Wall clock time and date at job start Tue Mar 31 2020 18:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05870 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94246 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05809 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.11012 * 0.04403 * 7 6 5 9 9 C 1.50703 * 119.97092 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47118 * 159.99769 * 9 8 7 11 11 C 1.52995 * 109.47164 * 280.00202 * 9 8 7 12 12 N 1.46902 * 109.46935 * 40.00435 * 9 8 7 13 13 C 1.46897 * 111.00273 * 155.00010 * 12 9 8 14 14 C 1.50693 * 109.47690 * 179.97438 * 13 12 9 15 15 O 1.21290 * 119.99624 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00500 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99769 * 359.97438 * 16 14 13 18 18 C 1.52994 * 109.47033 * 90.00204 * 17 16 14 19 19 C 1.46496 * 120.00164 * 179.97438 * 16 14 13 20 20 C 1.50694 * 109.47188 * 89.99642 * 19 16 14 21 21 H 1.08002 * 120.00350 * 0.02562 * 20 19 16 22 22 C 1.37886 * 120.00081 * 179.97438 * 20 19 16 23 23 N 1.31517 * 119.99534 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47222 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47086 * 120.00304 * 24 22 20 27 27 H 1.48498 * 109.47632 * 240.00434 * 24 22 20 28 28 C 1.38163 * 120.05744 * 359.68064 * 8 7 6 29 29 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 30 30 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 31 31 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 34 34 H 1.08002 * 120.02961 * 0.02562 * 5 4 3 35 35 H 1.08007 * 119.96925 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.94744 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47519 * 60.00220 * 11 9 8 38 38 H 1.09008 * 109.46946 * 179.97438 * 11 9 8 39 39 H 1.08994 * 109.47473 * 299.99894 * 11 9 8 40 40 H 1.00903 * 110.99529 * 278.94810 * 12 9 8 41 41 H 1.09006 * 109.46711 * 299.99919 * 13 12 9 42 42 H 1.09005 * 109.47225 * 59.99432 * 13 12 9 43 43 H 1.09000 * 109.46993 * 210.00631 * 17 16 14 44 44 H 1.08998 * 109.46899 * 329.99816 * 17 16 14 45 45 H 1.09008 * 109.46550 * 180.02562 * 18 17 16 46 46 H 1.09001 * 109.47299 * 299.99605 * 18 17 16 47 47 H 1.08998 * 109.47594 * 60.00038 * 18 17 16 48 48 H 1.09000 * 109.47225 * 209.99705 * 19 16 14 49 49 H 1.09006 * 109.47305 * 329.99468 * 19 16 14 50 50 H 0.96998 * 119.99392 * 179.97438 * 23 22 20 51 51 H 1.07998 * 120.02998 * 180.29532 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8878 0.0022 8 6 5.2551 2.9849 0.0026 9 6 5.8332 4.3767 0.0038 10 1 5.0809 5.0828 -0.3476 11 6 6.2596 4.7506 1.4247 12 7 7.0011 4.4225 -0.8860 13 6 7.2322 5.7859 -1.3818 14 6 8.4357 5.7936 -2.2886 15 8 9.0417 4.7646 -2.5006 16 7 8.8393 6.9440 -2.8631 17 6 8.1076 8.1870 -2.6064 18 6 8.7044 8.8869 -1.3839 19 6 10.0097 6.9515 -3.7442 20 6 9.5724 6.6908 -5.1625 21 1 8.5271 6.5355 -5.3855 22 6 10.5066 6.6516 -6.1759 23 7 11.7794 6.8413 -5.9044 24 14 9.9646 6.3277 -7.9338 25 1 8.4910 6.1483 -7.9725 26 1 10.3451 7.4803 -8.7895 27 1 10.6267 5.0976 -8.4374 28 6 3.8850 2.8066 -0.0043 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7886 -0.5729 -0.0003 35 1 6.2280 -0.2462 0.0012 36 1 7.1669 2.0293 0.0026 37 1 7.0119 4.0444 1.7761 38 1 6.6781 5.7571 1.4255 39 1 5.3930 4.7166 2.0850 40 1 7.8223 4.0619 -0.4236 41 1 6.3567 6.1240 -1.9363 42 1 7.4085 6.4540 -0.5387 43 1 8.1871 8.8413 -3.4746 44 1 7.0585 7.9588 -2.4185 45 1 8.1596 9.8116 -1.1927 46 1 8.6248 8.2327 -0.5157 47 1 9.7535 9.1152 -1.5719 48 1 10.5005 7.9232 -3.6881 49 1 10.7061 6.1741 -3.4299 50 1 12.4366 6.8133 -6.6173 51 1 3.2284 3.6640 -0.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180666757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:36 Heat of formation + Delta-G solvation = -73.423429 kcal Electronic energy + Delta-G solvation = -28468.480088 eV Core-core repulsion = 24560.101481 eV Total energy + Delta-G solvation = -3908.378607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19404 -40.69240 -39.13790 -37.18426 -36.71546 -34.90449 -32.88840 -32.82490 -31.57218 -30.68027 -29.88842 -29.22094 -27.04137 -25.26249 -24.63855 -23.92751 -23.60560 -23.10078 -21.29084 -19.98710 -18.92001 -18.57283 -17.76973 -17.49435 -17.01882 -17.01313 -16.80389 -16.58475 -16.18693 -15.75090 -15.39537 -15.11638 -14.66550 -14.54223 -14.45954 -14.29383 -14.26031 -14.05335 -13.76886 -13.58010 -13.41329 -13.32020 -13.19777 -13.08886 -12.87998 -12.77745 -12.66940 -12.59899 -12.47835 -12.22992 -12.15722 -12.13336 -11.84656 -11.67486 -11.59676 -11.58114 -10.64516 -10.53333 -9.79130 -9.43741 -9.29242 -9.09553 -8.22002 -6.36234 0.38843 0.54780 1.35227 1.38067 1.49872 1.89210 2.21429 2.31824 2.43216 2.82038 3.07117 3.29659 3.74232 3.78431 3.90429 4.06201 4.09419 4.12883 4.18205 4.21303 4.25409 4.34352 4.38585 4.46544 4.47078 4.49587 4.54799 4.65002 4.67040 4.79617 4.88432 4.94719 4.95518 4.99059 5.01322 5.07488 5.10552 5.21139 5.23506 5.24314 5.38339 5.40793 5.54745 5.59320 5.62250 5.86530 5.87893 6.05956 6.08503 6.33861 6.50645 6.72412 6.86338 7.29912 7.55403 8.84951 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.002336 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.404346 B =11983.238742 C =13072.446306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.333 6.333 4 C 0.115 3.885 5 C -0.216 4.216 6 C -0.088 4.088 7 C -0.149 4.149 8 C -0.033 4.033 9 C 0.126 3.874 10 H 0.101 0.899 11 C -0.172 4.172 12 N -0.683 5.683 13 C 0.060 3.940 14 C 0.493 3.507 15 O -0.587 6.587 16 N -0.605 5.605 17 C 0.099 3.901 18 C -0.160 4.160 19 C 0.263 3.737 20 C -0.539 4.539 21 H 0.051 0.949 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.967 3.033 25 H -0.268 1.268 26 H -0.268 1.268 27 H -0.282 1.282 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.346 0.654 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.037 0.963 48 H 0.022 0.978 49 H -0.005 1.005 50 H 0.266 0.734 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.468 -6.757 18.160 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.248 6.248 4 C 0.070 3.930 5 C -0.235 4.235 6 C -0.106 4.106 7 C -0.168 4.168 8 C -0.034 4.034 9 C 0.017 3.983 10 H 0.119 0.881 11 C -0.230 4.230 12 N -0.315 5.315 13 C -0.072 4.072 14 C 0.282 3.718 15 O -0.467 6.467 16 N -0.337 5.337 17 C -0.023 4.023 18 C -0.218 4.218 19 C 0.141 3.859 20 C -0.577 4.577 21 H 0.069 0.931 22 C -0.194 4.194 23 N -0.569 5.569 24 Si 0.791 3.209 25 H -0.193 1.193 26 H -0.193 1.193 27 H -0.208 1.208 28 C -0.179 4.179 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.013 0.987 50 H 0.075 0.925 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.490 -7.299 17.406 28.602 hybrid contribution 1.005 -0.092 -0.503 1.128 sum -20.485 -7.391 16.903 27.567 Atomic orbital electron populations 1.21805 0.91487 1.04136 1.03175 1.23033 0.96878 0.80916 1.02096 1.86041 1.18799 1.31149 1.88799 1.19065 0.82629 0.94381 0.96910 1.21418 0.94251 0.98632 1.09189 1.21189 0.94826 0.97616 0.96990 1.20997 1.00087 0.92500 1.03196 1.19640 0.92078 0.95437 0.96212 1.20500 0.92645 0.93249 0.91879 0.88117 1.22429 1.02596 1.02120 0.95896 1.60137 1.08123 1.20807 1.42467 1.21827 0.95893 0.91620 0.97844 1.21294 0.86357 0.82791 0.81364 1.90641 1.58420 1.33561 1.64079 1.48273 1.30436 1.08769 1.46177 1.21746 0.96469 0.85054 0.99061 1.22147 1.01020 1.01497 0.97121 1.18667 0.83737 0.95501 0.87958 1.21739 0.93740 1.48864 0.93400 0.93094 1.25867 0.94833 0.94798 1.03854 1.70059 1.01751 1.50672 1.34369 0.85377 0.78480 0.78008 0.78996 1.19260 1.19286 1.20824 1.20361 0.94529 0.95427 1.07605 0.91655 0.92074 0.88233 0.91638 0.91031 0.83855 0.84293 0.86355 0.92496 0.91089 0.90552 0.83376 0.86847 0.89377 0.91177 0.88133 0.88630 0.92029 0.94425 0.96049 0.98657 0.92463 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.05 0.61 5.46 71.98 0.39 1.01 16 3 O -0.33 -6.96 10.14 -92.48 -0.94 -7.90 16 4 C 0.12 2.60 6.69 22.51 0.15 2.75 16 5 C -0.22 -4.43 9.04 22.36 0.20 -4.23 16 6 C -0.09 -1.92 10.04 22.25 0.22 -1.70 16 7 C -0.15 -3.65 9.32 22.28 0.21 -3.44 16 8 C -0.03 -0.77 4.95 -19.88 -0.10 -0.87 16 9 C 0.13 2.61 2.79 44.17 0.12 2.74 16 10 H 0.10 1.83 7.66 -2.39 -0.02 1.81 16 11 C -0.17 -2.77 9.14 71.98 0.66 -2.11 16 12 N -0.68 -18.94 5.33 -499.47 -2.66 -21.60 16 13 C 0.06 1.64 4.52 85.56 0.39 2.03 16 14 C 0.49 20.57 7.71 87.66 0.68 21.25 16 15 O -0.59 -30.98 15.78 -3.06 -0.05 -31.03 16 16 N -0.60 -25.65 2.46 -826.18 -2.03 -27.68 16 17 C 0.10 2.96 5.93 86.38 0.51 3.47 16 18 C -0.16 -3.79 10.24 71.98 0.74 -3.05 16 19 C 0.26 14.45 5.16 85.63 0.44 14.89 16 20 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 21 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 22 C 0.01 0.30 5.46 84.66 0.46 0.77 16 23 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 24 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 28 C -0.16 -3.64 9.61 22.37 0.21 -3.43 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 33 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 34 H 0.14 2.20 6.30 -2.91 -0.02 2.19 16 35 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.12 2.98 7.24 -2.91 -0.02 2.96 16 37 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 38 H 0.07 1.00 7.45 -2.38 -0.02 0.99 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.35 10.13 7.51 -89.69 -0.67 9.46 16 41 H 0.11 2.74 7.32 -2.38 -0.02 2.72 16 42 H 0.09 1.83 6.48 -2.38 -0.02 1.81 16 43 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 44 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16 45 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.06 1.31 7.22 -2.39 -0.02 1.30 16 47 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 49 H 0.00 -0.30 7.42 -2.38 -0.02 -0.32 16 50 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.14 2.70 8.03 -2.91 -0.02 2.68 16 Total: -1.00 -78.85 415.27 3.14 -75.71 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.24 Total: 23.48 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 6.27 Total: -2.21 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.41 Total: -106.20 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.99 Total: -38.93 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -78.85 3.14 -75.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180666757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.282 kcal (2) G-P(sol) polarization free energy of solvation -78.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds