Wall clock time and date at job start Tue Mar 31 2020 19:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47242 * 2 1 4 4 C 1.35899 * 117.00200 * 180.02562 * 3 2 1 5 5 C 1.38748 * 120.05524 * 359.97438 * 4 3 2 6 6 C 1.38118 * 119.94535 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.05414 * 359.97438 * 6 5 4 8 8 C 1.38236 * 120.11364 * 0.02562 * 7 6 5 9 9 C 1.38173 * 120.05472 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.02538 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.46851 * 220.01909 * 10 9 8 12 12 C 1.53002 * 109.47154 * 100.02167 * 10 9 8 13 13 C 1.53008 * 109.47056 * 68.04886 * 12 10 9 14 14 C 1.52996 * 109.46802 * 65.91854 * 13 12 10 15 15 C 1.52997 * 109.46916 * 185.92085 * 13 12 10 16 16 N 1.46897 * 109.47399 * 340.01997 * 10 9 8 17 17 C 1.46900 * 110.99963 * 201.67418 * 16 10 9 18 18 C 1.50700 * 109.47206 * 183.92383 * 17 16 10 19 19 O 1.21293 * 120.00033 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00454 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00509 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99837 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00137 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00393 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00013 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46947 * 60.00363 * 25 23 21 27 27 H 1.48503 * 109.47402 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47121 * 300.00043 * 25 23 21 29 29 H 1.09002 * 109.46919 * 300.00010 * 1 2 3 30 30 H 1.09000 * 109.47567 * 59.99997 * 1 2 3 31 31 H 1.08997 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46919 * 239.99989 * 2 1 3 33 33 H 1.08996 * 109.47085 * 120.00018 * 2 1 3 34 34 H 1.08009 * 120.02648 * 359.95871 * 5 4 3 35 35 H 1.08006 * 119.97627 * 179.72605 * 6 5 4 36 36 H 1.08000 * 119.94282 * 179.97438 * 7 6 5 37 37 H 1.08006 * 119.97446 * 179.97438 * 8 7 6 38 38 H 1.09006 * 109.47262 * 188.04644 * 12 10 9 39 39 H 1.08995 * 109.47209 * 308.04696 * 12 10 9 40 40 H 1.08994 * 109.46829 * 305.92101 * 13 12 10 41 41 H 1.09011 * 109.46982 * 176.71341 * 14 13 12 42 42 H 1.08995 * 109.47578 * 296.71245 * 14 13 12 43 43 H 1.09004 * 109.47592 * 56.71769 * 14 13 12 44 44 H 1.08994 * 109.47445 * 59.99628 * 15 13 12 45 45 H 1.09003 * 109.47222 * 180.02562 * 15 13 12 46 46 H 1.09002 * 109.46814 * 299.99826 * 15 13 12 47 47 H 1.00900 * 111.00016 * 325.62923 * 16 10 9 48 48 H 1.09006 * 109.47342 * 303.92117 * 17 16 10 49 49 H 1.08999 * 109.47555 * 63.92342 * 17 16 10 50 50 H 0.97000 * 119.99330 * 0.02562 * 20 18 17 51 51 H 0.96997 * 120.00278 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0005 6 6 5.5688 0.6094 -0.0016 7 6 6.0961 1.8879 -0.0032 8 6 5.2551 2.9850 -0.0033 9 6 3.8850 2.8066 -0.0011 10 6 2.9688 4.0031 -0.0006 11 1 2.1240 3.8135 0.6617 12 6 2.4573 4.2545 -1.4205 13 6 1.5250 3.1146 -1.8360 14 6 0.2682 3.1401 -0.9639 15 6 1.1308 3.2877 -3.3041 16 7 3.7052 5.1835 0.4708 17 6 2.7846 6.2128 0.9719 18 6 3.5667 7.4424 1.3558 19 8 4.7725 7.4595 1.2253 20 7 2.9265 8.5232 1.8442 21 6 3.6381 9.6416 2.1939 22 1 4.7117 9.6568 2.0777 23 6 2.9781 10.7556 2.6979 24 7 1.6717 10.7370 2.8398 25 14 3.9476 12.2797 3.1738 26 1 4.6698 12.7983 1.9843 27 1 3.0170 13.3205 3.6798 28 1 4.9267 11.9323 4.2349 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7885 -0.5728 0.0006 35 1 6.2280 -0.2461 0.0029 36 1 7.1668 2.0294 -0.0037 37 1 5.6694 3.9824 -0.0041 38 1 1.9124 5.1981 -1.4487 39 1 3.3019 4.3020 -2.1078 40 1 2.0373 2.1611 -1.7073 41 1 -0.4217 2.3650 -1.2980 42 1 0.5431 2.9586 0.0751 43 1 -0.2125 4.1149 -1.0476 44 1 2.0262 3.2696 -3.9254 45 1 0.4663 2.4759 -3.6001 46 1 0.6186 4.2412 -3.4328 47 1 4.3821 4.9301 1.1748 48 1 2.0659 6.4679 0.1930 49 1 2.2544 5.8322 1.8449 50 1 1.9623 8.5094 1.9489 51 1 1.2109 11.5148 3.1913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181265005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:22 Heat of formation + Delta-G solvation = -55.891912 kcal Electronic energy + Delta-G solvation = -29864.127564 eV Core-core repulsion = 25956.509180 eV Total energy + Delta-G solvation = -3907.618384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74132 -38.38764 -37.69760 -36.95041 -34.63880 -33.75993 -32.30272 -31.29729 -30.95636 -29.76281 -28.13121 -27.10705 -26.32537 -24.30463 -24.24933 -22.73419 -21.74991 -20.89226 -19.53013 -19.14366 -18.21172 -17.79343 -16.63035 -16.42185 -16.19866 -15.42365 -15.25143 -14.85953 -14.53070 -14.41772 -14.24659 -13.91198 -13.73229 -13.69070 -13.61689 -13.34212 -12.96462 -12.81129 -12.50648 -12.28480 -12.22422 -12.09398 -12.03672 -11.63075 -11.57350 -11.50174 -11.46595 -11.15518 -11.04837 -10.95870 -10.67490 -10.57610 -10.40807 -10.34818 -10.16866 -10.07942 -9.44747 -8.88020 -8.40562 -8.16507 -7.95177 -7.89257 -6.36681 -3.77300 1.28903 1.40427 3.04335 3.23535 3.28643 3.33256 3.72310 3.97829 4.12332 4.34386 4.59919 4.63990 4.71851 4.85909 4.95497 5.00231 5.07660 5.10420 5.12792 5.20373 5.26800 5.30161 5.35123 5.42410 5.47798 5.50007 5.68315 5.72941 5.77594 5.79354 5.88250 5.89172 5.96864 5.98145 6.01948 6.05004 6.12825 6.20493 6.24644 6.34137 6.39624 6.41187 6.52990 6.60906 6.64415 6.79139 7.30811 7.35795 7.59667 7.74812 8.11761 8.67369 9.23186 9.60455 10.12430 10.81171 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.002754 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.470019 B =10164.825097 C =11120.634869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.297 6.297 4 C 0.130 3.870 5 C -0.212 4.212 6 C -0.088 4.088 7 C -0.156 4.156 8 C -0.069 4.069 9 C -0.110 4.110 10 C 0.134 3.866 11 H 0.056 0.944 12 C -0.095 4.095 13 C -0.101 4.101 14 C -0.139 4.139 15 C -0.146 4.146 16 N -0.664 5.664 17 C 0.051 3.949 18 C 0.444 3.556 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.349 0.651 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 -24.139 -7.399 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.211 6.211 4 C 0.085 3.915 5 C -0.231 4.231 6 C -0.106 4.106 7 C -0.175 4.175 8 C -0.087 4.087 9 C -0.112 4.112 10 C 0.025 3.975 11 H 0.074 0.926 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.196 4.196 15 C -0.203 4.203 16 N -0.297 5.297 17 C -0.081 4.081 18 C 0.229 3.771 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.169 0.831 48 H 0.104 0.896 49 H 0.060 0.940 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.498 -23.535 -8.022 24.990 hybrid contribution -0.372 0.123 1.161 1.225 sum -2.870 -23.412 -6.862 24.565 Atomic orbital electron populations 1.21874 0.92853 1.02585 1.03823 1.22725 0.95879 0.82761 1.01050 1.86365 1.18567 1.28118 1.88085 1.18712 0.82560 0.93351 0.96872 1.21127 0.94409 0.97623 1.09929 1.20905 0.94271 0.97271 0.98165 1.21098 0.99998 0.92378 1.03985 1.21141 0.91745 1.00176 0.95602 1.19316 0.94305 0.91827 1.05703 1.20331 0.93470 0.86555 0.97164 0.92584 1.21590 0.98682 0.98104 0.94935 1.21330 0.96501 1.00012 0.94107 1.21921 0.96764 1.00382 1.00538 1.21850 1.00779 1.01176 0.96544 1.60170 1.16388 1.09211 1.43950 1.21694 0.95019 0.92607 0.98820 1.19816 0.88495 0.84868 0.83921 1.90512 1.14343 1.83151 1.58602 1.41855 1.09875 1.12302 1.56187 1.19647 0.93701 0.90541 1.38893 0.88015 1.25245 0.95755 0.99422 0.97538 1.69607 1.07244 1.31465 1.46153 0.85932 0.78885 0.80441 0.79034 1.19911 1.21021 1.19953 0.91482 0.91076 0.90830 0.92308 0.92400 0.85891 0.86253 0.85962 0.83710 0.91664 0.91648 0.89656 0.93537 0.91712 0.93692 0.93162 0.93374 0.92976 0.83092 0.89564 0.93960 0.77499 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.88 37.16 0.37 -0.58 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.30 -3.05 4.07 -19.42 -0.08 -3.13 16 4 C 0.13 1.51 5.53 -39.22 -0.22 1.29 16 5 C -0.21 -2.16 9.04 -39.44 -0.36 -2.51 16 6 C -0.09 -0.88 10.04 -39.61 -0.40 -1.28 16 7 C -0.16 -1.75 10.04 -39.56 -0.40 -2.15 16 8 C -0.07 -0.89 8.89 -39.61 -0.35 -1.25 16 9 C -0.11 -1.45 4.89 -104.47 -0.51 -1.96 16 10 C 0.13 1.88 2.06 -68.87 -0.14 1.74 16 11 H 0.06 0.80 5.84 -51.93 -0.30 0.50 16 12 C -0.10 -1.27 4.35 -26.73 -0.12 -1.39 16 13 C -0.10 -1.13 2.35 -90.62 -0.21 -1.34 16 14 C -0.14 -1.47 7.49 37.16 0.28 -1.19 16 15 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 16 N -0.66 -11.20 5.07 -109.22 -0.55 -11.75 16 17 C 0.05 0.94 5.95 -4.98 -0.03 0.91 16 18 C 0.44 10.70 7.83 -10.98 -0.09 10.61 16 19 O -0.58 -16.00 15.86 5.55 0.09 -15.91 16 20 N -0.57 -14.62 5.29 -10.97 -0.06 -14.68 16 21 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 25 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 6.24 -51.93 -0.32 0.14 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 33 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 34 H 0.12 0.98 6.30 -52.48 -0.33 0.65 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.15 2.05 6.77 -52.48 -0.36 1.69 16 38 H 0.06 0.93 7.03 -51.93 -0.37 0.56 16 39 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 40 H 0.09 0.99 4.46 -51.93 -0.23 0.76 16 41 H 0.05 0.43 6.32 -51.92 -0.33 0.10 16 42 H 0.06 0.73 5.14 -51.93 -0.27 0.47 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.35 6.05 7.03 -39.29 -0.28 5.77 16 48 H 0.09 1.49 7.03 -51.93 -0.37 1.12 16 49 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 50 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 51 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -31.23 394.49 -8.83 -40.06 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -8.00 Total: 15.11 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.87 Total: -7.78 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.11 Total: -50.65 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.01 Total: -19.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.23 -8.83 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181265005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.834 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds