Wall clock time and date at job start Tue Mar 31 2020 18:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46906 * 109.46982 * 2 1 4 4 C 1.46905 * 110.99422 * 300.84949 * 3 2 1 5 5 C 1.52998 * 109.47250 * 288.92956 * 4 3 2 6 6 C 1.46893 * 111.00245 * 64.79985 * 3 2 1 7 7 C 1.53000 * 109.46836 * 66.04849 * 6 3 2 8 8 C 1.53004 * 109.46915 * 179.97438 * 7 6 3 9 9 C 1.53000 * 109.46915 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47353 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00281 * 180.02562 * 10 9 8 12 12 O 1.21596 * 120.00073 * 0.02562 * 11 10 9 13 13 C 1.47533 * 119.99787 * 180.02562 * 11 10 9 14 14 C 1.39664 * 120.20149 * 0.02562 * 13 11 10 15 15 C 1.37823 * 119.92375 * 179.97438 * 14 13 11 16 16 C 1.38584 * 120.32340 * 0.02618 * 15 14 13 17 17 C 1.38022 * 120.39687 * 359.97438 * 16 15 14 18 18 C 1.38828 * 120.07726 * 359.96166 * 17 16 15 19 19 O 1.35516 * 120.16373 * 180.02562 * 18 17 16 20 20 C 1.34812 * 117.00223 * 354.34887 * 19 18 17 21 21 H 1.08006 * 119.99981 * 5.06475 * 20 19 18 22 22 C 1.38701 * 120.00352 * 185.05504 * 20 19 18 23 23 N 1.31514 * 119.99955 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99818 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47216 * 89.99732 * 24 22 20 26 26 H 1.48499 * 109.47082 * 209.99495 * 24 22 20 27 27 H 1.48497 * 109.47132 * 329.99688 * 24 22 20 28 28 H 1.09001 * 109.47767 * 305.16035 * 1 2 3 29 29 H 1.09005 * 109.47708 * 65.16327 * 1 2 3 30 30 H 1.09004 * 109.47348 * 185.16316 * 1 2 3 31 31 H 1.08995 * 109.47711 * 239.99849 * 2 1 3 32 32 H 1.08999 * 109.47302 * 119.99364 * 2 1 3 33 33 H 1.08996 * 109.47622 * 48.93357 * 4 3 2 34 34 H 1.09003 * 109.46809 * 168.93161 * 4 3 2 35 35 H 1.08998 * 109.47567 * 185.09140 * 5 4 3 36 36 H 1.09004 * 109.47245 * 305.09692 * 5 4 3 37 37 H 1.09002 * 109.47080 * 65.09014 * 5 4 3 38 38 H 1.08996 * 109.47537 * 306.04787 * 6 3 2 39 39 H 1.08999 * 109.47033 * 186.04813 * 6 3 2 40 40 H 1.09001 * 109.47194 * 60.00411 * 7 6 3 41 41 H 1.08999 * 109.47280 * 299.99812 * 7 6 3 42 42 H 1.09004 * 109.47108 * 60.00358 * 8 7 6 43 43 H 1.08999 * 109.47237 * 300.00137 * 8 7 6 44 44 H 1.09001 * 109.47194 * 60.00709 * 9 8 7 45 45 H 1.08999 * 109.47280 * 300.00111 * 9 8 7 46 46 H 0.97004 * 119.99825 * 0.02562 * 10 9 8 47 47 H 1.08000 * 120.03928 * 0.28041 * 14 13 11 48 48 H 1.07998 * 119.84128 * 179.97438 * 15 14 13 49 49 H 1.07996 * 119.79983 * 179.97438 * 16 15 14 50 50 H 1.08007 * 119.95983 * 179.97438 * 17 16 15 51 51 H 0.96998 * 119.99975 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5319 2.1157 -1.1775 5 6 2.2404 1.5957 -2.4299 6 6 1.6446 2.0760 1.2408 7 6 2.3725 1.4327 2.4228 8 6 1.9824 2.1528 3.7152 9 6 2.7099 1.5090 4.8972 10 7 2.3369 2.1989 6.1347 11 6 2.8593 1.8013 7.3116 12 8 3.6407 0.8703 7.3465 13 6 2.4832 2.4958 8.5578 14 6 1.5857 3.5652 8.5227 15 6 1.2379 4.2095 9.6903 16 6 1.7749 3.8019 10.9011 17 6 2.6631 2.7466 10.9512 18 6 3.0239 2.0849 9.7853 19 8 3.8954 1.0483 9.8325 20 6 4.4666 0.7826 11.0244 21 1 4.1621 1.3313 11.9034 22 6 5.4453 -0.1954 11.1219 23 7 6.0021 -0.4549 12.2847 24 14 5.9724 -1.1441 9.6015 25 1 7.0975 -0.4349 8.9409 26 1 6.4097 -2.5074 9.9956 27 1 4.8289 -1.2440 8.6593 28 1 -0.3635 0.5918 0.8401 29 1 -0.3635 0.4317 -0.9326 30 1 -0.3634 -1.0235 0.0925 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.4572 1.9653 -1.2791 34 1 1.7402 3.1789 -1.0573 35 1 1.9464 2.1973 -3.2899 36 1 3.3195 1.6628 -2.2912 37 1 1.9601 0.5563 -2.6007 38 1 0.5678 1.9961 1.3901 39 1 1.9245 3.1271 1.1702 40 1 3.4493 1.5128 2.2736 41 1 2.0926 0.3816 2.4934 42 1 0.9056 2.0731 3.8647 43 1 2.2626 3.2038 3.6443 44 1 3.7867 1.5884 4.7480 45 1 2.4292 0.4582 4.9679 46 1 1.7138 2.9418 6.1069 47 1 1.1608 3.8839 7.5823 48 1 0.5440 5.0366 9.6616 49 1 1.4968 4.3130 11.8109 50 1 3.0777 2.4351 11.8986 51 1 6.6868 -1.1386 12.3528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195238053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:18 Heat of formation + Delta-G solvation = -41.755820 kcal Electronic energy + Delta-G solvation = -28148.853299 eV Core-core repulsion = 24241.847902 eV Total energy + Delta-G solvation = -3907.005397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.77623 -39.03489 -38.27204 -36.52112 -35.62069 -33.27104 -32.43971 -31.68432 -30.85674 -29.69797 -29.19187 -27.02842 -25.28896 -24.66147 -23.62969 -22.52246 -21.46937 -21.14393 -20.12537 -19.84218 -17.90414 -17.79010 -16.69080 -16.48232 -16.20020 -15.70189 -15.62809 -14.75396 -14.73210 -14.39562 -14.24462 -14.13345 -13.98636 -13.71753 -13.57882 -13.44203 -12.88789 -12.80778 -12.70990 -12.60015 -12.34830 -12.23029 -12.14950 -11.91433 -11.70228 -11.65003 -11.46608 -11.33352 -11.26031 -11.13053 -11.03076 -10.81280 -10.70588 -10.58220 -10.03413 -9.60702 -9.03809 -8.87931 -8.70902 -8.62378 -8.36829 -7.47075 -6.46037 -4.11045 1.58634 2.19358 3.32890 3.39713 3.41694 3.59839 3.68126 3.69353 4.37182 4.49169 4.53038 4.54461 4.69088 4.74879 4.80180 4.85658 4.90861 4.99573 5.06577 5.10229 5.12304 5.16051 5.18918 5.30608 5.31780 5.39326 5.45030 5.51320 5.59598 5.62256 5.64597 5.66111 5.72964 5.75261 5.85258 5.91875 6.01088 6.04573 6.08162 6.16171 6.38394 6.55962 6.73939 6.75033 6.80765 6.84723 7.01685 7.15315 7.48773 7.68643 7.95708 7.98160 8.87670 8.91752 9.52965 10.59007 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002242 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.325486 B =12488.140166 C =14143.448038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 N -0.537 5.537 4 C 0.044 3.956 5 C -0.147 4.147 6 C 0.052 3.948 7 C -0.113 4.113 8 C -0.128 4.128 9 C 0.124 3.876 10 N -0.742 5.742 11 C 0.559 3.441 12 O -0.519 6.519 13 C -0.227 4.227 14 C -0.041 4.041 15 C -0.222 4.222 16 C -0.051 4.051 17 C -0.227 4.227 18 C 0.201 3.799 19 O -0.165 6.165 20 C -0.396 4.396 21 H 0.108 0.892 22 C 0.071 3.929 23 N -0.870 5.870 24 Si 0.901 3.099 25 H -0.274 1.274 26 H -0.287 1.287 27 H -0.238 1.238 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.393 0.607 47 H 0.113 0.887 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.138 0.862 51 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.134 7.017 -23.401 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.085 4.085 3 N -0.261 5.261 4 C -0.084 4.084 5 C -0.205 4.205 6 C -0.076 4.076 7 C -0.152 4.152 8 C -0.166 4.166 9 C 0.000 4.000 10 N -0.398 5.398 11 C 0.349 3.651 12 O -0.394 6.394 13 C -0.231 4.231 14 C -0.060 4.060 15 C -0.241 4.241 16 C -0.070 4.070 17 C -0.246 4.246 18 C 0.143 3.857 19 O -0.065 6.065 20 C -0.471 4.471 21 H 0.125 0.875 22 C -0.134 4.134 23 N -0.505 5.505 24 Si 0.725 3.275 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.161 1.161 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.228 0.772 47 H 0.131 0.869 48 H 0.130 0.870 49 H 0.132 0.868 50 H 0.156 0.844 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.750 5.970 -23.446 26.475 hybrid contribution -0.968 0.075 -0.264 1.007 sum -11.718 6.045 -23.710 27.130 Atomic orbital electron populations 1.22424 0.98393 1.02536 1.01947 1.22233 0.92807 0.90334 1.03085 1.62269 1.59412 1.02361 1.02013 1.22141 0.97471 0.98124 0.90650 1.21764 1.01609 1.00893 0.96238 1.22175 0.97903 0.98258 0.89272 1.21499 1.01590 0.99787 0.92285 1.21740 1.00592 1.00355 0.93961 1.21202 0.99570 0.96559 0.82685 1.45884 1.49806 1.37493 1.06568 1.18200 0.80547 0.83361 0.82966 1.90857 1.33888 1.28265 1.86439 1.18881 1.09204 1.03858 0.91203 1.20755 0.94398 0.93193 0.97630 1.20537 1.06664 1.04171 0.92707 1.20964 0.94071 0.94677 0.97262 1.21287 1.04025 1.00319 0.98977 1.19031 0.88669 0.86067 0.91935 1.83781 1.48425 1.39897 1.34437 1.20924 1.19647 1.21939 0.84613 0.87463 1.24499 0.94497 0.96270 0.98161 1.69637 1.25369 1.31676 1.23838 0.86193 0.80961 0.77881 0.82442 1.19925 1.21269 1.16118 0.92250 0.92516 0.91986 0.90657 0.90198 0.94286 0.91088 0.92490 0.91760 0.92889 0.94379 0.90848 0.90673 0.91544 0.91550 0.91267 0.91742 0.91898 0.77216 0.86876 0.87029 0.86840 0.84421 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 9.22 37.15 0.34 -0.92 16 2 C 0.04 0.31 5.71 -3.82 -0.02 0.29 16 3 N -0.54 -4.18 4.67 -234.64 -1.10 -5.28 16 4 C 0.04 0.29 5.50 -3.82 -0.02 0.27 16 5 C -0.15 -0.89 9.83 37.16 0.37 -0.52 16 6 C 0.05 0.38 4.79 -3.83 -0.02 0.37 16 7 C -0.11 -0.94 5.15 -26.73 -0.14 -1.08 16 8 C -0.13 -1.11 5.33 -26.73 -0.14 -1.25 16 9 C 0.12 1.60 5.67 -4.04 -0.02 1.57 16 10 N -0.74 -10.95 5.51 -61.35 -0.34 -11.28 16 11 C 0.56 11.47 7.76 -12.47 -0.10 11.37 16 12 O -0.52 -13.12 15.17 -16.57 -0.25 -13.37 16 13 C -0.23 -4.64 5.89 -104.81 -0.62 -5.26 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 15 C -0.22 -3.43 10.03 -39.61 -0.40 -3.83 16 16 C -0.05 -0.88 10.03 -39.53 -0.40 -1.27 16 17 C -0.23 -4.82 9.16 -39.44 -0.36 -5.18 16 18 C 0.20 4.79 6.66 -38.60 -0.26 4.53 16 19 O -0.17 -4.60 6.67 -21.04 -0.14 -4.74 16 20 C -0.40 -11.43 9.95 30.90 0.31 -11.12 16 21 H 0.11 3.07 5.44 -52.48 -0.29 2.79 16 22 C 0.07 2.07 5.49 -17.52 -0.10 1.97 16 23 N -0.87 -25.42 13.96 55.48 0.77 -24.65 16 24 Si 0.90 23.45 28.62 -169.99 -4.86 18.59 16 25 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.24 -6.56 7.11 56.52 0.40 -6.15 16 28 H 0.06 0.41 6.17 -51.93 -0.32 0.09 16 29 H 0.06 0.35 6.44 -51.93 -0.33 0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.52 6.81 -51.93 -0.35 0.17 16 32 H 0.08 0.61 6.26 -51.93 -0.33 0.29 16 33 H 0.04 0.25 5.86 -51.93 -0.30 -0.05 16 34 H 0.07 0.45 7.83 -51.93 -0.41 0.05 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.32 6.97 -51.93 -0.36 -0.05 16 38 H 0.04 0.28 6.07 -51.93 -0.32 -0.04 16 39 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.57 6.46 -51.93 -0.34 0.24 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.39 4.50 6.50 -40.82 -0.27 4.23 16 47 H 0.11 1.34 6.40 -52.49 -0.34 1.00 16 48 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 50 H 0.14 3.03 5.64 -52.48 -0.30 2.74 16 51 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 401.91 15.07 6.06 6.06 Total: -1.00 -33.21 401.91 -9.82 -43.02 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.01 Total: 2.74 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.94 Total: -11.09 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.66 Total: -41.21 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.39 Total: -18.11 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.86 Total: 18.59 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.21 -9.82 -43.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195238053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.266 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds