Wall clock time and date at job start Tue Mar 31 2020 18:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47037 * 2 1 4 4 C 1.46503 * 119.99933 * 270.00487 * 3 2 1 5 5 C 1.53001 * 109.47007 * 269.99435 * 4 3 2 6 6 C 1.34770 * 119.99777 * 89.99730 * 3 2 1 7 7 O 1.21280 * 119.99931 * 180.02562 * 6 3 2 8 8 C 1.50700 * 120.00305 * 0.02562 * 6 3 2 9 9 C 1.52997 * 109.47332 * 179.97438 * 8 6 3 10 10 H 1.09008 * 109.47126 * 304.99762 * 9 8 6 11 11 C 1.52998 * 109.47398 * 185.00198 * 9 8 6 12 12 N 1.46902 * 109.47176 * 64.99944 * 9 8 6 13 13 C 1.46905 * 110.99757 * 205.00151 * 12 9 8 14 14 C 1.50701 * 109.46928 * 180.02562 * 13 12 9 15 15 C 1.38295 * 119.93297 * 89.99748 * 14 13 12 16 16 C 1.38099 * 120.06865 * 180.25412 * 15 14 13 17 17 C 1.38882 * 119.93206 * 359.47410 * 16 15 14 18 18 O 1.35746 * 120.07145 * 180.25590 * 17 16 15 19 19 C 1.34834 * 117.00340 * 174.73672 * 18 17 16 20 20 H 1.08003 * 119.99155 * 5.05417 * 19 18 17 21 21 C 1.38652 * 120.00189 * 185.05311 * 19 18 17 22 22 N 1.31551 * 120.00092 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99829 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47080 * 90.00176 * 23 21 19 25 25 H 1.48495 * 109.47054 * 209.99795 * 23 21 19 26 26 H 1.48500 * 109.47285 * 330.00378 * 23 21 19 27 27 C 1.38876 * 119.85943 * 0.52538 * 17 16 15 28 28 C 1.38100 * 119.93177 * 359.72571 * 27 17 16 29 29 H 1.08996 * 109.47166 * 299.99759 * 1 2 3 30 30 H 1.09002 * 109.47410 * 60.00195 * 1 2 3 31 31 H 1.09008 * 109.46582 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47111 * 240.00764 * 2 1 3 33 33 H 1.08990 * 109.47290 * 120.00130 * 2 1 3 34 34 H 1.08999 * 109.47517 * 29.99783 * 4 3 2 35 35 H 1.09000 * 109.47232 * 149.99552 * 4 3 2 36 36 H 1.09000 * 109.47029 * 59.99993 * 5 4 3 37 37 H 1.08993 * 109.47083 * 179.97438 * 5 4 3 38 38 H 1.08999 * 109.47266 * 300.00502 * 5 4 3 39 39 H 1.08999 * 109.47163 * 59.99884 * 8 6 3 40 40 H 1.09002 * 109.46900 * 299.99487 * 8 6 3 41 41 H 1.08999 * 109.47231 * 59.99149 * 11 9 8 42 42 H 1.09002 * 109.47625 * 179.97438 * 11 9 8 43 43 H 1.09008 * 109.46625 * 299.99870 * 11 9 8 44 44 H 1.00895 * 111.00197 * 328.95097 * 12 9 8 45 45 H 1.08996 * 109.47200 * 60.00403 * 13 12 9 46 46 H 1.09003 * 109.46980 * 299.99557 * 13 12 9 47 47 H 1.08000 * 119.96836 * 359.97438 * 15 14 13 48 48 H 1.08002 * 120.03655 * 179.72759 * 16 15 14 49 49 H 0.97006 * 120.00187 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.03796 * 179.70626 * 27 17 16 51 51 H 1.07997 * 119.96864 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8316 -1.7105 6 6 2.2429 2.0165 1.1672 7 8 2.6467 3.1601 1.1672 8 6 1.9922 1.3060 2.4723 9 6 2.3240 2.2431 3.6352 10 1 3.3458 2.6076 3.5280 11 6 2.1895 1.4838 4.9566 12 7 1.3949 3.3810 3.6275 13 6 1.9898 4.5508 4.2877 14 6 1.0096 5.6952 4.2610 15 6 0.1090 5.8567 5.2980 16 6 -0.7939 6.9013 5.2738 17 6 -0.7897 7.7965 4.2120 18 8 -1.6726 8.8274 4.1879 19 6 -1.5436 9.7206 3.1862 20 1 -0.8175 9.5538 2.4043 21 6 -2.3431 10.8531 3.1599 22 7 -3.2272 11.0564 4.1126 23 14 -2.1639 12.0909 1.7724 24 1 -3.0769 11.7236 0.6603 25 1 -2.5107 13.4462 2.2703 26 1 -0.7617 12.0869 1.2835 27 6 0.1159 7.6316 3.1722 28 6 1.0129 6.5819 3.1996 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1384 36 1 3.8744 0.7624 -1.8408 37 1 3.8888 2.3450 -2.6546 38 1 4.3882 2.2157 -0.9508 39 1 2.6227 0.4187 2.5299 40 1 0.9443 1.0115 2.5302 41 1 2.8788 0.6394 4.9622 42 1 2.4264 2.1513 5.7851 43 1 1.1678 1.1194 5.0638 44 1 1.1052 3.6049 2.6874 45 1 2.9006 4.8398 3.7634 46 1 2.2291 4.3019 5.3216 47 1 0.1088 5.1626 6.1254 48 1 -1.5000 7.0244 6.0818 49 1 -3.7869 11.8485 4.0940 50 1 0.1185 8.3232 2.3428 51 1 1.7171 6.4529 2.3911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180546973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:49 Heat of formation + Delta-G solvation = -68.717904 kcal Electronic energy + Delta-G solvation = -28771.754952 eV Core-core repulsion = 24863.580392 eV Total energy + Delta-G solvation = -3908.174560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25340 -40.77748 -38.79350 -37.66358 -36.85252 -34.41202 -33.57868 -32.77046 -31.79437 -30.68288 -29.87698 -28.68635 -27.47728 -25.49120 -24.46885 -24.03729 -23.61560 -21.96918 -21.52244 -19.88218 -19.79514 -18.86768 -18.11731 -17.44813 -16.96610 -16.77707 -16.38898 -16.29674 -15.79413 -15.63247 -15.44617 -15.22971 -14.99883 -14.82590 -14.67715 -14.38399 -14.10046 -13.91250 -13.75625 -13.65642 -13.46221 -13.31801 -13.04895 -12.96478 -12.84846 -12.81320 -12.68330 -12.52187 -12.34832 -12.31221 -12.14833 -11.98509 -11.94841 -11.87669 -11.64984 -11.19325 -10.80725 -10.76248 -9.79315 -9.72413 -9.31019 -8.90935 -8.48469 -6.16627 0.58845 0.66996 1.32784 1.42215 1.50590 1.62662 2.03863 2.16557 2.77724 3.10553 3.46597 3.53102 3.54854 3.82258 4.03731 4.05663 4.07250 4.14103 4.20185 4.22105 4.33446 4.45895 4.47292 4.48281 4.52997 4.58597 4.61096 4.71622 4.72965 4.76145 4.79473 4.85027 4.93645 4.99060 5.02109 5.05470 5.08068 5.13750 5.17312 5.23647 5.29302 5.39777 5.48663 5.57713 5.62841 5.69805 5.82452 6.01674 6.15097 6.24561 6.38093 6.48929 6.96099 7.18916 7.76696 8.74844 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.002503 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.373592 B =11185.073751 C =12553.866000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.612 5.612 4 C 0.105 3.895 5 C -0.157 4.157 6 C 0.502 3.498 7 O -0.584 6.584 8 C -0.136 4.136 9 C 0.093 3.907 10 H 0.033 0.967 11 C -0.134 4.134 12 N -0.678 5.678 13 C 0.127 3.873 14 C -0.156 4.156 15 C -0.044 4.044 16 C -0.202 4.202 17 C 0.116 3.884 18 O -0.230 6.230 19 C -0.415 4.415 20 H 0.097 0.903 21 C -0.021 4.021 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.262 1.262 25 H -0.268 1.268 26 H -0.256 1.256 27 C -0.243 4.243 28 C -0.065 4.065 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.335 0.665 45 H 0.024 0.976 46 H 0.087 0.913 47 H 0.150 0.850 48 H 0.117 0.883 49 H 0.273 0.727 50 H 0.114 0.886 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.323 -28.725 -8.681 32.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.344 5.344 4 C -0.018 4.018 5 C -0.216 4.216 6 C 0.292 3.708 7 O -0.464 6.464 8 C -0.175 4.175 9 C -0.017 4.017 10 H 0.051 0.949 11 C -0.191 4.191 12 N -0.311 5.311 13 C -0.002 4.002 14 C -0.157 4.157 15 C -0.062 4.062 16 C -0.221 4.221 17 C 0.065 3.935 18 O -0.137 6.137 19 C -0.492 4.492 20 H 0.115 0.885 21 C -0.219 4.219 22 N -0.558 5.558 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.192 1.192 26 H -0.180 1.180 27 C -0.262 4.262 28 C -0.084 4.084 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.153 0.847 45 H 0.042 0.958 46 H 0.106 0.894 47 H 0.167 0.833 48 H 0.135 0.865 49 H 0.082 0.918 50 H 0.132 0.868 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.874 -28.170 -7.933 31.972 hybrid contribution 0.338 1.549 -1.341 2.077 sum 13.212 -26.620 -9.274 31.132 Atomic orbital electron populations 1.22217 0.95633 1.03384 1.01823 1.21862 0.94543 0.80511 1.05261 1.48220 1.65208 1.15571 1.05437 1.21453 0.97628 0.97410 0.85263 1.22033 0.95667 1.02677 1.01178 1.21350 0.76179 0.86350 0.86933 1.90708 1.47678 1.19992 1.88050 1.22007 1.05962 1.00067 0.89479 1.21386 0.94083 0.90855 0.95420 0.94890 1.21768 1.02826 0.99662 0.94885 1.60847 1.40460 1.05801 1.23970 1.20554 0.92416 0.87420 0.99790 1.19633 1.01301 0.98680 0.96074 1.20837 0.92283 0.94910 0.98217 1.20487 1.04688 0.98298 0.98662 1.19905 0.89520 0.89252 0.94803 1.83938 1.48373 1.32561 1.48829 1.21791 1.23063 1.01256 1.03041 0.88545 1.26572 0.94864 0.99045 1.01408 1.70179 1.22329 1.28765 1.34511 0.84604 0.79605 0.76109 0.75976 1.18676 1.19232 1.17990 1.21161 1.01284 1.02942 1.00801 1.20843 0.96668 0.93211 0.97675 0.93383 0.93218 0.89340 0.88352 0.88205 0.88447 0.92859 0.90932 0.90761 0.94747 0.85183 0.86837 0.90389 0.93061 0.91689 0.84656 0.95785 0.89427 0.83280 0.86460 0.91756 0.86774 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 71.98 0.74 -0.64 16 2 C 0.10 0.69 5.93 86.38 0.51 1.20 16 3 N -0.61 -9.15 2.47 -821.83 -2.03 -11.18 16 4 C 0.11 1.64 6.13 86.38 0.53 2.17 16 5 C -0.16 -2.13 10.24 71.98 0.74 -1.39 16 6 C 0.50 10.34 7.14 87.66 0.63 10.96 16 7 O -0.58 -17.65 14.16 -3.03 -0.04 -17.69 16 8 C -0.14 -1.94 3.85 29.85 0.11 -1.82 16 9 C 0.09 1.81 2.21 44.91 0.10 1.91 16 10 H 0.03 0.76 7.61 -2.38 -0.02 0.74 16 11 C -0.13 -1.96 9.41 71.98 0.68 -1.28 16 12 N -0.68 -17.92 6.17 -495.56 -3.06 -20.98 16 13 C 0.13 3.68 5.61 85.56 0.48 4.16 16 14 C -0.16 -5.62 5.40 -19.83 -0.11 -5.73 16 15 C -0.04 -1.63 9.69 22.25 0.22 -1.41 16 16 C -0.20 -9.19 9.99 22.39 0.22 -8.96 16 17 C 0.12 6.16 6.65 22.58 0.15 6.31 16 18 O -0.23 -14.53 9.76 -22.74 -0.22 -14.75 16 19 C -0.42 -25.37 9.49 67.92 0.64 -24.73 16 20 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 21 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 22 N -0.92 -57.98 13.67 21.61 0.30 -57.68 16 23 Si 1.02 44.58 29.55 68.60 2.03 46.61 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 27 C -0.24 -11.72 9.17 22.39 0.21 -11.52 16 28 C -0.07 -2.66 9.69 22.25 0.22 -2.44 16 29 H 0.05 0.54 7.22 -2.39 -0.02 0.52 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.10 0.34 8.07 -2.39 -0.02 0.32 16 33 H 0.10 0.33 6.44 -2.39 -0.02 0.31 16 34 H 0.10 1.05 8.07 -2.39 -0.02 1.03 16 35 H 0.05 1.18 7.42 -2.39 -0.02 1.16 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.13 0.98 7.40 -2.39 -0.02 0.96 16 40 H 0.11 1.42 7.19 -2.39 -0.02 1.41 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.05 0.84 7.45 -2.39 -0.02 0.82 16 43 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.33 10.28 6.49 -89.70 -0.58 9.70 16 45 H 0.02 0.74 8.00 -2.39 -0.02 0.72 16 46 H 0.09 2.22 7.38 -2.39 -0.02 2.20 16 47 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 48 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 49 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 50 H 0.11 5.63 5.64 -2.91 -0.02 5.62 16 51 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -79.41 412.50 3.83 -75.58 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.33 Total: 34.12 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 6.53 Total: -34.02 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.79 Total: -89.85 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.26 Total: -32.44 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -79.41 3.83 -75.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180546973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.862 kcal (2) G-P(sol) polarization free energy of solvation -79.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds