Wall clock time and date at job start Tue Mar 31 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46906 * 109.46982 * 2 1 4 4 C 1.46905 * 110.99422 * 300.84949 * 3 2 1 5 5 C 1.52998 * 109.47250 * 288.92956 * 4 3 2 6 6 C 1.46893 * 111.00245 * 64.79985 * 3 2 1 7 7 C 1.53000 * 109.46836 * 66.04849 * 6 3 2 8 8 C 1.53004 * 109.46915 * 179.97438 * 7 6 3 9 9 C 1.53000 * 109.46915 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47353 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00281 * 180.02562 * 10 9 8 12 12 O 1.21596 * 120.00073 * 0.02562 * 11 10 9 13 13 C 1.47533 * 119.99787 * 180.02562 * 11 10 9 14 14 C 1.39664 * 120.20149 * 0.02562 * 13 11 10 15 15 C 1.37823 * 119.92375 * 179.97438 * 14 13 11 16 16 C 1.38584 * 120.32340 * 0.02618 * 15 14 13 17 17 C 1.38022 * 120.39687 * 359.97438 * 16 15 14 18 18 C 1.38828 * 120.07726 * 359.96166 * 17 16 15 19 19 O 1.35516 * 120.16373 * 180.02562 * 18 17 16 20 20 C 1.34812 * 117.00223 * 354.34887 * 19 18 17 21 21 H 1.08006 * 119.99981 * 5.06475 * 20 19 18 22 22 C 1.38701 * 120.00352 * 185.05504 * 20 19 18 23 23 N 1.31514 * 119.99955 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99818 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47216 * 89.99732 * 24 22 20 26 26 H 1.48499 * 109.47082 * 209.99495 * 24 22 20 27 27 H 1.48497 * 109.47132 * 329.99688 * 24 22 20 28 28 H 1.09001 * 109.47767 * 305.16035 * 1 2 3 29 29 H 1.09005 * 109.47708 * 65.16327 * 1 2 3 30 30 H 1.09004 * 109.47348 * 185.16316 * 1 2 3 31 31 H 1.08995 * 109.47711 * 239.99849 * 2 1 3 32 32 H 1.08999 * 109.47302 * 119.99364 * 2 1 3 33 33 H 1.08996 * 109.47622 * 48.93357 * 4 3 2 34 34 H 1.09003 * 109.46809 * 168.93161 * 4 3 2 35 35 H 1.08998 * 109.47567 * 185.09140 * 5 4 3 36 36 H 1.09004 * 109.47245 * 305.09692 * 5 4 3 37 37 H 1.09002 * 109.47080 * 65.09014 * 5 4 3 38 38 H 1.08996 * 109.47537 * 306.04787 * 6 3 2 39 39 H 1.08999 * 109.47033 * 186.04813 * 6 3 2 40 40 H 1.09001 * 109.47194 * 60.00411 * 7 6 3 41 41 H 1.08999 * 109.47280 * 299.99812 * 7 6 3 42 42 H 1.09004 * 109.47108 * 60.00358 * 8 7 6 43 43 H 1.08999 * 109.47237 * 300.00137 * 8 7 6 44 44 H 1.09001 * 109.47194 * 60.00709 * 9 8 7 45 45 H 1.08999 * 109.47280 * 300.00111 * 9 8 7 46 46 H 0.97004 * 119.99825 * 0.02562 * 10 9 8 47 47 H 1.08000 * 120.03928 * 0.28041 * 14 13 11 48 48 H 1.07998 * 119.84128 * 179.97438 * 15 14 13 49 49 H 1.07996 * 119.79983 * 179.97438 * 16 15 14 50 50 H 1.08007 * 119.95983 * 179.97438 * 17 16 15 51 51 H 0.96998 * 119.99975 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5319 2.1157 -1.1775 5 6 2.2404 1.5957 -2.4299 6 6 1.6446 2.0760 1.2408 7 6 2.3725 1.4327 2.4228 8 6 1.9824 2.1528 3.7152 9 6 2.7099 1.5090 4.8972 10 7 2.3369 2.1989 6.1347 11 6 2.8593 1.8013 7.3116 12 8 3.6407 0.8703 7.3465 13 6 2.4832 2.4958 8.5578 14 6 1.5857 3.5652 8.5227 15 6 1.2379 4.2095 9.6903 16 6 1.7749 3.8019 10.9011 17 6 2.6631 2.7466 10.9512 18 6 3.0239 2.0849 9.7853 19 8 3.8954 1.0483 9.8325 20 6 4.4666 0.7826 11.0244 21 1 4.1621 1.3313 11.9034 22 6 5.4453 -0.1954 11.1219 23 7 6.0021 -0.4549 12.2847 24 14 5.9724 -1.1441 9.6015 25 1 7.0975 -0.4349 8.9409 26 1 6.4097 -2.5074 9.9956 27 1 4.8289 -1.2440 8.6593 28 1 -0.3635 0.5918 0.8401 29 1 -0.3635 0.4317 -0.9326 30 1 -0.3634 -1.0235 0.0925 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.4572 1.9653 -1.2791 34 1 1.7402 3.1789 -1.0573 35 1 1.9464 2.1973 -3.2899 36 1 3.3195 1.6628 -2.2912 37 1 1.9601 0.5563 -2.6007 38 1 0.5678 1.9961 1.3901 39 1 1.9245 3.1271 1.1702 40 1 3.4493 1.5128 2.2736 41 1 2.0926 0.3816 2.4934 42 1 0.9056 2.0731 3.8647 43 1 2.2626 3.2038 3.6443 44 1 3.7867 1.5884 4.7480 45 1 2.4292 0.4582 4.9679 46 1 1.7138 2.9418 6.1069 47 1 1.1608 3.8839 7.5823 48 1 0.5440 5.0366 9.6616 49 1 1.4968 4.3130 11.8109 50 1 3.0777 2.4351 11.8986 51 1 6.6868 -1.1386 12.3528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195238053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:17 Heat of formation + Delta-G solvation = -63.622165 kcal Electronic energy + Delta-G solvation = -28149.801495 eV Core-core repulsion = 24241.847902 eV Total energy + Delta-G solvation = -3907.953593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39116 -39.99265 -39.52536 -38.15524 -36.74125 -34.54018 -34.33490 -32.39537 -32.02822 -30.79082 -30.51663 -27.95013 -27.20009 -25.30313 -24.77457 -23.67287 -22.75103 -22.22727 -21.43682 -20.54315 -19.79765 -19.41317 -17.97924 -17.30779 -17.15576 -16.90922 -16.59031 -16.40772 -15.94740 -15.89339 -15.60658 -15.45320 -15.38617 -14.90856 -14.73927 -14.38533 -14.18191 -14.03359 -14.01056 -13.74807 -13.36044 -13.24745 -13.13581 -12.92545 -12.83586 -12.61796 -12.53947 -12.38410 -12.35932 -12.22337 -12.07676 -12.02934 -11.80068 -11.63243 -11.52925 -11.19362 -10.97448 -10.70671 -10.14416 -9.81238 -9.17140 -9.14293 -8.58369 -6.26887 0.06004 0.65420 1.23682 1.29261 1.57503 2.03519 2.23641 2.29262 2.75662 3.00880 3.03286 3.17246 3.81487 3.90973 3.96682 4.03304 4.03925 4.18039 4.26361 4.30786 4.33582 4.37433 4.45164 4.47698 4.50716 4.56536 4.60803 4.67709 4.72424 4.74596 4.81227 4.84148 4.91264 5.01490 5.05728 5.08784 5.13389 5.14646 5.24368 5.29162 5.32813 5.36327 5.47420 5.48330 5.53997 5.62482 5.69955 5.83947 6.16325 6.19176 6.21883 6.66750 6.78996 7.41336 7.59191 8.52059 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002242 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.325486 B =12488.140166 C =14143.448038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.043 3.957 3 N -0.551 5.551 4 C 0.043 3.957 5 C -0.145 4.145 6 C 0.056 3.944 7 C -0.109 4.109 8 C -0.111 4.111 9 C 0.121 3.879 10 N -0.715 5.715 11 C 0.551 3.449 12 O -0.577 6.577 13 C -0.235 4.235 14 C -0.029 4.029 15 C -0.189 4.189 16 C -0.043 4.043 17 C -0.251 4.251 18 C 0.159 3.841 19 O -0.210 6.210 20 C -0.402 4.402 21 H 0.092 0.908 22 C 0.025 3.975 23 N -0.910 5.910 24 Si 0.956 3.044 25 H -0.277 1.277 26 H -0.265 1.265 27 H -0.267 1.267 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.414 0.586 47 H 0.168 0.832 48 H 0.168 0.832 49 H 0.151 0.849 50 H 0.114 0.886 51 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.563 10.391 -25.919 31.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.085 4.085 3 N -0.275 5.275 4 C -0.084 4.084 5 C -0.202 4.202 6 C -0.071 4.071 7 C -0.148 4.148 8 C -0.149 4.149 9 C -0.003 4.003 10 N -0.370 5.370 11 C 0.341 3.659 12 O -0.457 6.457 13 C -0.239 4.239 14 C -0.048 4.048 15 C -0.207 4.207 16 C -0.061 4.061 17 C -0.271 4.271 18 C 0.106 3.894 19 O -0.115 6.115 20 C -0.478 4.478 21 H 0.109 0.891 22 C -0.175 4.175 23 N -0.550 5.550 24 Si 0.780 3.220 25 H -0.202 1.202 26 H -0.189 1.189 27 H -0.192 1.192 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.253 0.747 47 H 0.185 0.815 48 H 0.186 0.814 49 H 0.169 0.831 50 H 0.132 0.868 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.248 9.415 -26.007 31.113 hybrid contribution -0.251 -0.601 0.347 0.738 sum -14.499 8.814 -25.660 30.763 Atomic orbital electron populations 1.22364 0.97652 1.02698 1.02001 1.22213 0.93390 0.90193 1.02714 1.62263 1.59988 1.02673 1.02564 1.22178 0.97734 0.98196 0.90293 1.21741 1.00842 1.01085 0.96561 1.22117 0.98035 0.98350 0.88636 1.21433 1.00964 0.99632 0.92741 1.21630 1.00928 1.00700 0.91674 1.21338 0.99315 0.96255 0.83357 1.45650 1.48588 1.37285 1.05429 1.18443 0.80168 0.82769 0.84509 1.90842 1.36622 1.30868 1.87373 1.19326 1.09584 1.04939 0.90079 1.21367 0.92125 0.90682 1.00579 1.21250 1.04674 1.03671 0.91117 1.21455 0.91889 0.92667 1.00068 1.21332 1.06018 1.02309 0.97405 1.19804 0.88829 0.86388 0.94357 1.83771 1.51353 1.43009 1.33323 1.20892 1.19954 1.21859 0.85118 0.89058 1.25042 0.95105 0.97387 0.99985 1.69679 1.27156 1.33485 1.24708 0.85413 0.79176 0.77990 0.79451 1.20236 1.18950 1.19190 0.92471 0.92124 0.91749 0.90621 0.91054 0.93810 0.90697 0.91294 0.92822 0.93011 0.93681 0.90166 0.91963 0.92178 0.89728 0.89532 0.93448 0.93446 0.74738 0.81465 0.81449 0.83130 0.86768 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 9.22 71.98 0.66 -1.46 16 2 C 0.04 0.57 5.71 86.30 0.49 1.06 16 3 N -0.55 -7.70 4.67 -896.25 -4.19 -11.89 16 4 C 0.04 0.49 5.50 86.30 0.48 0.97 16 5 C -0.14 -1.53 9.83 71.98 0.71 -0.82 16 6 C 0.06 0.70 4.79 86.30 0.41 1.11 16 7 C -0.11 -1.63 5.15 30.60 0.16 -1.47 16 8 C -0.11 -1.59 5.33 30.60 0.16 -1.42 16 9 C 0.12 2.98 5.67 86.38 0.49 3.47 16 10 N -0.71 -19.34 5.51 -466.27 -2.57 -21.91 16 11 C 0.55 22.43 7.76 86.70 0.67 23.10 16 12 O -0.58 -30.47 15.17 16.88 0.26 -30.21 16 13 C -0.23 -9.28 5.89 -19.99 -0.12 -9.40 16 14 C -0.03 -0.77 9.53 22.52 0.21 -0.56 16 15 C -0.19 -4.58 10.03 22.25 0.22 -4.36 16 16 C -0.04 -1.30 10.03 22.30 0.22 -1.08 16 17 C -0.25 -10.78 9.16 22.36 0.20 -10.58 16 18 C 0.16 7.81 6.66 22.91 0.15 7.97 16 19 O -0.21 -12.47 6.67 0.90 0.01 -12.46 16 20 C -0.40 -24.91 9.95 67.93 0.68 -24.24 16 21 H 0.09 5.71 5.44 -2.91 -0.02 5.69 16 22 C 0.03 1.54 5.49 84.85 0.47 2.01 16 23 N -0.91 -56.28 13.96 21.62 0.30 -55.98 16 24 Si 0.96 51.77 28.62 68.60 1.96 53.73 16 25 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 26 H -0.26 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.27 -15.61 7.11 99.48 0.71 -14.90 16 28 H 0.06 0.67 6.17 -2.39 -0.01 0.65 16 29 H 0.06 0.63 6.44 -2.38 -0.02 0.62 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.08 0.98 6.81 -2.39 -0.02 0.97 16 32 H 0.07 1.06 6.26 -2.39 -0.01 1.04 16 33 H 0.04 0.46 5.86 -2.39 -0.01 0.44 16 34 H 0.07 0.78 7.83 -2.39 -0.02 0.77 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.05 0.55 6.97 -2.39 -0.02 0.54 16 38 H 0.05 0.51 6.07 -2.39 -0.01 0.50 16 39 H 0.08 0.90 7.87 -2.39 -0.02 0.88 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 0.98 6.46 -2.39 -0.02 0.96 16 42 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.41 7.41 6.50 -92.71 -0.60 6.81 16 47 H 0.17 2.62 6.40 -2.91 -0.02 2.60 16 48 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 49 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 50 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 51 H 0.29 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -81.43 401.91 2.38 -79.05 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.33 Total: 15.37 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 6.28 Total: -15.70 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -6.45 Total: -89.78 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: 0.26 Total: -42.68 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 1.96 Total: 53.73 kcal Total: -81.43 2.38 -79.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195238053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.424 kcal (2) G-P(sol) polarization free energy of solvation -81.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds