Wall clock time and date at job start Tue Mar 31 2020 18:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05870 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94246 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05809 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.11012 * 0.04403 * 7 6 5 9 9 C 1.50703 * 119.97092 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47118 * 159.99769 * 9 8 7 11 11 C 1.52995 * 109.47164 * 280.00202 * 9 8 7 12 12 N 1.46902 * 109.46935 * 40.00435 * 9 8 7 13 13 C 1.46897 * 111.00273 * 155.00010 * 12 9 8 14 14 C 1.50693 * 109.47690 * 179.97438 * 13 12 9 15 15 O 1.21290 * 119.99624 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00500 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99769 * 359.97438 * 16 14 13 18 18 C 1.52994 * 109.47033 * 90.00204 * 17 16 14 19 19 C 1.46496 * 120.00164 * 179.97438 * 16 14 13 20 20 C 1.50694 * 109.47188 * 89.99642 * 19 16 14 21 21 H 1.08002 * 120.00350 * 0.02562 * 20 19 16 22 22 C 1.37886 * 120.00081 * 179.97438 * 20 19 16 23 23 N 1.31517 * 119.99534 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47222 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47086 * 120.00304 * 24 22 20 27 27 H 1.48498 * 109.47632 * 240.00434 * 24 22 20 28 28 C 1.38163 * 120.05744 * 359.68064 * 8 7 6 29 29 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 30 30 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 31 31 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 34 34 H 1.08002 * 120.02961 * 0.02562 * 5 4 3 35 35 H 1.08007 * 119.96925 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.94744 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47519 * 60.00220 * 11 9 8 38 38 H 1.09008 * 109.46946 * 179.97438 * 11 9 8 39 39 H 1.08994 * 109.47473 * 299.99894 * 11 9 8 40 40 H 1.00903 * 110.99529 * 278.94810 * 12 9 8 41 41 H 1.09006 * 109.46711 * 299.99919 * 13 12 9 42 42 H 1.09005 * 109.47225 * 59.99432 * 13 12 9 43 43 H 1.09000 * 109.46993 * 210.00631 * 17 16 14 44 44 H 1.08998 * 109.46899 * 329.99816 * 17 16 14 45 45 H 1.09008 * 109.46550 * 180.02562 * 18 17 16 46 46 H 1.09001 * 109.47299 * 299.99605 * 18 17 16 47 47 H 1.08998 * 109.47594 * 60.00038 * 18 17 16 48 48 H 1.09000 * 109.47225 * 209.99705 * 19 16 14 49 49 H 1.09006 * 109.47305 * 329.99468 * 19 16 14 50 50 H 0.96998 * 119.99392 * 179.97438 * 23 22 20 51 51 H 1.07998 * 120.02998 * 180.29532 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8878 0.0022 8 6 5.2551 2.9849 0.0026 9 6 5.8332 4.3767 0.0038 10 1 5.0809 5.0828 -0.3476 11 6 6.2596 4.7506 1.4247 12 7 7.0011 4.4225 -0.8860 13 6 7.2322 5.7859 -1.3818 14 6 8.4357 5.7936 -2.2886 15 8 9.0417 4.7646 -2.5006 16 7 8.8393 6.9440 -2.8631 17 6 8.1076 8.1870 -2.6064 18 6 8.7044 8.8869 -1.3839 19 6 10.0097 6.9515 -3.7442 20 6 9.5724 6.6908 -5.1625 21 1 8.5271 6.5355 -5.3855 22 6 10.5066 6.6516 -6.1759 23 7 11.7794 6.8413 -5.9044 24 14 9.9646 6.3277 -7.9338 25 1 8.4910 6.1483 -7.9725 26 1 10.3451 7.4803 -8.7895 27 1 10.6267 5.0976 -8.4374 28 6 3.8850 2.8066 -0.0043 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7886 -0.5729 -0.0003 35 1 6.2280 -0.2462 0.0012 36 1 7.1669 2.0293 0.0026 37 1 7.0119 4.0444 1.7761 38 1 6.6781 5.7571 1.4255 39 1 5.3930 4.7166 2.0850 40 1 7.8223 4.0619 -0.4236 41 1 6.3567 6.1240 -1.9363 42 1 7.4085 6.4540 -0.5387 43 1 8.1871 8.8413 -3.4746 44 1 7.0585 7.9588 -2.4185 45 1 8.1596 9.8116 -1.1927 46 1 8.6248 8.2327 -0.5157 47 1 9.7535 9.1152 -1.5719 48 1 10.5005 7.9232 -3.6881 49 1 10.7061 6.1741 -3.4299 50 1 12.4366 6.8133 -6.6173 51 1 3.2284 3.6640 -0.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180666757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:37 Heat of formation + Delta-G solvation = -51.697726 kcal Electronic energy + Delta-G solvation = -28467.537991 eV Core-core repulsion = 24560.101481 eV Total energy + Delta-G solvation = -3907.436510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.35652 -39.19408 -38.21660 -36.09717 -35.15668 -32.80918 -32.26300 -31.78257 -30.08427 -29.82401 -29.00348 -27.55493 -25.59539 -24.45322 -23.02067 -22.83008 -22.67841 -21.96867 -20.46564 -18.56085 -17.88431 -16.55635 -16.35660 -16.30100 -16.24667 -16.13774 -15.68628 -14.99945 -14.89536 -14.39085 -14.15862 -13.96243 -13.68021 -13.58084 -13.47329 -13.34186 -13.09207 -12.91235 -12.69121 -12.59085 -12.38714 -12.10337 -11.96623 -11.91994 -11.70741 -11.55727 -11.42196 -11.33699 -11.16678 -10.93947 -10.87122 -10.78477 -10.70007 -10.50398 -10.08846 -9.57160 -8.93094 -8.86473 -8.40121 -8.29107 -8.23818 -7.61045 -6.00826 -4.04815 1.24579 1.42852 2.95749 3.32712 3.40081 3.43397 3.50099 3.64428 3.84560 4.37099 4.49796 4.57034 4.57715 4.65486 4.78946 4.86551 4.93203 4.99493 5.06180 5.14799 5.16862 5.29719 5.33848 5.34246 5.39283 5.41280 5.42029 5.43129 5.61793 5.63208 5.65387 5.71321 5.73885 5.80498 5.92573 5.94883 6.03611 6.21329 6.24239 6.41776 6.47383 6.52428 6.69866 6.94148 7.16608 7.28875 7.42780 7.48557 7.60465 7.96488 8.28046 8.47873 8.95548 9.16647 9.60273 11.07263 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.002336 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.404346 B =11983.238742 C =13072.446306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.125 3.875 5 C -0.214 4.214 6 C -0.081 4.081 7 C -0.130 4.130 8 C -0.025 4.025 9 C 0.122 3.878 10 H 0.088 0.912 11 C -0.179 4.179 12 N -0.663 5.663 13 C 0.042 3.958 14 C 0.504 3.496 15 O -0.528 6.528 16 N -0.599 5.599 17 C 0.107 3.893 18 C -0.168 4.168 19 C 0.247 3.753 20 C -0.522 4.522 21 H 0.058 0.942 22 C 0.059 3.941 23 N -0.896 5.896 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 C -0.148 4.148 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.351 0.649 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.031 0.969 49 H 0.042 0.958 50 H 0.262 0.738 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.780 -7.139 17.505 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.080 3.920 5 C -0.232 4.232 6 C -0.100 4.100 7 C -0.148 4.148 8 C -0.026 4.026 9 C 0.012 3.988 10 H 0.107 0.893 11 C -0.238 4.238 12 N -0.295 5.295 13 C -0.090 4.090 14 C 0.290 3.710 15 O -0.404 6.404 16 N -0.332 5.332 17 C -0.018 4.018 18 C -0.227 4.227 19 C 0.128 3.872 20 C -0.561 4.561 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.535 5.535 24 Si 0.725 3.275 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.209 1.209 28 C -0.167 4.167 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.172 0.828 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.049 0.951 49 H 0.060 0.940 50 H 0.072 0.928 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.756 -7.723 16.721 26.287 hybrid contribution 0.196 0.075 -0.335 0.395 sum -18.560 -7.648 16.386 25.913 Atomic orbital electron populations 1.21776 0.92844 1.02774 1.03527 1.22744 0.95752 0.82186 1.01334 1.86051 1.19270 1.29075 1.88920 1.18865 0.82018 0.94061 0.97047 1.21174 0.94497 0.97724 1.09839 1.20935 0.94194 0.97397 0.97428 1.20890 1.00225 0.91634 1.02061 1.19508 0.91903 0.95046 0.96119 1.20455 0.93755 0.93341 0.91237 0.89350 1.22501 1.02245 1.01816 0.97191 1.60179 1.07359 1.20970 1.41000 1.21935 0.98738 0.90359 0.98016 1.20174 0.85365 0.84031 0.81439 1.90676 1.56258 1.31522 1.61993 1.48246 1.31497 1.06366 1.47086 1.21397 0.94898 0.87310 0.98180 1.22222 1.02232 0.99974 0.98256 1.19247 0.82280 0.97939 0.87742 1.21485 0.94012 1.48646 0.91998 0.92420 1.24945 0.94796 0.95215 0.99284 1.69946 1.00653 1.50094 1.32824 0.86446 0.78825 0.77809 0.84370 1.19781 1.21044 1.20899 1.20182 0.94447 0.94779 1.07309 0.91573 0.91476 0.90453 0.92072 0.92190 0.85936 0.85887 0.85631 0.91976 0.92106 0.91730 0.82827 0.88694 0.92895 0.89965 0.91845 0.92226 0.93257 0.92035 0.95107 0.93962 0.92850 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.42 5.46 37.16 0.20 0.62 16 3 O -0.32 -3.52 10.14 -19.44 -0.20 -3.72 16 4 C 0.12 1.47 6.69 -39.22 -0.26 1.21 16 5 C -0.21 -2.31 9.04 -39.43 -0.36 -2.67 16 6 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 7 C -0.13 -1.59 9.32 -39.56 -0.37 -1.96 16 8 C -0.02 -0.30 4.95 -104.64 -0.52 -0.82 16 9 C 0.12 1.37 2.79 -68.86 -0.19 1.18 16 10 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 11 C -0.18 -1.64 9.14 37.15 0.34 -1.30 16 12 N -0.66 -9.50 5.33 -109.22 -0.58 -10.08 16 13 C 0.04 0.62 4.52 -4.98 -0.02 0.59 16 14 C 0.50 10.44 7.71 -10.99 -0.08 10.35 16 15 O -0.53 -13.37 15.78 5.55 0.09 -13.28 16 16 N -0.60 -12.57 2.46 -175.07 -0.43 -13.00 16 17 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 18 C -0.17 -2.20 10.24 37.15 0.38 -1.82 16 19 C 0.25 6.49 5.16 -5.20 -0.03 6.46 16 20 C -0.52 -15.01 9.39 -34.44 -0.32 -15.34 16 21 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 24 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 C -0.15 -1.76 9.61 -39.43 -0.38 -2.14 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 33 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 34 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.13 1.52 7.24 -52.49 -0.38 1.14 16 37 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 38 H 0.06 0.53 7.45 -51.92 -0.39 0.14 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.35 5.11 7.51 -39.29 -0.30 4.81 16 41 H 0.09 1.31 7.32 -51.93 -0.38 0.93 16 42 H 0.05 0.65 6.48 -51.93 -0.34 0.31 16 43 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 44 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 45 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 46 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 49 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.13 1.34 8.03 -52.49 -0.42 0.92 16 LS Contribution 415.27 15.07 6.26 6.26 Total: -1.00 -34.52 415.27 -9.48 -44.00 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.58 Total: 2.86 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.75 Total: -4.13 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.28 Total: -49.25 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.11 Total: -16.99 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.52 -9.48 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180666757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.696 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds