Wall clock time and date at job start Tue Mar 31 2020 18:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47037 * 2 1 4 4 C 1.46503 * 119.99933 * 270.00487 * 3 2 1 5 5 C 1.53001 * 109.47007 * 269.99435 * 4 3 2 6 6 C 1.34770 * 119.99777 * 89.99730 * 3 2 1 7 7 O 1.21280 * 119.99931 * 180.02562 * 6 3 2 8 8 C 1.50700 * 120.00305 * 0.02562 * 6 3 2 9 9 C 1.52997 * 109.47332 * 179.97438 * 8 6 3 10 10 H 1.09008 * 109.47126 * 304.99762 * 9 8 6 11 11 C 1.52998 * 109.47398 * 185.00198 * 9 8 6 12 12 N 1.46902 * 109.47176 * 64.99944 * 9 8 6 13 13 C 1.46905 * 110.99757 * 205.00151 * 12 9 8 14 14 C 1.50701 * 109.46928 * 180.02562 * 13 12 9 15 15 C 1.38295 * 119.93297 * 89.99748 * 14 13 12 16 16 C 1.38099 * 120.06865 * 180.25412 * 15 14 13 17 17 C 1.38882 * 119.93206 * 359.47410 * 16 15 14 18 18 O 1.35746 * 120.07145 * 180.25590 * 17 16 15 19 19 C 1.34834 * 117.00340 * 174.73672 * 18 17 16 20 20 H 1.08003 * 119.99155 * 5.05417 * 19 18 17 21 21 C 1.38652 * 120.00189 * 185.05311 * 19 18 17 22 22 N 1.31551 * 120.00092 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99829 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47080 * 90.00176 * 23 21 19 25 25 H 1.48495 * 109.47054 * 209.99795 * 23 21 19 26 26 H 1.48500 * 109.47285 * 330.00378 * 23 21 19 27 27 C 1.38876 * 119.85943 * 0.52538 * 17 16 15 28 28 C 1.38100 * 119.93177 * 359.72571 * 27 17 16 29 29 H 1.08996 * 109.47166 * 299.99759 * 1 2 3 30 30 H 1.09002 * 109.47410 * 60.00195 * 1 2 3 31 31 H 1.09008 * 109.46582 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47111 * 240.00764 * 2 1 3 33 33 H 1.08990 * 109.47290 * 120.00130 * 2 1 3 34 34 H 1.08999 * 109.47517 * 29.99783 * 4 3 2 35 35 H 1.09000 * 109.47232 * 149.99552 * 4 3 2 36 36 H 1.09000 * 109.47029 * 59.99993 * 5 4 3 37 37 H 1.08993 * 109.47083 * 179.97438 * 5 4 3 38 38 H 1.08999 * 109.47266 * 300.00502 * 5 4 3 39 39 H 1.08999 * 109.47163 * 59.99884 * 8 6 3 40 40 H 1.09002 * 109.46900 * 299.99487 * 8 6 3 41 41 H 1.08999 * 109.47231 * 59.99149 * 11 9 8 42 42 H 1.09002 * 109.47625 * 179.97438 * 11 9 8 43 43 H 1.09008 * 109.46625 * 299.99870 * 11 9 8 44 44 H 1.00895 * 111.00197 * 328.95097 * 12 9 8 45 45 H 1.08996 * 109.47200 * 60.00403 * 13 12 9 46 46 H 1.09003 * 109.46980 * 299.99557 * 13 12 9 47 47 H 1.08000 * 119.96836 * 359.97438 * 15 14 13 48 48 H 1.08002 * 120.03655 * 179.72759 * 16 15 14 49 49 H 0.97006 * 120.00187 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.03796 * 179.70626 * 27 17 16 51 51 H 1.07997 * 119.96864 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8316 -1.7105 6 6 2.2429 2.0165 1.1672 7 8 2.6467 3.1601 1.1672 8 6 1.9922 1.3060 2.4723 9 6 2.3240 2.2431 3.6352 10 1 3.3458 2.6076 3.5280 11 6 2.1895 1.4838 4.9566 12 7 1.3949 3.3810 3.6275 13 6 1.9898 4.5508 4.2877 14 6 1.0096 5.6952 4.2610 15 6 0.1090 5.8567 5.2980 16 6 -0.7939 6.9013 5.2738 17 6 -0.7897 7.7965 4.2120 18 8 -1.6726 8.8274 4.1879 19 6 -1.5436 9.7206 3.1862 20 1 -0.8175 9.5538 2.4043 21 6 -2.3431 10.8531 3.1599 22 7 -3.2272 11.0564 4.1126 23 14 -2.1639 12.0909 1.7724 24 1 -3.0769 11.7236 0.6603 25 1 -2.5107 13.4462 2.2703 26 1 -0.7617 12.0869 1.2835 27 6 0.1159 7.6316 3.1722 28 6 1.0129 6.5819 3.1996 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1384 36 1 3.8744 0.7624 -1.8408 37 1 3.8888 2.3450 -2.6546 38 1 4.3882 2.2157 -0.9508 39 1 2.6227 0.4187 2.5299 40 1 0.9443 1.0115 2.5302 41 1 2.8788 0.6394 4.9622 42 1 2.4264 2.1513 5.7851 43 1 1.1678 1.1194 5.0638 44 1 1.1052 3.6049 2.6874 45 1 2.9006 4.8398 3.7634 46 1 2.2291 4.3019 5.3216 47 1 0.1088 5.1626 6.1254 48 1 -1.5000 7.0244 6.0818 49 1 -3.7869 11.8485 4.0940 50 1 0.1185 8.3232 2.3428 51 1 1.7171 6.4529 2.3911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180546973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:50 Heat of formation + Delta-G solvation = -47.533574 kcal Electronic energy + Delta-G solvation = -28770.836331 eV Core-core repulsion = 24863.580392 eV Total energy + Delta-G solvation = -3907.255939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.46204 -38.95451 -37.41709 -36.50148 -35.80798 -32.87259 -32.32551 -31.68241 -30.04608 -29.96720 -28.48504 -27.99536 -25.46599 -24.15185 -23.93119 -23.24268 -21.82189 -20.69842 -20.27554 -19.11491 -17.87865 -17.41609 -16.93577 -16.71036 -16.09906 -15.57355 -14.79722 -14.76716 -14.43784 -14.40577 -14.28847 -14.06609 -13.87644 -13.50537 -13.46955 -13.19368 -13.03336 -12.88328 -12.58199 -12.45267 -12.41324 -12.29338 -12.15182 -12.03748 -11.85352 -11.74231 -11.55448 -11.49707 -11.31195 -11.16626 -10.88617 -10.66065 -10.52765 -10.38490 -10.33778 -9.93199 -9.23295 -9.04302 -8.76254 -8.17824 -8.03264 -7.06469 -6.38058 -3.96512 2.35450 2.40582 2.42214 2.66542 3.17001 3.17979 3.22887 4.02796 4.19071 4.31058 4.46494 4.60532 4.70203 4.76783 4.77219 4.92827 4.97594 5.07359 5.13564 5.16204 5.19171 5.28921 5.37074 5.38666 5.42491 5.44805 5.50956 5.54746 5.64016 5.68164 5.74470 5.78644 5.86286 5.90844 5.93739 6.02218 6.09138 6.20076 6.25222 6.34438 6.56197 6.83726 7.03310 7.05513 7.14530 7.27520 7.40097 7.51074 7.54592 7.68892 7.95354 7.95867 8.07836 9.08000 9.79851 10.80334 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.002503 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.373592 B =11185.073751 C =12553.866000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 N -0.616 5.616 4 C 0.109 3.891 5 C -0.166 4.166 6 C 0.512 3.488 7 O -0.532 6.532 8 C -0.144 4.144 9 C 0.095 3.905 10 H 0.048 0.952 11 C -0.139 4.139 12 N -0.676 5.676 13 C 0.121 3.879 14 C -0.180 4.180 15 C -0.054 4.054 16 C -0.196 4.196 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.235 4.235 28 C -0.063 4.063 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.346 0.654 45 H 0.030 0.970 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.115 0.885 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.740 -25.195 -7.947 28.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 N -0.350 5.350 4 C -0.013 4.013 5 C -0.224 4.224 6 C 0.300 3.700 7 O -0.408 6.408 8 C -0.184 4.184 9 C -0.016 4.016 10 H 0.066 0.934 11 C -0.197 4.197 12 N -0.310 5.310 13 C -0.007 4.007 14 C -0.181 4.181 15 C -0.073 4.073 16 C -0.215 4.215 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.764 3.236 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.254 4.254 28 C -0.082 4.082 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.166 0.834 45 H 0.048 0.952 46 H 0.084 0.916 47 H 0.129 0.871 48 H 0.133 0.867 49 H 0.079 0.921 50 H 0.142 0.858 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.267 -24.543 -7.194 27.947 hybrid contribution 0.668 0.788 -1.597 1.902 sum 11.935 -23.754 -8.791 28.000 Atomic orbital electron populations 1.22240 0.95512 1.02482 1.03078 1.21580 0.94738 0.82312 1.03231 1.48085 1.66382 1.14413 1.06130 1.21416 0.96402 0.98966 0.84562 1.22112 0.97056 1.01534 1.01707 1.20863 0.76783 0.86783 0.85548 1.90733 1.45073 1.17755 1.87282 1.22008 1.04637 0.99908 0.91856 1.21265 0.95652 0.91462 0.93186 0.93421 1.21799 1.01961 0.99276 0.96686 1.60806 1.39609 1.05737 1.24824 1.20592 0.93848 0.87941 0.98329 1.19162 1.02241 0.98960 0.97713 1.20457 0.93845 0.95727 0.97227 1.20206 1.03899 0.98057 0.99355 1.19398 0.88597 0.88959 0.92898 1.83975 1.45918 1.30835 1.47668 1.21320 1.22301 1.00490 1.02526 0.89169 1.25265 0.95646 0.97230 0.98406 1.70041 1.20682 1.27518 1.31801 0.85732 0.78967 0.79178 0.79675 1.19940 1.20292 1.19229 1.21119 1.00786 1.02068 1.01425 1.20645 0.97145 0.93838 0.96542 0.91899 0.92173 0.91339 0.90375 0.90194 0.90708 0.89644 0.92820 0.91590 0.92247 0.88595 0.87939 0.92998 0.92269 0.91900 0.83394 0.95217 0.91563 0.87129 0.86667 0.92128 0.85777 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.10 0.54 5.93 -4.04 -0.02 0.51 16 3 N -0.62 -5.14 2.47 -173.69 -0.43 -5.57 16 4 C 0.11 0.90 6.13 -4.04 -0.02 0.87 16 5 C -0.17 -1.22 10.24 37.16 0.38 -0.84 16 6 C 0.51 5.59 7.14 -10.99 -0.08 5.51 16 7 O -0.53 -7.98 14.16 5.56 0.08 -7.90 16 8 C -0.14 -1.24 3.85 -27.88 -0.11 -1.35 16 9 C 0.09 1.05 2.21 -67.71 -0.15 0.90 16 10 H 0.05 0.59 7.61 -51.92 -0.40 0.20 16 11 C -0.14 -1.28 9.41 37.16 0.35 -0.93 16 12 N -0.68 -9.59 6.17 -107.99 -0.67 -10.26 16 13 C 0.12 1.89 5.61 -4.97 -0.03 1.86 16 14 C -0.18 -3.37 5.40 -104.57 -0.56 -3.93 16 15 C -0.05 -1.04 9.69 -39.61 -0.38 -1.42 16 16 C -0.20 -4.39 9.99 -39.39 -0.39 -4.78 16 17 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 18 O -0.18 -5.35 9.76 0.05 0.00 -5.35 16 19 C -0.39 -11.31 9.49 30.89 0.29 -11.01 16 20 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 23 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 C -0.23 -5.47 9.17 -39.40 -0.36 -5.83 16 28 C -0.06 -1.28 9.69 -39.61 -0.38 -1.66 16 29 H 0.06 0.42 7.22 -51.93 -0.38 0.04 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.08 0.31 6.44 -51.93 -0.33 -0.02 16 34 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 35 H 0.09 0.90 7.42 -51.93 -0.39 0.52 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.58 7.40 -51.93 -0.38 0.19 16 40 H 0.10 0.81 7.19 -51.93 -0.37 0.44 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 43 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.35 5.47 6.49 -39.29 -0.25 5.22 16 45 H 0.03 0.48 8.00 -51.93 -0.42 0.07 16 46 H 0.07 0.95 7.38 -51.93 -0.38 0.57 16 47 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 48 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 49 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.12 2.90 5.64 -52.49 -0.30 2.61 16 51 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 412.50 15.07 6.22 6.22 Total: -1.00 -33.61 412.50 -8.97 -42.58 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -8.46 Total: 7.39 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.45 Total: -17.98 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.34 Total: -41.12 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.61 -8.97 -42.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180546973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.949 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds