Wall clock time and date at job start Tue Mar 31 2020 19:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47242 * 2 1 4 4 C 1.35899 * 117.00200 * 180.02562 * 3 2 1 5 5 C 1.38748 * 120.05524 * 359.97438 * 4 3 2 6 6 C 1.38118 * 119.94535 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.05414 * 359.97438 * 6 5 4 8 8 C 1.38236 * 120.11364 * 0.02562 * 7 6 5 9 9 C 1.38173 * 120.05472 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.02538 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.46851 * 220.01909 * 10 9 8 12 12 C 1.53002 * 109.47154 * 100.02167 * 10 9 8 13 13 C 1.53008 * 109.47056 * 68.04886 * 12 10 9 14 14 C 1.52996 * 109.46802 * 65.91854 * 13 12 10 15 15 C 1.52997 * 109.46916 * 185.92085 * 13 12 10 16 16 N 1.46897 * 109.47399 * 340.01997 * 10 9 8 17 17 C 1.46900 * 110.99963 * 201.67418 * 16 10 9 18 18 C 1.50700 * 109.47206 * 183.92383 * 17 16 10 19 19 O 1.21293 * 120.00033 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00454 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00509 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99837 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00137 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00393 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00013 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46947 * 60.00363 * 25 23 21 27 27 H 1.48503 * 109.47402 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47121 * 300.00043 * 25 23 21 29 29 H 1.09002 * 109.46919 * 300.00010 * 1 2 3 30 30 H 1.09000 * 109.47567 * 59.99997 * 1 2 3 31 31 H 1.08997 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46919 * 239.99989 * 2 1 3 33 33 H 1.08996 * 109.47085 * 120.00018 * 2 1 3 34 34 H 1.08009 * 120.02648 * 359.95871 * 5 4 3 35 35 H 1.08006 * 119.97627 * 179.72605 * 6 5 4 36 36 H 1.08000 * 119.94282 * 179.97438 * 7 6 5 37 37 H 1.08006 * 119.97446 * 179.97438 * 8 7 6 38 38 H 1.09006 * 109.47262 * 188.04644 * 12 10 9 39 39 H 1.08995 * 109.47209 * 308.04696 * 12 10 9 40 40 H 1.08994 * 109.46829 * 305.92101 * 13 12 10 41 41 H 1.09011 * 109.46982 * 176.71341 * 14 13 12 42 42 H 1.08995 * 109.47578 * 296.71245 * 14 13 12 43 43 H 1.09004 * 109.47592 * 56.71769 * 14 13 12 44 44 H 1.08994 * 109.47445 * 59.99628 * 15 13 12 45 45 H 1.09003 * 109.47222 * 180.02562 * 15 13 12 46 46 H 1.09002 * 109.46814 * 299.99826 * 15 13 12 47 47 H 1.00900 * 111.00016 * 325.62923 * 16 10 9 48 48 H 1.09006 * 109.47342 * 303.92117 * 17 16 10 49 49 H 1.08999 * 109.47555 * 63.92342 * 17 16 10 50 50 H 0.97000 * 119.99330 * 0.02562 * 20 18 17 51 51 H 0.96997 * 120.00278 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0005 6 6 5.5688 0.6094 -0.0016 7 6 6.0961 1.8879 -0.0032 8 6 5.2551 2.9850 -0.0033 9 6 3.8850 2.8066 -0.0011 10 6 2.9688 4.0031 -0.0006 11 1 2.1240 3.8135 0.6617 12 6 2.4573 4.2545 -1.4205 13 6 1.5250 3.1146 -1.8360 14 6 0.2682 3.1401 -0.9639 15 6 1.1308 3.2877 -3.3041 16 7 3.7052 5.1835 0.4708 17 6 2.7846 6.2128 0.9719 18 6 3.5667 7.4424 1.3558 19 8 4.7725 7.4595 1.2253 20 7 2.9265 8.5232 1.8442 21 6 3.6381 9.6416 2.1939 22 1 4.7117 9.6568 2.0777 23 6 2.9781 10.7556 2.6979 24 7 1.6717 10.7370 2.8398 25 14 3.9476 12.2797 3.1738 26 1 4.6698 12.7983 1.9843 27 1 3.0170 13.3205 3.6798 28 1 4.9267 11.9323 4.2349 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7885 -0.5728 0.0006 35 1 6.2280 -0.2461 0.0029 36 1 7.1668 2.0294 -0.0037 37 1 5.6694 3.9824 -0.0041 38 1 1.9124 5.1981 -1.4487 39 1 3.3019 4.3020 -2.1078 40 1 2.0373 2.1611 -1.7073 41 1 -0.4217 2.3650 -1.2980 42 1 0.5431 2.9586 0.0751 43 1 -0.2125 4.1149 -1.0476 44 1 2.0262 3.2696 -3.9254 45 1 0.4663 2.4759 -3.6001 46 1 0.6186 4.2412 -3.4328 47 1 4.3821 4.9301 1.1748 48 1 2.0659 6.4679 0.1930 49 1 2.2544 5.8322 1.8449 50 1 1.9623 8.5094 1.9489 51 1 1.2109 11.5148 3.1913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181265005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:21 Heat of formation + Delta-G solvation = -74.392072 kcal Electronic energy + Delta-G solvation = -29864.929791 eV Core-core repulsion = 25956.509180 eV Total energy + Delta-G solvation = -3908.420611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.60458 -40.14710 -38.71087 -37.97240 -36.11567 -35.51614 -33.30883 -32.97761 -32.04909 -30.60386 -29.20281 -28.03393 -27.85481 -26.01223 -25.00094 -23.77735 -22.53411 -21.84203 -21.12711 -20.39882 -19.90847 -19.00510 -17.91457 -17.41201 -17.18516 -16.90559 -16.41570 -16.27966 -15.92705 -15.72208 -15.35092 -15.23021 -15.02762 -14.72096 -14.60850 -14.32125 -14.05746 -13.93462 -13.52250 -13.48250 -13.36240 -13.29968 -12.97229 -12.93194 -12.86700 -12.69002 -12.43462 -12.43271 -12.32929 -12.12671 -12.08518 -11.75875 -11.51941 -11.48952 -11.44470 -11.34308 -10.99784 -10.35298 -10.01579 -9.76348 -9.35505 -8.99203 -8.46227 -5.95227 0.41273 0.54763 1.39745 1.41179 1.52469 2.04887 2.28909 2.34613 2.83775 2.88107 3.20526 3.48816 3.69622 3.98765 4.11395 4.13739 4.16305 4.18228 4.23376 4.27113 4.32809 4.35656 4.43603 4.45713 4.50006 4.55168 4.60789 4.75239 4.77877 4.87134 4.93884 4.99205 5.00395 5.03801 5.08320 5.13943 5.21512 5.23284 5.32538 5.37368 5.40673 5.48483 5.50878 5.64539 5.66336 5.71658 5.91451 5.95047 6.13973 6.37341 6.56296 6.60341 7.12398 7.55833 8.11271 8.71149 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.002754 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.470019 B =10164.825097 C =11120.634869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.307 6.307 4 C 0.129 3.871 5 C -0.210 4.210 6 C -0.083 4.083 7 C -0.165 4.165 8 C -0.086 4.086 9 C -0.131 4.131 10 C 0.143 3.857 11 H 0.056 0.944 12 C -0.091 4.091 13 C -0.093 4.093 14 C -0.134 4.134 15 C -0.144 4.144 16 N -0.674 5.674 17 C 0.067 3.933 18 C 0.441 3.559 19 O -0.620 6.620 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.344 0.656 48 H 0.100 0.900 49 H 0.061 0.939 50 H 0.396 0.604 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -26.236 -7.554 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 O -0.221 6.221 4 C 0.083 3.917 5 C -0.229 4.229 6 C -0.101 4.101 7 C -0.183 4.183 8 C -0.105 4.105 9 C -0.132 4.132 10 C 0.034 3.966 11 H 0.073 0.927 12 C -0.130 4.130 13 C -0.112 4.112 14 C -0.191 4.191 15 C -0.202 4.202 16 N -0.307 5.307 17 C -0.066 4.066 18 C 0.228 3.772 19 O -0.506 6.506 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.196 1.196 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.163 0.837 48 H 0.118 0.882 49 H 0.079 0.921 50 H 0.229 0.771 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.368 -25.652 -8.185 27.136 hybrid contribution -0.121 0.674 1.190 1.372 sum -3.490 -24.978 -6.995 26.173 Atomic orbital electron populations 1.21886 0.91969 1.03786 1.03212 1.22996 0.96591 0.81519 1.02064 1.86353 1.17779 1.30124 1.87823 1.18737 0.83455 0.93018 0.96461 1.21462 0.94349 0.98400 1.08676 1.21265 0.94826 0.97524 0.96498 1.21291 1.00525 0.92534 1.03981 1.21046 0.92293 0.99920 0.97220 1.19246 0.94114 0.92202 1.07650 1.20279 0.93357 0.85912 0.97073 0.92665 1.21567 0.98458 0.98561 0.94374 1.21264 0.96210 0.98893 0.94804 1.21867 0.96621 1.00591 0.99977 1.21837 1.00952 1.01634 0.95765 1.60175 1.16526 1.10311 1.43639 1.21522 0.94527 0.90559 0.99970 1.20770 0.88407 0.85797 0.82220 1.90479 1.16315 1.84041 1.59764 1.41916 1.09954 1.12444 1.56714 1.19641 0.93147 0.92374 1.41240 0.90293 1.26050 0.96791 1.01742 0.96676 1.69672 1.08205 1.32468 1.45852 0.84988 0.77777 0.76897 0.78666 1.19730 1.19398 1.19621 0.92299 0.91424 0.88743 0.91030 0.91526 0.83183 0.83300 0.84740 0.85942 0.92974 0.93157 0.89503 0.91783 0.92436 0.94409 0.93469 0.91687 0.93394 0.83665 0.88189 0.92080 0.77059 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.88 71.98 0.71 -0.75 16 2 C 0.04 0.51 5.46 71.98 0.39 0.90 16 3 O -0.31 -5.73 4.07 -92.42 -0.38 -6.11 16 4 C 0.13 2.81 5.53 22.50 0.12 2.93 16 5 C -0.21 -3.72 9.04 22.36 0.20 -3.52 16 6 C -0.08 -1.47 10.04 22.25 0.22 -1.25 16 7 C -0.17 -3.59 10.04 22.28 0.22 -3.37 16 8 C -0.09 -2.33 8.89 22.25 0.20 -2.13 16 9 C -0.13 -3.45 4.89 -19.77 -0.10 -3.55 16 10 C 0.14 4.07 2.06 44.17 0.09 4.16 16 11 H 0.06 1.58 5.84 -2.38 -0.01 1.57 16 12 C -0.09 -2.49 4.35 30.60 0.13 -2.35 16 13 C -0.09 -2.01 2.35 -10.79 -0.03 -2.03 16 14 C -0.13 -2.66 7.49 71.98 0.54 -2.12 16 15 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 16 N -0.67 -23.58 5.07 -499.46 -2.53 -26.11 16 17 C 0.07 2.50 5.95 85.56 0.51 3.01 16 18 C 0.44 21.98 7.83 87.66 0.69 22.67 16 19 O -0.62 -35.55 15.86 -3.07 -0.05 -35.60 16 20 N -0.57 -30.51 5.29 -306.99 -1.62 -32.13 16 21 C -0.33 -19.51 9.68 84.04 0.81 -18.69 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 24 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 25 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.70 6.24 -2.39 -0.01 0.69 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 33 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 34 H 0.15 1.79 6.30 -2.91 -0.02 1.77 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.12 3.76 6.77 -2.91 -0.02 3.74 16 38 H 0.05 1.52 7.03 -2.38 -0.02 1.50 16 39 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 40 H 0.09 1.89 4.46 -2.39 -0.01 1.88 16 41 H 0.06 1.04 6.32 -2.38 -0.02 1.03 16 42 H 0.06 1.24 5.14 -2.39 -0.01 1.23 16 43 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.34 12.56 7.03 -89.69 -0.63 11.93 16 48 H 0.10 3.49 7.03 -2.38 -0.02 3.47 16 49 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 50 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 51 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -68.55 394.49 3.17 -65.37 By element: Atomic # 1 Polarization: 48.14 SS G_CDS: -0.41 Total: 47.73 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 5.86 Total: -8.48 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -3.87 Total: -108.72 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -0.42 Total: -41.71 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.55 3.17 -65.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181265005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.020 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds