Wall clock time and date at job start Tue Mar 31 2020 19:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47258 * 2 1 4 4 C 1.46502 * 119.99668 * 269.99737 * 3 2 1 5 5 C 1.34776 * 120.00555 * 89.99716 * 3 2 1 6 6 O 1.21286 * 119.99517 * 359.97438 * 5 3 2 7 7 C 1.50697 * 120.00343 * 180.02562 * 5 3 2 8 8 H 1.08995 * 109.46875 * 59.99680 * 7 5 3 9 9 C 1.53006 * 109.46955 * 299.99619 * 7 5 3 10 10 N 1.46900 * 109.47164 * 179.97438 * 7 5 3 11 11 C 1.46896 * 111.00195 * 204.99719 * 10 7 5 12 12 C 1.50697 * 109.47382 * 179.97438 * 11 10 7 13 13 C 1.38284 * 119.97210 * 269.97968 * 12 11 10 14 14 C 1.38250 * 120.10839 * 180.02562 * 13 12 11 15 15 C 1.38161 * 120.05581 * 359.68103 * 14 13 12 16 16 C 1.38710 * 119.94432 * 0.61525 * 15 14 13 17 17 O 1.35900 * 120.05544 * 179.67631 * 16 15 14 18 18 C 1.42898 * 117.00172 * 359.72769 * 17 16 15 19 19 C 1.52997 * 109.47319 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46838 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47419 * 209.99978 * 24 22 20 27 27 H 1.48499 * 109.47011 * 330.00539 * 24 22 20 28 28 C 1.38129 * 119.97079 * 90.00085 * 12 11 10 29 29 H 1.09009 * 109.46662 * 60.00173 * 1 2 3 30 30 H 1.08994 * 109.47613 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47523 * 300.00527 * 1 2 3 32 32 H 1.08998 * 109.47523 * 239.99473 * 2 1 3 33 33 H 1.09003 * 109.47088 * 119.99793 * 2 1 3 34 34 H 1.09006 * 109.46961 * 270.00133 * 4 3 2 35 35 H 1.08995 * 109.47512 * 29.99706 * 4 3 2 36 36 H 1.08996 * 109.47394 * 150.00206 * 4 3 2 37 37 H 1.08996 * 109.46750 * 179.97438 * 9 7 5 38 38 H 1.08989 * 109.47362 * 300.00203 * 9 7 5 39 39 H 1.09002 * 109.46729 * 59.99944 * 9 7 5 40 40 H 1.00903 * 110.99490 * 81.04421 * 10 7 5 41 41 H 1.09005 * 109.46944 * 59.99947 * 11 10 7 42 42 H 1.09002 * 109.47398 * 300.00389 * 11 10 7 43 43 H 1.07994 * 119.94418 * 0.02562 * 13 12 11 44 44 H 1.08002 * 119.97138 * 179.97438 * 14 13 12 45 45 H 1.08006 * 120.02996 * 180.29325 * 15 14 13 46 46 H 1.09002 * 109.47259 * 300.00149 * 18 17 16 47 47 H 1.09001 * 109.47074 * 60.00171 * 18 17 16 48 48 H 1.09002 * 109.47153 * 300.00307 * 19 18 17 49 49 H 1.08998 * 109.47533 * 59.99936 * 19 18 17 50 50 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 51 51 H 1.07999 * 120.02419 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 2.2429 2.0167 1.1671 6 8 2.0403 1.4451 2.2175 7 6 2.7447 3.4376 1.1671 8 1 2.0265 4.0765 0.6534 9 6 4.0925 3.5025 0.4456 10 7 2.9075 3.8995 2.5520 11 6 2.8097 5.3629 2.6339 12 6 2.9805 5.7985 4.0664 13 6 1.8759 5.9102 4.8909 14 6 2.0293 6.3101 6.2054 15 6 3.2879 6.5928 6.7002 16 6 4.3967 6.4875 5.8735 17 8 5.6350 6.7715 6.3561 18 6 5.7209 7.1784 7.7233 19 6 7.1825 7.4520 8.0831 20 6 7.2732 7.8805 9.5251 21 1 6.3779 7.9503 10.1250 22 6 8.4993 8.1824 10.0788 23 7 9.5896 8.0969 9.3484 24 14 8.6116 8.7143 11.8660 25 1 8.7951 7.5188 12.7276 26 1 9.7673 9.6307 12.0381 27 1 7.3614 9.4161 12.2530 28 6 4.2402 6.0864 4.5546 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2920 1.9003 -1.5834 35 1 1.5818 1.6876 -2.0284 36 1 2.0956 3.1409 -1.1386 37 1 4.4552 4.5303 0.4452 38 1 4.8107 2.8636 0.9593 39 1 3.9713 3.1599 -0.5820 40 1 3.7789 3.5730 2.9420 41 1 1.8326 5.6826 2.2713 42 1 3.5900 5.8141 2.0210 43 1 0.8919 5.6846 4.5073 44 1 1.1651 6.3969 6.8473 45 1 3.4078 6.9006 7.7286 46 1 5.1343 8.0854 7.8700 47 1 5.3317 6.3865 8.3632 48 1 7.7688 6.5448 7.9365 49 1 7.5723 8.2437 7.4433 50 1 10.4522 8.3090 9.7380 51 1 5.1024 5.9989 3.9102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188898709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:18 Heat of formation + Delta-G solvation = -71.607631 kcal Electronic energy + Delta-G solvation = -27787.525495 eV Core-core repulsion = 23879.225626 eV Total energy + Delta-G solvation = -3908.299868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22840 -40.96955 -38.90167 -37.20844 -36.75570 -35.47941 -33.54697 -32.59060 -31.93550 -30.68568 -29.79940 -27.76592 -27.10025 -26.23235 -25.30721 -23.58311 -23.32646 -22.92251 -21.60049 -20.17704 -19.18864 -18.32058 -17.85894 -17.42015 -17.03585 -16.94953 -16.85021 -16.49170 -16.43915 -15.87065 -15.62380 -15.31299 -14.91394 -14.53475 -14.44095 -14.34551 -14.31800 -14.16691 -14.00720 -13.74562 -13.43952 -13.24316 -13.04543 -13.01541 -12.97003 -12.87835 -12.61839 -12.56555 -12.44279 -12.38926 -12.26322 -11.95004 -11.88172 -11.59993 -11.57666 -11.39338 -10.68111 -10.63150 -9.87901 -9.63837 -9.32102 -9.09446 -8.27805 -6.41610 0.32815 0.54199 1.40112 1.42453 1.53614 1.69678 2.00914 2.26342 2.50402 2.76774 3.06502 3.34745 3.58986 3.79547 3.90802 4.03925 4.06502 4.14612 4.17761 4.22702 4.25185 4.30204 4.32137 4.35591 4.44882 4.52366 4.56508 4.62174 4.68828 4.71437 4.72370 4.76160 4.83295 4.84194 4.95262 5.02650 5.11341 5.21310 5.28399 5.30248 5.42008 5.45246 5.52009 5.61359 5.64179 5.67361 5.86585 5.95803 6.06874 6.23776 6.47033 6.56320 6.72844 7.28481 7.28862 8.85264 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.001704 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.968203 B =16428.305638 C =16796.859501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.107 3.893 3 N -0.619 5.619 4 C 0.066 3.934 5 C 0.509 3.491 6 O -0.572 6.572 7 C 0.074 3.926 8 H 0.127 0.873 9 C -0.187 4.187 10 N -0.681 5.681 11 C 0.111 3.889 12 C -0.047 4.047 13 C -0.141 4.141 14 C -0.081 4.081 15 C -0.222 4.222 16 C 0.105 3.895 17 O -0.341 6.341 18 C 0.085 3.915 19 C 0.028 3.972 20 C -0.548 4.548 21 H 0.070 0.930 22 C 0.002 3.998 23 N -0.930 5.930 24 Si 0.977 3.023 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.260 1.260 28 C -0.161 4.161 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.101 0.899 40 H 0.343 0.657 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.126 0.874 46 H 0.060 0.940 47 H 0.057 0.943 48 H -0.002 1.002 49 H 0.000 1.000 50 H 0.267 0.733 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.198 -11.124 -26.845 35.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.353 5.353 4 C -0.076 4.076 5 C 0.297 3.703 6 O -0.450 6.450 7 C -0.039 4.039 8 H 0.145 0.855 9 C -0.246 4.246 10 N -0.312 5.312 11 C -0.017 4.017 12 C -0.047 4.047 13 C -0.160 4.160 14 C -0.099 4.099 15 C -0.241 4.241 16 C 0.060 3.940 17 O -0.255 6.255 18 C 0.011 3.989 19 C -0.009 4.009 20 C -0.586 4.586 21 H 0.088 0.912 22 C -0.197 4.197 23 N -0.569 5.569 24 Si 0.800 3.200 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.183 1.183 28 C -0.180 4.180 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.162 0.838 41 H 0.119 0.881 42 H 0.076 0.924 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.016 0.984 49 H 0.018 0.982 50 H 0.076 0.924 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.595 -11.511 -26.243 35.289 hybrid contribution 1.430 0.443 1.042 1.824 sum -19.165 -11.068 -25.200 33.539 Atomic orbital electron populations 1.22059 0.95471 1.02794 1.01539 1.21488 0.94781 0.82190 1.03123 1.48032 1.65919 1.14551 1.06793 1.22263 1.02648 0.98450 0.84200 1.21155 0.76852 0.89140 0.83161 1.90692 1.52770 1.68486 1.33022 1.21496 0.99443 0.92861 0.90090 0.85534 1.22691 0.95173 1.03717 1.03009 1.60113 1.42881 1.10272 1.17906 1.20908 1.03162 0.86720 0.90913 1.19685 0.91465 0.96869 0.96727 1.21170 0.99348 1.01901 0.93554 1.21229 0.96269 0.96236 0.96197 1.21494 0.93476 1.08505 1.00665 1.19491 0.84265 0.95964 0.94291 1.86072 1.27249 1.81961 1.30260 1.22844 0.99605 0.98270 0.78219 1.18963 0.90076 0.95752 0.96081 1.21401 0.94130 1.46848 0.96200 0.91200 1.26043 0.95074 0.95045 1.03493 1.70123 0.98979 1.49165 1.38628 0.85275 0.78266 0.78380 0.78078 1.19611 1.20506 1.18348 1.20451 0.98541 1.06038 0.92972 0.91090 0.90503 0.95065 0.87746 0.92664 0.90826 0.89158 0.89465 0.90354 0.93350 0.88060 0.83800 0.88069 0.92414 0.83797 0.83435 0.85649 0.92208 0.92514 0.98395 0.98171 0.92424 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.24 71.98 0.74 -1.08 16 2 C 0.11 1.31 6.13 86.38 0.53 1.84 16 3 N -0.62 -7.83 2.87 -846.77 -2.43 -10.26 16 4 C 0.07 0.23 8.80 127.77 1.12 1.35 16 5 C 0.51 10.13 7.15 87.66 0.63 10.75 16 6 O -0.57 -17.64 16.01 -3.05 -0.05 -17.69 16 7 C 0.07 1.05 2.19 44.17 0.10 1.15 16 8 H 0.13 1.16 7.06 -2.39 -0.02 1.15 16 9 C -0.19 -1.85 8.80 71.98 0.63 -1.21 16 10 N -0.68 -13.70 5.73 -499.47 -2.86 -16.56 16 11 C 0.11 1.92 5.61 85.56 0.48 2.40 16 12 C -0.05 -1.15 5.39 -19.88 -0.11 -1.26 16 13 C -0.14 -3.38 9.70 22.28 0.22 -3.16 16 14 C -0.08 -2.13 10.04 22.25 0.22 -1.90 16 15 C -0.22 -7.24 9.04 22.36 0.20 -7.04 16 16 C 0.11 3.85 6.69 22.50 0.15 4.00 16 17 O -0.34 -15.02 10.14 -92.43 -0.94 -15.96 16 18 C 0.08 3.87 4.68 71.98 0.34 4.21 16 19 C 0.03 1.60 5.34 29.85 0.16 1.75 16 20 C -0.55 -31.57 9.11 25.60 0.23 -31.33 16 21 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 22 C 0.00 0.12 5.46 84.65 0.46 0.58 16 23 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 24 Si 0.98 44.10 29.54 68.60 2.03 46.12 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 27 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 28 C -0.16 -4.91 9.64 22.37 0.22 -4.70 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.65 8.07 -2.39 -0.02 0.63 16 33 H 0.05 1.00 7.42 -2.39 -0.02 0.99 16 34 H 0.07 0.11 6.95 -2.38 -0.02 0.09 16 35 H 0.09 0.02 8.07 -2.39 -0.02 0.00 16 36 H 0.09 0.10 6.01 -2.39 -0.01 0.08 16 37 H 0.08 0.67 7.45 -2.39 -0.02 0.66 16 38 H 0.05 0.66 8.13 -2.39 -0.02 0.64 16 39 H 0.10 0.49 4.53 -2.39 -0.01 0.48 16 40 H 0.34 7.92 8.47 -89.69 -0.76 7.16 16 41 H 0.10 1.37 8.00 -2.38 -0.02 1.35 16 42 H 0.06 0.84 7.38 -2.39 -0.02 0.82 16 43 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 45 H 0.13 4.06 6.30 -2.91 -0.02 4.04 16 46 H 0.06 2.56 7.67 -2.39 -0.02 2.54 16 47 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 48 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 49 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 50 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 51 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -78.26 412.98 2.51 -75.75 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.16 Total: 19.11 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 6.32 Total: -23.64 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -5.01 Total: -83.69 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.99 Total: -33.65 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -78.26 2.51 -75.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188898709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.144 kcal (2) G-P(sol) polarization free energy of solvation -78.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds