Wall clock time and date at job start Tue Mar 31 2020 19:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47258 * 2 1 4 4 C 1.46502 * 119.99668 * 269.99737 * 3 2 1 5 5 C 1.34776 * 120.00555 * 89.99716 * 3 2 1 6 6 O 1.21286 * 119.99517 * 359.97438 * 5 3 2 7 7 C 1.50697 * 120.00343 * 180.02562 * 5 3 2 8 8 H 1.08995 * 109.46875 * 59.99680 * 7 5 3 9 9 C 1.53006 * 109.46955 * 299.99619 * 7 5 3 10 10 N 1.46900 * 109.47164 * 179.97438 * 7 5 3 11 11 C 1.46896 * 111.00195 * 204.99719 * 10 7 5 12 12 C 1.50697 * 109.47382 * 179.97438 * 11 10 7 13 13 C 1.38284 * 119.97210 * 269.97968 * 12 11 10 14 14 C 1.38250 * 120.10839 * 180.02562 * 13 12 11 15 15 C 1.38161 * 120.05581 * 359.68103 * 14 13 12 16 16 C 1.38710 * 119.94432 * 0.61525 * 15 14 13 17 17 O 1.35900 * 120.05544 * 179.67631 * 16 15 14 18 18 C 1.42898 * 117.00172 * 359.72769 * 17 16 15 19 19 C 1.52997 * 109.47319 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46838 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47419 * 209.99978 * 24 22 20 27 27 H 1.48499 * 109.47011 * 330.00539 * 24 22 20 28 28 C 1.38129 * 119.97079 * 90.00085 * 12 11 10 29 29 H 1.09009 * 109.46662 * 60.00173 * 1 2 3 30 30 H 1.08994 * 109.47613 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47523 * 300.00527 * 1 2 3 32 32 H 1.08998 * 109.47523 * 239.99473 * 2 1 3 33 33 H 1.09003 * 109.47088 * 119.99793 * 2 1 3 34 34 H 1.09006 * 109.46961 * 270.00133 * 4 3 2 35 35 H 1.08995 * 109.47512 * 29.99706 * 4 3 2 36 36 H 1.08996 * 109.47394 * 150.00206 * 4 3 2 37 37 H 1.08996 * 109.46750 * 179.97438 * 9 7 5 38 38 H 1.08989 * 109.47362 * 300.00203 * 9 7 5 39 39 H 1.09002 * 109.46729 * 59.99944 * 9 7 5 40 40 H 1.00903 * 110.99490 * 81.04421 * 10 7 5 41 41 H 1.09005 * 109.46944 * 59.99947 * 11 10 7 42 42 H 1.09002 * 109.47398 * 300.00389 * 11 10 7 43 43 H 1.07994 * 119.94418 * 0.02562 * 13 12 11 44 44 H 1.08002 * 119.97138 * 179.97438 * 14 13 12 45 45 H 1.08006 * 120.02996 * 180.29325 * 15 14 13 46 46 H 1.09002 * 109.47259 * 300.00149 * 18 17 16 47 47 H 1.09001 * 109.47074 * 60.00171 * 18 17 16 48 48 H 1.09002 * 109.47153 * 300.00307 * 19 18 17 49 49 H 1.08998 * 109.47533 * 59.99936 * 19 18 17 50 50 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 51 51 H 1.07999 * 120.02419 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 2.2429 2.0167 1.1671 6 8 2.0403 1.4451 2.2175 7 6 2.7447 3.4376 1.1671 8 1 2.0265 4.0765 0.6534 9 6 4.0925 3.5025 0.4456 10 7 2.9075 3.8995 2.5520 11 6 2.8097 5.3629 2.6339 12 6 2.9805 5.7985 4.0664 13 6 1.8759 5.9102 4.8909 14 6 2.0293 6.3101 6.2054 15 6 3.2879 6.5928 6.7002 16 6 4.3967 6.4875 5.8735 17 8 5.6350 6.7715 6.3561 18 6 5.7209 7.1784 7.7233 19 6 7.1825 7.4520 8.0831 20 6 7.2732 7.8805 9.5251 21 1 6.3779 7.9503 10.1250 22 6 8.4993 8.1824 10.0788 23 7 9.5896 8.0969 9.3484 24 14 8.6116 8.7143 11.8660 25 1 8.7951 7.5188 12.7276 26 1 9.7673 9.6307 12.0381 27 1 7.3614 9.4161 12.2530 28 6 4.2402 6.0864 4.5546 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2920 1.9003 -1.5834 35 1 1.5818 1.6876 -2.0284 36 1 2.0956 3.1409 -1.1386 37 1 4.4552 4.5303 0.4452 38 1 4.8107 2.8636 0.9593 39 1 3.9713 3.1599 -0.5820 40 1 3.7789 3.5730 2.9420 41 1 1.8326 5.6826 2.2713 42 1 3.5900 5.8141 2.0210 43 1 0.8919 5.6846 4.5073 44 1 1.1651 6.3969 6.8473 45 1 3.4078 6.9006 7.7286 46 1 5.1343 8.0854 7.8700 47 1 5.3317 6.3865 8.3632 48 1 7.7688 6.5448 7.9365 49 1 7.5723 8.2437 7.4433 50 1 10.4522 8.3090 9.7380 51 1 5.1024 5.9989 3.9102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188898709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:19 Heat of formation + Delta-G solvation = -49.783884 kcal Electronic energy + Delta-G solvation = -27786.579146 eV Core-core repulsion = 23879.225626 eV Total energy + Delta-G solvation = -3907.353520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46812 -39.74886 -37.67963 -36.38252 -35.99815 -33.38389 -32.75808 -31.24531 -30.76544 -29.35482 -28.88893 -27.31265 -25.70976 -24.99762 -24.49442 -22.54259 -22.13824 -21.67471 -20.21417 -19.50473 -17.90073 -17.17742 -16.78276 -16.21358 -15.89101 -15.77029 -15.57171 -15.29920 -15.11550 -14.94804 -14.57329 -14.43890 -14.06302 -13.84548 -13.77263 -13.30145 -13.11372 -12.90666 -12.71038 -12.67308 -12.60016 -12.42664 -12.32202 -12.23952 -11.90582 -11.81493 -11.42886 -11.34165 -11.30244 -11.26121 -10.86306 -10.70896 -10.44294 -9.91521 -9.83514 -9.64729 -9.29117 -9.06630 -8.81006 -8.53276 -8.44014 -7.79725 -6.09711 -4.14236 1.45441 1.73959 2.41719 2.56981 3.28224 3.34056 3.36979 3.74030 3.87311 4.13221 4.22471 4.41763 4.51910 4.57219 4.64169 4.68539 4.73818 4.80242 4.97457 4.98235 5.02381 5.09153 5.14762 5.21686 5.26753 5.28663 5.32533 5.34800 5.44442 5.53529 5.54967 5.65898 5.69108 5.79729 5.85273 6.05588 6.09118 6.13154 6.21174 6.57512 6.58353 6.59242 6.75017 6.76463 7.00477 7.02186 7.13235 7.51788 7.64944 7.82607 7.97820 8.08272 8.24875 8.91307 9.50049 11.01845 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.001704 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.968203 B =16428.305638 C =16796.859501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.624 5.624 4 C 0.076 3.924 5 C 0.518 3.482 6 O -0.511 6.511 7 C 0.070 3.930 8 H 0.103 0.897 9 C -0.195 4.195 10 N -0.662 5.662 11 C 0.105 3.895 12 C -0.052 4.052 13 C -0.146 4.146 14 C -0.082 4.082 15 C -0.209 4.209 16 C 0.144 3.856 17 O -0.317 6.317 18 C 0.065 3.935 19 C 0.025 3.975 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 C -0.155 4.155 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.353 0.647 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.028 0.972 49 H 0.027 0.973 50 H 0.263 0.737 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.044 -11.390 -25.132 32.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.360 5.360 4 C -0.067 4.067 5 C 0.304 3.696 6 O -0.384 6.384 7 C -0.044 4.044 8 H 0.121 0.879 9 C -0.253 4.253 10 N -0.293 5.293 11 C -0.023 4.023 12 C -0.053 4.053 13 C -0.165 4.165 14 C -0.100 4.100 15 C -0.228 4.228 16 C 0.097 3.903 17 O -0.230 6.230 18 C -0.009 4.009 19 C -0.012 4.012 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.174 4.174 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.173 0.827 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.073 0.927 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.412 -11.776 -24.457 32.800 hybrid contribution 0.855 0.621 0.707 1.271 sum -17.557 -11.155 -23.750 31.572 Atomic orbital electron populations 1.22125 0.95916 1.02225 1.02316 1.21394 0.94413 0.82200 1.03075 1.47914 1.67437 1.14437 1.06224 1.21955 1.01220 0.97832 0.85714 1.20656 0.77436 0.88336 0.83151 1.90722 1.49859 1.67059 1.30795 1.21433 0.97926 0.93957 0.91058 0.87948 1.22740 0.96920 1.03474 1.02207 1.60158 1.43258 1.09985 1.15926 1.20877 1.01481 0.86987 0.92954 1.19314 0.92537 0.98463 0.94979 1.20759 0.98172 1.03610 0.93917 1.20897 0.96473 0.97257 0.95347 1.21399 0.92818 1.07728 1.00840 1.19130 0.85071 0.93259 0.92828 1.86162 1.24841 1.80799 1.31183 1.23322 1.02947 0.97592 0.77010 1.19123 0.87325 0.98219 0.96529 1.20979 0.93364 1.46704 0.95434 0.92353 1.24991 0.95618 0.95315 0.98266 1.69980 0.98250 1.48293 1.36241 0.86482 0.77762 0.78580 0.84531 1.20490 1.21052 1.19761 1.20252 0.97184 1.06139 0.93844 0.92748 0.91623 0.92083 0.90732 0.89831 0.92181 0.91146 0.90822 0.91183 0.91611 0.90440 0.82683 0.90093 0.93972 0.86367 0.86162 0.85280 0.93152 0.93127 0.95409 0.95418 0.92728 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 2 C 0.11 0.74 6.13 -4.04 -0.02 0.72 16 3 N -0.62 -4.45 2.87 -181.58 -0.52 -4.98 16 4 C 0.08 0.26 8.80 59.85 0.53 0.79 16 5 C 0.52 5.30 7.15 -10.99 -0.08 5.23 16 6 O -0.51 -7.60 16.01 5.55 0.09 -7.51 16 7 C 0.07 0.56 2.19 -68.86 -0.15 0.41 16 8 H 0.10 0.65 7.06 -51.93 -0.37 0.28 16 9 C -0.19 -1.17 8.80 37.16 0.33 -0.84 16 10 N -0.66 -7.05 5.73 -109.22 -0.63 -7.68 16 11 C 0.11 1.04 5.61 -4.98 -0.03 1.01 16 12 C -0.05 -0.68 5.39 -104.65 -0.56 -1.25 16 13 C -0.15 -1.91 9.70 -39.56 -0.38 -2.29 16 14 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 15 C -0.21 -3.40 9.04 -39.44 -0.36 -3.75 16 16 C 0.14 2.57 6.69 -39.22 -0.26 2.31 16 17 O -0.32 -6.64 10.14 -19.43 -0.20 -6.84 16 18 C 0.07 1.43 4.68 37.16 0.17 1.60 16 19 C 0.03 0.67 5.34 -27.89 -0.15 0.52 16 20 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 24 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 C -0.15 -2.36 9.64 -39.43 -0.38 -2.74 16 29 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.08 0.72 7.42 -51.93 -0.39 0.33 16 34 H 0.06 0.16 6.95 -51.93 -0.36 -0.20 16 35 H 0.07 0.15 8.07 -51.93 -0.42 -0.27 16 36 H 0.07 0.19 6.01 -51.93 -0.31 -0.12 16 37 H 0.07 0.40 7.45 -51.93 -0.39 0.01 16 38 H 0.06 0.48 8.13 -51.94 -0.42 0.06 16 39 H 0.08 0.31 4.53 -51.93 -0.24 0.08 16 40 H 0.35 4.06 8.47 -39.29 -0.33 3.73 16 41 H 0.08 0.70 8.00 -51.93 -0.42 0.29 16 42 H 0.04 0.36 7.38 -51.93 -0.38 -0.02 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.13 2.07 6.30 -52.48 -0.33 1.74 16 46 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 47 H 0.05 1.06 7.65 -51.93 -0.40 0.67 16 48 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 412.98 15.07 6.22 6.22 Total: -1.00 -33.98 412.98 -9.58 -43.56 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.49 Total: 0.68 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.78 Total: -14.00 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.41 Total: -38.53 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.11 Total: -14.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.98 -9.58 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188898709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.222 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds