 109.47559 * 270.00680 * 4 3 2 6 6 C 1.34780 * 120.00003 * 90.00628 * 3 2 1 7 7 O 1.21285 * 119.99647 * 359.97438 * 6 3 2 8 8 C 1.50692 * 120.00027 * 179.97438 * 6 3 2 9 9 C 1.53001 * 109.47102 * 179.97438 * 8 6 3 10 10 H 1.09007 * 109.47102 * 55.00192 * 9 8 6 11 11 C 1.53001 * 109.47396 * 174.99845 * 9 8 6 12 12 N 1.46903 * 109.47409 * 295.00364 * 9 8 6 13 13 C 1.46896 * 110.99987 * 155.00022 * 12 9 8 14 14 C 1.50701 * 109.47050 * 179.97438 * 13 12 9 15 15 C 1.38302 * 119.93101 * 89.99407 * 14 13 12 16 16 C 1.38105 * 120.06695 * 180.02562 * 15 14 13 17 17 C 1.38871 * 119.93200 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.07178 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99766 * 354.46580 * 18 17 16 20 20 H 1.08005 * 119.99910 * 5.05947 * 19 18 17 21 21 C 1.38653 * 120.00325 * 185.05796 * 19 18 17 22 22 N 1.31555 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00359 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47164 * 89.99653 * 23 21 19 25 25 H 1.48499 * 109.47014 * 210.00195 * 23 21 19 26 26 H 1.48506 * 109.46904 * 329.99621 * 23 21 19 27 27 C 1.38880 * 119.86456 * 0.27348 * 17 16 15 28 28 C 1.38102 * 119.92774 * 359.49328 * 27 17 16 29 29 H 1.09006 * 109.46884 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47316 * 299.99485 * 1 2 3 31 31 H 1.09001 * 109.47274 * 60.00219 * 1 2 3 32 32 H 1.09004 * 109.46817 * 240.00433 * 2 1 3 33 33 H 1.08994 * 109.47093 * 120.00447 * 2 1 3 34 34 H 1.08997 * 109.46707 * 30.01001 * 4 3 2 35 35 H 1.09007 * 109.46881 * 150.00221 * 4 3 2 36 36 H 1.08998 * 109.47544 * 59.99791 * 5 4 3 37 37 H 1.08996 * 109.47352 * 180.02562 * 5 4 3 38 38 H 1.09008 * 109.46671 * 299.99870 * 5 4 3 39 39 H 1.09008 * 109.47166 * 59.99961 * 8 6 3 40 40 H 1.08999 * 109.47662 * 299.99750 * 8 6 3 41 41 H 1.09000 * 109.46961 * 180.02562 * 11 9 8 42 42 H 1.09003 * 109.47094 * 300.00390 * 11 9 8 43 43 H 1.08999 * 109.46850 * 60.00401 * 11 9 8 44 44 H 1.00895 * 111.00134 * 31.04191 * 12 9 8 45 45 H 1.08992 * 109.47420 * 59.99615 * 13 12 9 46 46 H 1.09000 * 109.46921 * 299.99445 * 13 12 9 47 47 H 1.08001 * 119.96675 * 0.02562 * 15 14 13 48 48 H 1.07996 * 120.03107 * 179.97438 * 16 15 14 49 49 H 0.97003 * 120.00171 * 179.97438 * 22 21 19 50 50 H 1.08001 * 120.03810 * 179.72208 * 27 17 16 51 51 H 1.07994 * 119.96815 * 180.22560 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7074 1.8314 -1.7104 6 6 2.2430 2.0165 1.1672 7 8 2.0405 1.4448 2.2176 8 6 2.7457 3.4371 1.1672 9 6 2.9151 3.9182 2.6097 10 1 3.5635 3.2277 3.1493 11 6 3.5424 5.3137 2.6117 12 7 1.6018 3.9707 3.2659 13 6 1.7357 3.8397 4.7229 14 6 0.3713 3.8986 5.3600 15 6 -0.3507 2.7349 5.5535 16 6 -1.6016 2.7857 6.1366 17 6 -2.1341 4.0067 6.5292 18 8 -3.3632 4.0598 7.1032 19 6 -4.0627 2.9085 7.1594 20 1 -3.6088 1.9844 6.8331 21 6 -5.3647 2.9109 7.6362 22 7 -5.9174 4.0364 8.0341 23 14 -6.3336 1.3157 7.7148 24 1 -6.1155 0.6686 9.0334 25 1 -7.7793 1.6055 7.5386 26 1 -5.8761 0.4050 6.6346 27 6 -1.4088 5.1740 6.3288 28 6 -0.1565 5.1161 5.7496 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.8745 0.7623 -1.8408 37 1 3.8892 2.3456 -2.6541 38 1 4.3882 2.2156 -0.9507 39 1 2.0280 4.0766 0.6533 40 1 3.7060 3.4828 0.6536 41 1 3.6635 5.6561 3.6394 42 1 4.5169 5.2747 2.1249 43 1 2.8941 6.0042 2.0723 44 1 0.9837 3.2649 2.8947 45 1 2.3506 4.6540 5.1059 46 1 2.2070 2.8859 4.9601 47 1 0.0641 1.7856 5.2484 48 1 -2.1651 1.8767 6.2871 49 1 -6.8284 4.0382 8.3673 50 1 -1.8222 6.1255 6.6290 51 1 0.4096 6.0230 5.5968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180546950.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:46 Heat of formation + Delta-G solvation = -47.536743 kcal Electronic energy + Delta-G solvation = -28824.466725 eV Core-core repulsion = 24917.210648 eV Total energy + Delta-G solvation = -3907.256076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45732 -38.95439 -37.41527 -36.50031 -35.80683 -32.86537 -32.31970 -31.67639 -30.04823 -29.97372 -28.48016 -27.98460 -25.46386 -24.11286 -23.97880 -23.22495 -21.82230 -20.69178 -20.27485 -19.10263 -17.87864 -17.42026 -16.98592 -16.73992 -15.98475 -15.40750 -15.15833 -14.65662 -14.45780 -14.36848 -14.29916 -13.97444 -13.88430 -13.54648 -13.42390 -13.22902 -13.02275 -12.86106 -12.58557 -12.49315 -12.37300 -12.22661 -12.20620 -11.99747 -11.85456 -11.74571 -11.59204 -11.51514 -11.26123 -11.16652 -10.87567 -10.64817 -10.53614 -10.39099 -10.33568 -9.92962 -9.23105 -9.03760 -8.76145 -8.17657 -8.03265 -7.06563 -6.37977 -3.96407 2.35394 2.40771 2.42257 2.67015 3.17071 3.17812 3.22751 4.02756 4.18905 4.32526 4.43774 4.60685 4.67803 4.76905 4.80509 4.89560 5.01024 5.11375 5.15902 5.18172 5.18645 5.24194 5.33261 5.39121 5.42898 5.48760 5.51006 5.54916 5.65511 5.68422 5.70800 5.75256 5.90342 5.93654 5.99489 6.02168 6.08931 6.20874 6.26207 6.34419 6.56144 6.83735 7.03305 7.05811 7.14527 7.27615 7.40117 7.51073 7.54591 7.69063 7.95505 7.96001 8.07874 9.08052 9.79897 10.80393 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.002582 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.318379 B =10841.290779 C =12576.524193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.616 5.616 4 C 0.103 3.897 5 C -0.172 4.172 6 C 0.512 3.488 7 O -0.532 6.532 8 C -0.144 4.144 9 C 0.095 3.905 10 H 0.048 0.952 11 C -0.139 4.139 12 N -0.676 5.676 13 C 0.121 3.879 14 C -0.179 4.179 15 C -0.063 4.063 16 C -0.234 4.234 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.196 4.196 28 C -0.054 4.054 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.346 0.654 45 H 0.066 0.934 46 H 0.030 0.970 47 H 0.104 0.896 48 H 0.125 0.875 49 H 0.269 0.731 50 H 0.115 0.885 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.663 -3.699 -20.582 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.350 5.350 4 C -0.021 4.021 5 C -0.231 4.231 6 C 0.300 3.700 7 O -0.409 6.409 8 C -0.184 4.184 9 C -0.016 4.016 10 H 0.066 0.934 11 C -0.197 4.197 12 N -0.310 5.310 13 C -0.007 4.007 14 C -0.181 4.181 15 C -0.082 4.082 16 C -0.254 4.254 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.215 4.215 28 C -0.073 4.073 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.166 0.834 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.122 0.878 48 H 0.142 0.858 49 H 0.079 0.921 50 H 0.133 0.867 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 19.176 -3.079 -19.814 27.745 hybrid contribution -0.341 -1.866 -0.098 1.900 sum 18.835 -4.945 -19.912 27.851 Atomic orbital electron populations 1.22132 0.95580 1.02375 1.02623 1.21405 0.94631 0.82217 1.02872 1.48086 1.66362 1.14457 1.06104 1.21591 0.96868 0.98050 0.85552 1.22224 0.96640 1.02466 1.01727 1.20864 0.77093 0.88776 0.83242 1.90734 1.51443 1.67887 1.30792 1.22005 1.03219 0.93128 1.00045 1.21267 0.92223 0.96370 0.91703 0.93419 1.21799 0.99255 0.96301 1.02367 1.60802 1.10291 1.55343 1.04573 1.20590 0.94230 0.99162 0.86720 1.19163 0.97378 0.93469 1.08057 1.20644 0.93803 0.96854 0.96865 1.21117 0.97643 0.98162 1.08453 1.19395 0.86747 0.93178 0.90553 1.83977 1.22716 1.35102 1.66604 1.21316 0.95344 0.85388 1.44568 0.89178 1.25267 0.95887 0.98878 0.96534 1.70042 1.14519 1.25755 1.39712 0.85732 0.78729 0.80125 0.78961 1.19933 1.20297 1.19246 1.20209 0.96125 0.96522 1.08637 1.20461 0.94051 0.96380 0.96376 0.91593 0.91782 0.92681 0.90893 0.89903 0.90213 0.89967 0.92314 0.91293 0.92316 0.87997 0.88544 0.92275 0.92995 0.91896 0.83374 0.91567 0.95223 0.87808 0.85779 0.92135 0.86665 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.16 0.38 -1.10 16 2 C 0.11 0.92 6.13 -4.04 -0.02 0.90 16 3 N -0.62 -5.18 2.47 -173.69 -0.43 -5.61 16 4 C 0.10 0.53 5.93 -4.04 -0.02 0.51 16 5 C -0.17 -0.72 10.24 37.15 0.38 -0.34 16 6 C 0.51 5.62 7.14 -10.99 -0.08 5.54 16 7 O -0.53 -8.01 14.16 5.55 0.08 -7.93 16 8 C -0.14 -1.25 3.85 -27.89 -0.11 -1.36 16 9 C 0.09 1.05 2.21 -67.71 -0.15 0.90 16 10 H 0.05 0.60 7.61 -51.92 -0.40 0.20 16 11 C -0.14 -1.28 9.41 37.16 0.35 -0.93 16 12 N -0.68 -9.65 6.17 -107.99 -0.67 -10.31 16 13 C 0.12 1.89 5.61 -4.98 -0.03 1.87 16 14 C -0.18 -3.37 5.40 -104.57 -0.56 -3.93 16 15 C -0.06 -1.28 9.69 -39.61 -0.38 -1.66 16 16 C -0.23 -5.46 9.17 -39.40 -0.36 -5.82 16 17 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 18 O -0.18 -5.35 9.76 0.04 0.00 -5.35 16 19 C -0.39 -11.30 9.49 30.89 0.29 -11.00 16 20 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 23 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 C -0.20 -4.38 9.99 -39.39 -0.39 -4.78 16 28 C -0.05 -1.04 9.69 -39.61 -0.38 -1.42 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.08 0.84 7.42 -51.93 -0.39 0.45 16 34 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 35 H 0.08 0.36 6.44 -51.92 -0.33 0.03 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.06 0.28 7.22 -51.92 -0.37 -0.10 16 39 H 0.10 0.80 7.40 -51.92 -0.38 0.42 16 40 H 0.10 0.60 7.18 -51.93 -0.37 0.23 16 41 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.35 5.51 6.49 -39.29 -0.26 5.25 16 45 H 0.07 0.95 7.38 -51.93 -0.38 0.57 16 46 H 0.03 0.48 8.00 -51.93 -0.42 0.06 16 47 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 48 H 0.12 2.90 5.64 -52.49 -0.30 2.61 16 49 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 51 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 412.49 15.07 6.22 6.22 Total: -1.00 -33.59 412.49 -8.97 -42.57 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.46 Total: 7.51 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -1.45 Total: -17.97 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.34 Total: -41.20 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.59 -8.97 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180546950.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.968 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds