Wall clock time and date at job start Tue Mar 31 2020 18:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46754 * 2 1 4 4 C 1.46501 * 120.00119 * 269.99486 * 3 2 1 5 5 C 1.52995 * 109.47559 * 270.00680 * 4 3 2 6 6 C 1.34780 * 120.00003 * 90.00628 * 3 2 1 7 7 O 1.21285 * 119.99647 * 359.97438 * 6 3 2 8 8 C 1.50692 * 120.00027 * 179.97438 * 6 3 2 9 9 C 1.53001 * 109.47102 * 179.97438 * 8 6 3 10 10 H 1.09007 * 109.47102 * 55.00192 * 9 8 6 11 11 C 1.53001 * 109.47396 * 174.99845 * 9 8 6 12 12 N 1.46903 * 109.47409 * 295.00364 * 9 8 6 13 13 C 1.46896 * 110.99987 * 155.00022 * 12 9 8 14 14 C 1.50701 * 109.47050 * 179.97438 * 13 12 9 15 15 C 1.38302 * 119.93101 * 89.99407 * 14 13 12 16 16 C 1.38105 * 120.06695 * 180.02562 * 15 14 13 17 17 C 1.38871 * 119.93200 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.07178 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99766 * 354.46580 * 18 17 16 20 20 H 1.08005 * 119.99910 * 5.05947 * 19 18 17 21 21 C 1.38653 * 120.00325 * 185.05796 * 19 18 17 22 22 N 1.31555 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00359 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47164 * 89.99653 * 23 21 19 25 25 H 1.48499 * 109.47014 * 210.00195 * 23 21 19 26 26 H 1.48506 * 109.46904 * 329.99621 * 23 21 19 27 27 C 1.38880 * 119.86456 * 0.27348 * 17 16 15 28 28 C 1.38102 * 119.92774 * 359.49328 * 27 17 16 29 29 H 1.09006 * 109.46884 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47316 * 299.99485 * 1 2 3 31 31 H 1.09001 * 109.47274 * 60.00219 * 1 2 3 32 32 H 1.09004 * 109.46817 * 240.00433 * 2 1 3 33 33 H 1.08994 * 109.47093 * 120.00447 * 2 1 3 34 34 H 1.08997 * 109.46707 * 30.01001 * 4 3 2 35 35 H 1.09007 * 109.46881 * 150.00221 * 4 3 2 36 36 H 1.08998 * 109.47544 * 59.99791 * 5 4 3 37 37 H 1.08996 * 109.47352 * 180.02562 * 5 4 3 38 38 H 1.09008 * 109.46671 * 299.99870 * 5 4 3 39 39 H 1.09008 * 109.47166 * 59.99961 * 8 6 3 40 40 H 1.08999 * 109.47662 * 299.99750 * 8 6 3 41 41 H 1.09000 * 109.46961 * 180.02562 * 11 9 8 42 42 H 1.09003 * 109.47094 * 300.00390 * 11 9 8 43 43 H 1.08999 * 109.46850 * 60.00401 * 11 9 8 44 44 H 1.00895 * 111.00134 * 31.04191 * 12 9 8 45 45 H 1.08992 * 109.47420 * 59.99615 * 13 12 9 46 46 H 1.09000 * 109.46921 * 299.99445 * 13 12 9 47 47 H 1.08001 * 119.96675 * 0.02562 * 15 14 13 48 48 H 1.07996 * 120.03107 * 179.97438 * 16 15 14 49 49 H 0.97003 * 120.00171 * 179.97438 * 22 21 19 50 50 H 1.08001 * 120.03810 * 179.72208 * 27 17 16 51 51 H 1.07994 * 119.96815 * 180.22560 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7074 1.8314 -1.7104 6 6 2.2430 2.0165 1.1672 7 8 2.0405 1.4448 2.2176 8 6 2.7457 3.4371 1.1672 9 6 2.9151 3.9182 2.6097 10 1 3.5635 3.2277 3.1493 11 6 3.5424 5.3137 2.6117 12 7 1.6018 3.9707 3.2659 13 6 1.7357 3.8397 4.7229 14 6 0.3713 3.8986 5.3600 15 6 -0.3507 2.7349 5.5535 16 6 -1.6016 2.7857 6.1366 17 6 -2.1341 4.0067 6.5292 18 8 -3.3632 4.0598 7.1032 19 6 -4.0627 2.9085 7.1594 20 1 -3.6088 1.9844 6.8331 21 6 -5.3647 2.9109 7.6362 22 7 -5.9174 4.0364 8.0341 23 14 -6.3336 1.3157 7.7148 24 1 -6.1155 0.6686 9.0334 25 1 -7.7793 1.6055 7.5386 26 1 -5.8761 0.4050 6.6346 27 6 -1.4088 5.1740 6.3288 28 6 -0.1565 5.1161 5.7496 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.8745 0.7623 -1.8408 37 1 3.8892 2.3456 -2.6541 38 1 4.3882 2.2156 -0.9507 39 1 2.0280 4.0766 0.6533 40 1 3.7060 3.4828 0.6536 41 1 3.6635 5.6561 3.6394 42 1 4.5169 5.2747 2.1249 43 1 2.8941 6.0042 2.0723 44 1 0.9837 3.2649 2.8947 45 1 2.3506 4.6540 5.1059 46 1 2.2070 2.8859 4.9601 47 1 0.0641 1.7856 5.2484 48 1 -2.1651 1.8767 6.2871 49 1 -6.8284 4.0382 8.3673 50 1 -1.8222 6.1255 6.6290 51 1 0.4096 6.0230 5.5968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180546950.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:45 Heat of formation + Delta-G solvation = -68.678545 kcal Electronic energy + Delta-G solvation = -28825.383502 eV Core-core repulsion = 24917.210648 eV Total energy + Delta-G solvation = -3908.172854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25488 -40.77648 -38.79333 -37.66517 -36.85287 -34.41028 -33.58772 -32.76510 -31.79345 -30.67672 -29.88042 -28.69320 -27.47536 -25.48475 -24.48278 -24.03124 -23.61505 -21.96855 -21.52268 -19.87858 -19.78862 -18.86808 -18.12913 -17.56013 -16.91259 -16.59312 -16.45241 -16.23767 -15.98139 -15.59633 -15.45301 -15.18989 -15.04110 -14.82334 -14.63333 -14.38922 -14.10448 -13.92870 -13.75105 -13.65783 -13.45917 -13.31728 -13.02926 -12.97966 -12.87167 -12.80082 -12.67859 -12.51005 -12.37980 -12.28319 -12.15018 -12.02948 -11.97719 -11.83728 -11.62854 -11.18986 -10.80824 -10.76999 -9.79204 -9.72496 -9.31157 -8.90977 -8.48260 -6.16391 0.58915 0.66981 1.32748 1.42205 1.50487 1.62288 2.03697 2.16609 2.77817 3.10096 3.49088 3.51410 3.54688 3.82208 4.02972 4.05335 4.07293 4.14112 4.20211 4.21815 4.33037 4.44032 4.46237 4.48824 4.54049 4.60173 4.61062 4.70743 4.72998 4.74520 4.79539 4.85010 4.93672 4.99420 5.02468 5.05396 5.08167 5.13778 5.17381 5.24226 5.29342 5.39285 5.48523 5.57739 5.62651 5.69897 5.82478 6.01795 6.15029 6.24538 6.37701 6.48752 6.96243 7.18582 7.76830 8.74980 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.002582 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.318379 B =10841.290779 C =12576.524193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.612 5.612 4 C 0.096 3.904 5 C -0.168 4.168 6 C 0.502 3.498 7 O -0.584 6.584 8 C -0.135 4.135 9 C 0.093 3.907 10 H 0.033 0.967 11 C -0.134 4.134 12 N -0.679 5.679 13 C 0.127 3.873 14 C -0.156 4.156 15 C -0.065 4.065 16 C -0.242 4.242 17 C 0.115 3.885 18 O -0.230 6.230 19 C -0.415 4.415 20 H 0.097 0.903 21 C -0.022 4.022 22 N -0.919 5.919 23 Si 1.018 2.982 24 H -0.262 1.262 25 H -0.268 1.268 26 H -0.256 1.256 27 C -0.202 4.202 28 C -0.044 4.044 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.335 0.665 45 H 0.088 0.912 46 H 0.024 0.976 47 H 0.119 0.881 48 H 0.114 0.886 49 H 0.273 0.727 50 H 0.117 0.883 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.213 -3.797 -23.502 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.344 5.344 4 C -0.026 4.026 5 C -0.226 4.226 6 C 0.292 3.708 7 O -0.464 6.464 8 C -0.175 4.175 9 C -0.017 4.017 10 H 0.051 0.949 11 C -0.191 4.191 12 N -0.311 5.311 13 C -0.002 4.002 14 C -0.157 4.157 15 C -0.084 4.084 16 C -0.262 4.262 17 C 0.065 3.935 18 O -0.137 6.137 19 C -0.491 4.491 20 H 0.114 0.886 21 C -0.219 4.219 22 N -0.557 5.557 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.192 1.192 26 H -0.180 1.180 27 C -0.221 4.221 28 C -0.063 4.063 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.154 0.846 45 H 0.106 0.894 46 H 0.042 0.958 47 H 0.137 0.863 48 H 0.132 0.868 49 H 0.082 0.918 50 H 0.135 0.865 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 21.796 -3.160 -22.800 31.700 hybrid contribution -0.812 -1.786 0.620 2.058 sum 20.984 -4.946 -22.180 30.931 Atomic orbital electron populations 1.22081 0.96014 1.02664 1.01408 1.21428 0.94202 0.82526 1.03107 1.48220 1.65057 1.14426 1.06740 1.21876 0.98008 0.98514 0.84181 1.22183 0.95549 1.02394 1.02440 1.21348 0.76667 0.89624 0.83174 1.90709 1.53872 1.69137 1.32691 1.22001 1.05078 0.91543 0.98847 1.21387 0.90208 0.97478 0.92663 0.94898 1.21768 1.00437 0.94632 1.02305 1.60844 1.12089 1.54673 1.03521 1.20555 0.91959 0.99840 0.87831 1.19633 0.98224 0.92593 1.05226 1.20839 0.92813 0.98432 0.96300 1.21158 0.98773 0.97211 1.09009 1.19905 0.86367 0.95058 0.92184 1.83939 1.24661 1.35740 1.69353 1.21783 0.96199 0.85810 1.45320 0.88572 1.26573 0.96579 1.03117 0.95655 1.70180 1.15253 1.28566 1.41745 0.84604 0.77018 0.75064 0.79606 1.18705 1.19206 1.18012 1.20489 0.97149 0.95773 1.08689 1.20841 0.92801 0.98088 0.94528 0.90689 0.95330 0.91324 0.87920 0.92325 0.88844 0.88770 0.92814 0.89455 0.92726 0.86709 0.85421 0.93033 0.90434 0.91658 0.84640 0.89402 0.95771 0.86321 0.86786 0.91767 0.86455 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 71.98 0.74 -2.05 16 2 C 0.11 1.72 6.13 86.38 0.53 2.25 16 3 N -0.61 -9.23 2.47 -821.82 -2.03 -11.27 16 4 C 0.10 0.69 5.93 86.38 0.51 1.20 16 5 C -0.17 -0.84 10.24 71.98 0.74 -0.10 16 6 C 0.50 10.40 7.14 87.65 0.63 11.03 16 7 O -0.58 -17.69 14.16 -3.05 -0.04 -17.73 16 8 C -0.14 -1.95 3.85 29.85 0.11 -1.84 16 9 C 0.09 1.82 2.21 44.92 0.10 1.92 16 10 H 0.03 0.76 7.61 -2.38 -0.02 0.74 16 11 C -0.13 -1.97 9.41 71.98 0.68 -1.29 16 12 N -0.68 -18.00 6.17 -495.58 -3.06 -21.05 16 13 C 0.13 3.68 5.61 85.56 0.48 4.16 16 14 C -0.16 -5.61 5.40 -19.83 -0.11 -5.72 16 15 C -0.07 -2.65 9.69 22.25 0.22 -2.44 16 16 C -0.24 -11.70 9.17 22.39 0.21 -11.50 16 17 C 0.12 6.14 6.65 22.58 0.15 6.29 16 18 O -0.23 -14.51 9.76 -22.78 -0.22 -14.74 16 19 C -0.41 -25.34 9.49 67.92 0.64 -24.69 16 20 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 21 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 22 N -0.92 -57.90 13.67 21.61 0.30 -57.61 16 23 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 C -0.20 -9.16 9.99 22.39 0.22 -8.94 16 28 C -0.04 -1.63 9.69 22.25 0.22 -1.41 16 29 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.98 8.07 -2.39 -0.02 0.97 16 33 H 0.06 1.21 7.42 -2.39 -0.02 1.20 16 34 H 0.09 0.46 8.07 -2.39 -0.02 0.44 16 35 H 0.09 0.48 6.44 -2.38 -0.02 0.46 16 36 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.05 0.33 7.22 -2.38 -0.02 0.32 16 39 H 0.11 1.41 7.40 -2.38 -0.02 1.39 16 40 H 0.13 1.06 7.18 -2.39 -0.02 1.04 16 41 H 0.05 0.85 7.45 -2.39 -0.02 0.83 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.33 10.33 6.49 -89.70 -0.58 9.74 16 45 H 0.09 2.22 7.38 -2.39 -0.02 2.20 16 46 H 0.02 0.74 8.00 -2.39 -0.02 0.73 16 47 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 48 H 0.11 5.63 5.64 -2.91 -0.02 5.61 16 49 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 50 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 51 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -79.19 412.49 3.83 -75.37 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.33 Total: 34.39 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 6.53 Total: -33.96 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -4.79 Total: -89.93 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.27 Total: -32.46 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -79.19 3.83 -75.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180546950.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.687 kcal (2) G-P(sol) polarization free energy of solvation -79.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds