Wall clock time and date at job start Tue Mar 31 2020 19:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05870 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94246 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05809 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.11012 * 0.04403 * 7 6 5 9 9 C 1.50703 * 119.97092 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47259 * 200.00317 * 9 8 7 11 11 C 1.53004 * 109.46892 * 79.99984 * 9 8 7 12 12 N 1.46898 * 109.47242 * 320.00469 * 9 8 7 13 13 C 1.46899 * 111.00011 * 204.99944 * 12 9 8 14 14 C 1.53003 * 109.47470 * 179.97438 * 13 12 9 15 15 C 1.50691 * 109.47267 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00567 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00075 * 179.97438 * 15 14 13 18 18 C 1.46493 * 119.99876 * 0.02562 * 17 15 14 19 19 C 1.46495 * 119.99993 * 180.02562 * 17 15 14 20 20 C 1.50697 * 109.47338 * 90.00531 * 19 17 15 21 21 H 1.07999 * 120.00016 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00336 * 179.97438 * 20 19 17 23 23 N 1.31518 * 120.00069 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99857 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47214 * 89.99824 * 24 22 20 26 26 H 1.48503 * 109.46957 * 209.99617 * 24 22 20 27 27 H 1.48501 * 109.47347 * 329.99841 * 24 22 20 28 28 C 1.38163 * 120.05744 * 359.68064 * 8 7 6 29 29 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 30 30 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 31 31 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 34 34 H 1.08002 * 120.02961 * 0.02562 * 5 4 3 35 35 H 1.08007 * 119.96925 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.94744 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.46981 * 300.00016 * 11 9 8 38 38 H 1.08998 * 109.46684 * 60.00364 * 11 9 8 39 39 H 1.08994 * 109.47069 * 179.97438 * 11 9 8 40 40 H 1.00904 * 110.99835 * 328.94709 * 12 9 8 41 41 H 1.09004 * 109.47197 * 300.00267 * 13 12 9 42 42 H 1.09006 * 109.47282 * 59.99484 * 13 12 9 43 43 H 1.09000 * 109.46881 * 299.99814 * 14 13 12 44 44 H 1.08999 * 109.46800 * 59.99420 * 14 13 12 45 45 H 1.09001 * 109.47659 * 89.99856 * 18 17 15 46 46 H 1.09005 * 109.47228 * 209.99735 * 18 17 15 47 47 H 1.09001 * 109.47375 * 329.99524 * 18 17 15 48 48 H 1.09006 * 109.47212 * 210.00027 * 19 17 15 49 49 H 1.09003 * 109.47533 * 330.00003 * 19 17 15 50 50 H 0.96997 * 119.99660 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02998 * 180.29532 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8878 0.0022 8 6 5.2551 2.9849 0.0026 9 6 5.8332 4.3767 0.0038 10 1 5.0806 5.0824 0.3555 11 6 6.2607 4.7525 -1.4164 12 7 7.0005 4.4213 0.8945 13 6 7.2311 5.7840 1.3922 14 6 8.4517 5.7904 2.3148 15 6 8.6885 7.1884 2.8248 16 8 7.9533 8.0910 2.4845 17 7 9.7169 7.4358 3.6601 18 6 10.6048 6.3457 4.0717 19 6 9.9469 8.7948 4.1564 20 6 9.1846 8.9963 5.4407 21 1 8.5881 8.1926 5.8464 22 6 9.2486 10.2068 6.0978 23 7 8.5830 10.3827 7.2183 24 14 10.2808 11.5968 5.3965 25 1 9.4482 12.4190 4.4822 26 1 10.7856 12.4464 6.5049 27 1 11.4293 11.0299 4.6448 28 6 3.8850 2.8066 -0.0043 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7886 -0.5729 -0.0003 35 1 6.2280 -0.2462 0.0012 36 1 7.1669 2.0293 0.0026 37 1 7.0133 4.0468 -1.7680 38 1 5.3946 4.7194 -2.0773 39 1 6.6784 5.7593 -1.4157 40 1 6.8976 3.7700 1.6582 41 1 7.4080 6.4533 0.5502 42 1 6.3553 6.1215 1.9466 43 1 8.2742 5.1213 3.1567 44 1 9.3275 5.4528 1.7607 45 1 11.4335 6.2665 3.3681 46 1 10.9935 6.5506 5.0693 47 1 10.0480 5.4087 4.0843 48 1 11.0117 8.9395 4.3395 49 1 9.6047 9.5157 3.4138 50 1 8.6277 11.2344 7.6804 51 1 3.2284 3.6640 -0.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180714245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:27 Heat of formation + Delta-G solvation = -75.367985 kcal Electronic energy + Delta-G solvation = -27821.579619 eV Core-core repulsion = 23913.116689 eV Total energy + Delta-G solvation = -3908.462930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22942 -40.71607 -39.29388 -37.30132 -36.58146 -34.73830 -33.82111 -32.89944 -31.39597 -30.58864 -29.96010 -29.21730 -27.30435 -25.58286 -24.84464 -23.60847 -23.51424 -22.58449 -21.24571 -19.94510 -19.15780 -18.85059 -17.90445 -17.31892 -17.06288 -17.04055 -16.97137 -16.77421 -16.22777 -16.08656 -15.74408 -15.17072 -14.66189 -14.62851 -14.52760 -14.29057 -14.23067 -13.91862 -13.79085 -13.63049 -13.58938 -13.37214 -13.23332 -13.08915 -12.92415 -12.79913 -12.66671 -12.51862 -12.45419 -12.32780 -12.17772 -12.04728 -11.93397 -11.75395 -11.62018 -11.52751 -10.84308 -10.65891 -9.83252 -9.52404 -9.37317 -9.14069 -8.35186 -6.40329 0.31450 0.50680 1.31957 1.36227 1.44821 1.82135 2.21068 2.30171 2.33319 2.78360 2.99159 3.15573 3.63854 3.84224 3.87474 4.04067 4.05152 4.09028 4.13487 4.19250 4.25929 4.36255 4.40844 4.43865 4.50697 4.51649 4.64985 4.66486 4.69048 4.78259 4.84206 4.86775 4.90000 4.91773 4.95552 5.00382 5.02322 5.05380 5.09870 5.18857 5.33687 5.35594 5.45421 5.52029 5.58536 5.63113 5.84489 5.97790 6.23020 6.39562 6.47956 6.60884 6.72072 7.20628 7.43773 8.81777 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.001829 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.995303 B =15307.752271 C =15827.988714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.339 6.339 4 C 0.114 3.886 5 C -0.212 4.212 6 C -0.079 4.079 7 C -0.140 4.140 8 C -0.053 4.053 9 C 0.124 3.876 10 H 0.040 0.960 11 C -0.130 4.130 12 N -0.667 5.667 13 C 0.083 3.917 14 C -0.117 4.117 15 C 0.495 3.505 16 O -0.600 6.600 17 N -0.608 5.608 18 C 0.077 3.923 19 C 0.222 3.778 20 C -0.537 4.537 21 H 0.027 0.973 22 C 0.008 3.992 23 N -0.946 5.946 24 Si 0.950 3.050 25 H -0.277 1.277 26 H -0.274 1.274 27 H -0.237 1.237 28 C -0.167 4.167 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.348 0.652 41 H 0.068 0.932 42 H 0.013 0.987 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.051 0.949 49 H 0.017 0.983 50 H 0.268 0.732 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -26.985 -18.576 33.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.254 6.254 4 C 0.069 3.931 5 C -0.230 4.230 6 C -0.097 4.097 7 C -0.158 4.158 8 C -0.054 4.054 9 C 0.014 3.986 10 H 0.058 0.942 11 C -0.188 4.188 12 N -0.299 5.299 13 C -0.047 4.047 14 C -0.157 4.157 15 C 0.284 3.716 16 O -0.482 6.482 17 N -0.339 5.339 18 C -0.065 4.065 19 C 0.099 3.901 20 C -0.576 4.576 21 H 0.046 0.954 22 C -0.189 4.189 23 N -0.586 5.586 24 Si 0.773 3.227 25 H -0.203 1.203 26 H -0.199 1.199 27 H -0.160 1.160 28 C -0.187 4.187 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.168 0.832 41 H 0.087 0.913 42 H 0.031 0.969 43 H 0.127 0.873 44 H 0.146 0.854 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.035 0.965 50 H 0.077 0.923 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.881 -26.214 -19.113 32.971 hybrid contribution -0.903 1.146 1.111 1.834 sum -6.784 -25.068 -18.002 31.599 Atomic orbital electron populations 1.21819 0.91836 1.04183 1.02989 1.23045 0.96681 0.80724 1.02340 1.86059 1.19151 1.31446 1.88772 1.19080 0.82705 0.94322 0.96964 1.21519 0.94705 0.98345 1.08443 1.21306 0.94397 0.97942 0.96065 1.21153 1.00878 0.91426 1.02389 1.19675 0.92043 0.95315 0.98358 1.20405 0.90618 0.92245 0.95283 0.94205 1.21733 1.01651 1.01669 0.93741 1.60626 1.39906 1.06490 1.22866 1.21521 0.95574 0.90334 0.97269 1.21520 1.01463 0.91764 1.00921 1.21409 0.79622 0.92114 0.78450 1.90637 1.47461 1.49251 1.60828 1.47980 1.29814 1.10519 1.45630 1.21989 0.94197 0.89197 1.01130 1.19328 0.96540 0.81508 0.92690 1.21584 1.29428 0.99242 1.07328 0.95433 1.25894 0.96819 1.01315 0.94913 1.70055 1.43926 1.26089 1.18508 0.85683 0.79915 0.78665 0.78482 1.20323 1.19900 1.15989 1.20375 0.95013 0.95317 1.07957 0.92244 0.91985 0.88020 0.90837 0.91130 0.83604 0.82994 0.83821 0.91060 0.92020 0.92873 0.83243 0.91314 0.96857 0.87318 0.85350 0.90084 0.91805 0.88955 0.93135 0.96466 0.92274 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.05 0.54 5.46 71.98 0.39 0.94 16 3 O -0.34 -6.73 10.14 -92.48 -0.94 -7.67 16 4 C 0.11 2.29 6.69 22.51 0.15 2.44 16 5 C -0.21 -3.24 9.04 22.36 0.20 -3.04 16 6 C -0.08 -1.10 10.04 22.25 0.22 -0.87 16 7 C -0.14 -2.27 9.00 22.28 0.20 -2.07 16 8 C -0.05 -1.05 4.71 -19.88 -0.09 -1.14 16 9 C 0.12 2.59 2.82 44.17 0.12 2.72 16 10 H 0.04 0.96 7.66 -2.39 -0.02 0.95 16 11 C -0.13 -2.50 9.39 71.98 0.68 -1.83 16 12 N -0.67 -13.73 5.69 -495.42 -2.82 -16.55 16 13 C 0.08 2.25 4.77 86.30 0.41 2.66 16 14 C -0.12 -3.07 4.51 29.85 0.13 -2.93 16 15 C 0.49 19.90 7.67 87.65 0.67 20.57 16 16 O -0.60 -30.49 15.56 -3.04 -0.05 -30.54 16 17 N -0.61 -24.60 2.86 -851.15 -2.43 -27.03 16 18 C 0.08 2.12 10.24 127.77 1.31 3.43 16 19 C 0.22 10.96 4.23 85.63 0.36 11.32 16 20 C -0.54 -32.16 9.94 25.60 0.25 -31.91 16 21 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 22 C 0.01 0.51 5.47 84.65 0.46 0.97 16 23 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 24 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 28 C -0.17 -3.62 9.61 22.37 0.21 -3.40 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 33 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 34 H 0.15 1.51 6.30 -2.91 -0.02 1.49 16 35 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.14 2.02 7.71 -2.91 -0.02 2.00 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.11 7.45 -2.39 -0.02 1.09 16 40 H 0.35 6.48 7.99 -89.69 -0.72 5.76 16 41 H 0.07 2.05 7.39 -2.39 -0.02 2.04 16 42 H 0.01 0.43 8.01 -2.38 -0.02 0.41 16 43 H 0.11 2.43 7.40 -2.39 -0.02 2.41 16 44 H 0.13 2.59 8.11 -2.39 -0.02 2.57 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.06 1.91 8.07 -2.38 -0.02 1.89 16 47 H 0.09 1.96 6.44 -2.39 -0.02 1.95 16 48 H 0.05 2.28 7.13 -2.38 -0.02 2.26 16 49 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 50 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 51 H 0.12 2.66 8.04 -2.91 -0.02 2.63 16 Total: -1.00 -80.62 413.47 2.52 -78.10 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.14 Total: 19.78 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 6.44 Total: -2.76 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -4.95 Total: -103.88 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.98 Total: -38.21 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -80.62 2.52 -78.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180714245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.730 kcal (2) G-P(sol) polarization free energy of solvation -80.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds