Wall clock time and date at job start Tue Mar 31 2020 19:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05870 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94246 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05809 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.11012 * 0.04403 * 7 6 5 9 9 C 1.50703 * 119.97092 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47259 * 200.00317 * 9 8 7 11 11 C 1.53004 * 109.46892 * 79.99984 * 9 8 7 12 12 N 1.46898 * 109.47242 * 320.00469 * 9 8 7 13 13 C 1.46899 * 111.00011 * 204.99944 * 12 9 8 14 14 C 1.53003 * 109.47470 * 179.97438 * 13 12 9 15 15 C 1.50691 * 109.47267 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00567 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00075 * 179.97438 * 15 14 13 18 18 C 1.46493 * 119.99876 * 0.02562 * 17 15 14 19 19 C 1.46495 * 119.99993 * 180.02562 * 17 15 14 20 20 C 1.50697 * 109.47338 * 90.00531 * 19 17 15 21 21 H 1.07999 * 120.00016 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00336 * 179.97438 * 20 19 17 23 23 N 1.31518 * 120.00069 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99857 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47214 * 89.99824 * 24 22 20 26 26 H 1.48503 * 109.46957 * 209.99617 * 24 22 20 27 27 H 1.48501 * 109.47347 * 329.99841 * 24 22 20 28 28 C 1.38163 * 120.05744 * 359.68064 * 8 7 6 29 29 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 30 30 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 31 31 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 34 34 H 1.08002 * 120.02961 * 0.02562 * 5 4 3 35 35 H 1.08007 * 119.96925 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.94744 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.46981 * 300.00016 * 11 9 8 38 38 H 1.08998 * 109.46684 * 60.00364 * 11 9 8 39 39 H 1.08994 * 109.47069 * 179.97438 * 11 9 8 40 40 H 1.00904 * 110.99835 * 328.94709 * 12 9 8 41 41 H 1.09004 * 109.47197 * 300.00267 * 13 12 9 42 42 H 1.09006 * 109.47282 * 59.99484 * 13 12 9 43 43 H 1.09000 * 109.46881 * 299.99814 * 14 13 12 44 44 H 1.08999 * 109.46800 * 59.99420 * 14 13 12 45 45 H 1.09001 * 109.47659 * 89.99856 * 18 17 15 46 46 H 1.09005 * 109.47228 * 209.99735 * 18 17 15 47 47 H 1.09001 * 109.47375 * 329.99524 * 18 17 15 48 48 H 1.09006 * 109.47212 * 210.00027 * 19 17 15 49 49 H 1.09003 * 109.47533 * 330.00003 * 19 17 15 50 50 H 0.96997 * 119.99660 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02998 * 180.29532 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8878 0.0022 8 6 5.2551 2.9849 0.0026 9 6 5.8332 4.3767 0.0038 10 1 5.0806 5.0824 0.3555 11 6 6.2607 4.7525 -1.4164 12 7 7.0005 4.4213 0.8945 13 6 7.2311 5.7840 1.3922 14 6 8.4517 5.7904 2.3148 15 6 8.6885 7.1884 2.8248 16 8 7.9533 8.0910 2.4845 17 7 9.7169 7.4358 3.6601 18 6 10.6048 6.3457 4.0717 19 6 9.9469 8.7948 4.1564 20 6 9.1846 8.9963 5.4407 21 1 8.5881 8.1926 5.8464 22 6 9.2486 10.2068 6.0978 23 7 8.5830 10.3827 7.2183 24 14 10.2808 11.5968 5.3965 25 1 9.4482 12.4190 4.4822 26 1 10.7856 12.4464 6.5049 27 1 11.4293 11.0299 4.6448 28 6 3.8850 2.8066 -0.0043 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7886 -0.5729 -0.0003 35 1 6.2280 -0.2462 0.0012 36 1 7.1669 2.0293 0.0026 37 1 7.0133 4.0468 -1.7680 38 1 5.3946 4.7194 -2.0773 39 1 6.6784 5.7593 -1.4157 40 1 6.8976 3.7700 1.6582 41 1 7.4080 6.4533 0.5502 42 1 6.3553 6.1215 1.9466 43 1 8.2742 5.1213 3.1567 44 1 9.3275 5.4528 1.7607 45 1 11.4335 6.2665 3.3681 46 1 10.9935 6.5506 5.0693 47 1 10.0480 5.4087 4.0843 48 1 11.0117 8.9395 4.3395 49 1 9.6047 9.5157 3.4138 50 1 8.6277 11.2344 7.6804 51 1 3.2284 3.6640 -0.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180714245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:28 Heat of formation + Delta-G solvation = -52.180293 kcal Electronic energy + Delta-G solvation = -27820.574125 eV Core-core repulsion = 23913.116689 eV Total energy + Delta-G solvation = -3907.457436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53453 -39.18200 -38.49618 -36.39125 -34.89563 -32.95027 -32.42991 -32.38567 -30.40277 -29.49572 -28.95516 -27.87932 -25.86563 -24.71880 -23.63261 -22.85717 -22.39401 -21.34560 -20.49137 -18.52192 -18.01428 -16.95641 -16.56891 -16.48504 -16.41694 -16.16415 -15.77714 -15.41996 -15.06420 -14.81739 -14.35371 -13.96485 -13.84029 -13.65494 -13.55703 -13.27026 -13.04768 -12.83462 -12.73399 -12.47724 -12.32163 -12.27455 -12.07508 -12.01394 -11.94852 -11.70261 -11.61162 -11.47655 -11.27052 -11.06953 -11.03582 -10.88197 -10.71774 -10.49758 -10.13083 -9.53381 -9.12377 -8.98160 -8.57952 -8.54289 -8.44220 -7.67792 -6.07827 -4.06470 1.02154 1.21313 2.82126 3.30099 3.36055 3.37846 3.38410 3.47919 3.74245 4.23166 4.38468 4.40633 4.46863 4.47212 4.65073 4.73497 4.84637 4.94940 5.09209 5.12101 5.16238 5.16683 5.24464 5.27200 5.29478 5.33486 5.39890 5.45182 5.58974 5.59744 5.67607 5.69166 5.80781 5.83615 5.87218 6.02138 6.05965 6.10448 6.17502 6.19254 6.20649 6.35801 6.50335 6.71639 6.94756 6.96340 7.12195 7.29110 7.35983 7.62444 8.27454 8.48250 8.93951 9.01129 9.52583 11.05588 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.001829 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.995303 B =15307.752271 C =15827.988714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.128 3.872 5 C -0.212 4.212 6 C -0.082 4.082 7 C -0.137 4.137 8 C -0.048 4.048 9 C 0.123 3.877 10 H 0.056 0.944 11 C -0.135 4.135 12 N -0.684 5.684 13 C 0.074 3.926 14 C -0.135 4.135 15 C 0.507 3.493 16 O -0.544 6.544 17 N -0.599 5.599 18 C 0.084 3.916 19 C 0.215 3.785 20 C -0.528 4.528 21 H 0.074 0.926 22 C 0.071 3.929 23 N -0.898 5.898 24 Si 0.877 3.123 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.266 1.266 28 C -0.146 4.146 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.341 0.659 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -24.487 -17.129 30.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.083 3.917 5 C -0.230 4.230 6 C -0.100 4.100 7 C -0.156 4.156 8 C -0.048 4.048 9 C 0.014 3.986 10 H 0.074 0.926 11 C -0.193 4.193 12 N -0.316 5.316 13 C -0.055 4.055 14 C -0.176 4.176 15 C 0.294 3.706 16 O -0.422 6.422 17 N -0.331 5.331 18 C -0.060 4.060 19 C 0.094 3.906 20 C -0.567 4.567 21 H 0.092 0.908 22 C -0.131 4.131 23 N -0.537 5.537 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.191 1.191 28 C -0.165 4.165 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.160 0.840 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.074 0.926 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.996 -23.648 -17.666 30.581 hybrid contribution -0.139 0.490 0.628 0.809 sum -8.135 -23.157 -17.038 29.879 Atomic orbital electron populations 1.21783 0.92699 1.02865 1.03653 1.22769 0.95916 0.82001 1.01321 1.86078 1.19119 1.29257 1.88712 1.18907 0.82209 0.94010 0.96590 1.21232 0.94560 0.97832 1.09418 1.20966 0.94178 0.97415 0.97464 1.21006 1.00590 0.91378 1.02611 1.19759 0.92129 0.95442 0.97508 1.20429 0.91172 0.91893 0.95106 0.92570 1.21775 1.01287 1.02095 0.94097 1.60639 1.39784 1.08166 1.22961 1.21724 0.96638 0.89067 0.98104 1.21583 1.00182 0.95747 1.00041 1.20318 0.80816 0.90233 0.79270 1.90668 1.45664 1.46995 1.58872 1.47836 1.28705 1.10750 1.45793 1.21660 0.93612 0.89868 1.00875 1.19654 0.96443 0.78998 0.95492 1.21337 1.29554 1.00244 1.05565 0.90835 1.24873 0.95352 0.98208 0.94682 1.69901 1.41960 1.25005 1.16784 0.86830 0.81093 0.82684 0.78955 1.19918 1.21072 1.19067 1.20304 0.94636 0.94985 1.06592 0.91413 0.91491 0.90361 0.92111 0.92054 0.85779 0.85767 0.84785 0.91785 0.92555 0.91977 0.84027 0.90065 0.94040 0.89541 0.88733 0.93634 0.90685 0.92052 0.95280 0.94578 0.92581 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.36 5.46 37.16 0.20 0.56 16 3 O -0.32 -3.16 10.14 -19.44 -0.20 -3.36 16 4 C 0.13 1.31 6.69 -39.22 -0.26 1.05 16 5 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 6 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 7 C -0.14 -1.26 9.00 -39.56 -0.36 -1.62 16 8 C -0.05 -0.48 4.71 -104.64 -0.49 -0.98 16 9 C 0.12 1.30 2.82 -68.86 -0.19 1.10 16 10 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 11 C -0.13 -1.33 9.39 37.16 0.35 -0.98 16 12 N -0.68 -7.48 5.69 -107.94 -0.61 -8.09 16 13 C 0.07 1.01 4.77 -3.82 -0.02 0.99 16 14 C -0.13 -1.91 4.51 -27.89 -0.13 -2.04 16 15 C 0.51 10.27 7.67 -10.99 -0.08 10.18 16 16 O -0.54 -13.39 15.56 5.55 0.09 -13.30 16 17 N -0.60 -12.40 2.86 -182.96 -0.52 -12.92 16 18 C 0.08 1.28 10.24 59.84 0.61 1.89 16 19 C 0.21 5.33 4.23 -5.20 -0.02 5.31 16 20 C -0.53 -15.39 9.94 -34.44 -0.34 -15.73 16 21 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 24 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 28 C -0.15 -1.55 9.61 -39.43 -0.38 -1.93 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 33 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 34 H 0.12 0.82 6.30 -52.49 -0.33 0.49 16 35 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 36 H 0.13 1.15 7.71 -52.49 -0.40 0.74 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 40 H 0.34 3.50 7.99 -39.29 -0.31 3.19 16 41 H 0.08 1.20 7.39 -51.93 -0.38 0.81 16 42 H 0.04 0.65 8.01 -51.93 -0.42 0.23 16 43 H 0.09 1.10 7.40 -51.93 -0.38 0.71 16 44 H 0.09 1.15 8.11 -51.93 -0.42 0.73 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 47 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 48 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 49 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 51 H 0.13 1.31 8.04 -52.49 -0.42 0.89 16 LS Contribution 413.47 15.07 6.23 6.23 Total: -1.00 -34.93 413.47 -9.18 -44.11 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.69 Total: 1.20 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.58 Total: -3.83 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.36 Total: -48.19 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.11 Total: -16.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.93 -9.18 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180714245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.066 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds