Wall clock time and date at job start Tue Mar 31 2020 18:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.46920 * 2 1 4 4 C 1.46900 * 110.99934 * 297.70939 * 3 2 1 5 5 C 1.50698 * 109.47176 * 294.86627 * 4 3 2 6 6 H 1.08001 * 120.00425 * 2.72247 * 5 4 3 7 7 C 1.37881 * 119.99974 * 182.72309 * 5 4 3 8 8 N 1.31517 * 119.99863 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00108 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47242 * 89.99932 * 9 7 5 11 11 H 1.48501 * 109.47028 * 210.00389 * 9 7 5 12 12 H 1.48504 * 109.47173 * 329.99823 * 9 7 5 13 13 C 1.46897 * 110.99991 * 61.66330 * 3 2 1 14 14 H 1.08996 * 109.47294 * 300.80610 * 13 3 2 15 15 C 1.52999 * 109.46987 * 180.80587 * 13 3 2 16 16 C 1.50706 * 109.47250 * 60.80738 * 13 3 2 17 17 O 1.21280 * 119.99567 * 28.36748 * 16 13 3 18 18 N 1.34770 * 119.99916 * 208.37462 * 16 13 3 19 19 C 1.46506 * 120.00160 * 179.97438 * 18 16 13 20 20 C 1.52995 * 109.47436 * 179.97438 * 19 18 16 21 21 O 1.42905 * 109.46866 * 64.99898 * 20 19 18 22 22 C 1.35905 * 116.99763 * 180.02562 * 21 20 19 23 23 C 1.38751 * 120.05431 * 0.02562 * 22 21 20 24 24 C 1.38128 * 119.94274 * 179.97438 * 23 22 21 25 25 C 1.38288 * 120.05156 * 359.75363 * 24 23 22 26 26 C 1.38242 * 120.11633 * 0.50638 * 25 24 23 27 27 C 1.50695 * 119.97454 * 179.77170 * 26 25 24 28 28 C 1.38172 * 120.05111 * 359.49086 * 26 25 24 29 29 H 1.09004 * 109.47134 * 63.37693 * 1 2 3 30 30 H 1.09004 * 109.47181 * 183.37202 * 1 2 3 31 31 H 1.08998 * 109.47157 * 303.37440 * 1 2 3 32 32 H 1.09002 * 109.47052 * 239.99898 * 2 1 3 33 33 H 1.08998 * 109.46920 * 119.99905 * 2 1 3 34 34 H 1.08994 * 109.47424 * 54.86985 * 4 3 2 35 35 H 1.09003 * 109.47096 * 174.86852 * 4 3 2 36 36 H 0.96996 * 119.99900 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.46907 * 179.97438 * 15 13 3 38 38 H 1.08999 * 109.47415 * 299.99691 * 15 13 3 39 39 H 1.08998 * 109.47070 * 60.00438 * 15 13 3 40 40 H 0.97004 * 120.00206 * 359.97438 * 18 16 13 41 41 H 1.09005 * 109.46989 * 59.99493 * 19 18 16 42 42 H 1.09004 * 109.46724 * 299.99926 * 19 18 16 43 43 H 1.08995 * 109.47132 * 305.00224 * 20 19 18 44 44 H 1.08992 * 109.47416 * 185.00016 * 20 19 18 45 45 H 1.08001 * 120.03290 * 359.96483 * 23 22 21 46 46 H 1.07999 * 119.97052 * 180.02562 * 24 23 22 47 47 H 1.08004 * 119.94252 * 180.27699 * 25 24 23 48 48 H 1.09004 * 109.46633 * 269.72176 * 27 26 25 49 49 H 1.08999 * 109.47226 * 29.71842 * 27 26 25 50 50 H 1.09001 * 109.47420 * 149.72084 * 27 26 25 51 51 H 1.07994 * 120.02542 * 180.23566 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5939 2.0939 -1.2142 5 6 2.2445 1.4632 -2.4183 6 1 2.8730 0.5931 -2.2989 7 6 2.0374 1.9971 -3.6726 8 7 2.6048 1.4463 -4.7235 9 14 0.9510 3.5025 -3.8792 10 1 1.7790 4.7299 -3.7656 11 1 0.3019 3.4650 -5.2143 12 1 -0.0919 3.5092 -2.8219 13 6 1.5814 2.0983 1.2071 14 1 0.4924 2.1002 1.2527 15 6 2.0926 3.5396 1.1615 16 6 2.1341 1.4076 2.4272 17 8 3.1762 0.7914 2.3553 18 7 1.4702 1.4747 3.5982 19 6 2.0071 0.8029 4.7842 20 6 1.0687 1.0344 5.9702 21 8 -0.1873 0.4028 5.7141 22 6 -1.1413 0.5141 6.6756 23 6 -0.8740 1.2173 7.8415 24 6 -1.8455 1.3294 8.8170 25 6 -3.0852 0.7459 8.6301 26 6 -3.3522 0.0402 7.4717 27 6 -4.7025 -0.5987 7.2736 28 6 -2.3838 -0.0748 6.4929 29 1 -0.3634 0.4605 -0.9187 30 1 -0.3634 -1.0259 0.0604 31 1 -0.3633 0.5653 0.8582 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5102 2.0296 -1.3113 35 1 1.8912 3.1404 -1.1470 36 1 2.4588 1.8217 -5.6059 37 1 1.7669 4.0691 2.0571 38 1 3.1816 3.5377 1.1160 39 1 1.6928 4.0392 0.2791 40 1 0.6369 1.9679 3.6557 41 1 2.9923 1.2077 5.0164 42 1 2.0904 -0.2664 4.5896 43 1 0.9157 2.1046 6.1089 44 1 1.5112 0.6108 6.8717 45 1 0.0927 1.6764 7.9863 46 1 -1.6381 1.8770 9.7245 47 1 -3.8450 0.8385 9.3921 48 1 -4.6846 -1.6152 7.6670 49 1 -5.4599 -0.0185 7.8007 50 1 -4.9397 -0.6248 6.2101 51 1 -2.5941 -0.6229 5.5865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267043210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:21 Heat of formation + Delta-G solvation = -64.995524 kcal Electronic energy + Delta-G solvation = -28772.757975 eV Core-core repulsion = 24864.744829 eV Total energy + Delta-G solvation = -3908.013146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35530 -40.95761 -38.91268 -38.40502 -35.85144 -34.71352 -33.39680 -33.20059 -31.74161 -30.99310 -29.89912 -28.41511 -27.84973 -25.67496 -24.48507 -23.92005 -23.46222 -22.11050 -21.72815 -20.42920 -18.98025 -18.84423 -18.11030 -17.59653 -17.06278 -16.88201 -16.74732 -16.64786 -16.23555 -16.00313 -15.61849 -15.20804 -14.92354 -14.77814 -14.53708 -14.49101 -14.24743 -14.08712 -13.93923 -13.72499 -13.57683 -13.27194 -13.06101 -12.99946 -12.94562 -12.68481 -12.61494 -12.54087 -12.40748 -12.38245 -12.30170 -11.86282 -11.84687 -11.70564 -11.56148 -11.32908 -10.76095 -10.63144 -10.12579 -9.72292 -9.13294 -8.93301 -8.24374 -6.27377 0.38207 0.50887 1.36522 1.38887 1.49176 1.63622 2.06537 2.18282 2.37274 2.81877 3.07361 3.21658 3.65514 3.82287 3.91801 3.99187 4.04576 4.04998 4.12782 4.18585 4.23214 4.30889 4.34942 4.41211 4.44409 4.52292 4.56307 4.58452 4.63256 4.76546 4.79646 4.82365 4.89267 4.90652 4.94140 5.03519 5.05591 5.19464 5.22928 5.24668 5.36380 5.37832 5.41417 5.51651 5.59037 5.68091 5.87972 5.98486 6.30207 6.45921 6.50892 6.70850 6.78349 7.29067 7.35022 8.92806 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.002257 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.457629 B =12402.774455 C =13088.681919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 N -0.528 5.528 4 C 0.170 3.830 5 C -0.513 4.513 6 H 0.028 0.972 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.948 3.052 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.242 1.242 13 C 0.057 3.943 14 H 0.075 0.925 15 C -0.139 4.139 16 C 0.525 3.475 17 O -0.563 6.563 18 N -0.717 5.717 19 C 0.123 3.877 20 C 0.054 3.946 21 O -0.330 6.330 22 C 0.118 3.882 23 C -0.221 4.221 24 C -0.081 4.081 25 C -0.168 4.168 26 C -0.056 4.056 27 C -0.116 4.116 28 C -0.177 4.177 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.001 0.999 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.413 0.587 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.142 0.858 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.068 0.932 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 3.259 32.517 35.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.066 4.066 3 N -0.253 5.253 4 C 0.043 3.957 5 C -0.551 4.551 6 H 0.047 0.953 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.166 1.166 13 C -0.055 4.055 14 H 0.093 0.907 15 C -0.197 4.197 16 C 0.311 3.689 17 O -0.441 6.441 18 N -0.371 5.371 19 C -0.001 4.001 20 C -0.021 4.021 21 O -0.245 6.245 22 C 0.073 3.927 23 C -0.240 4.240 24 C -0.099 4.099 25 C -0.186 4.186 26 C -0.056 4.056 27 C -0.173 4.173 28 C -0.195 4.195 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.019 0.981 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.249 0.751 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.159 0.841 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.087 0.913 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.453 2.711 32.126 34.934 hybrid contribution -0.899 0.345 -0.855 1.287 sum -14.352 3.056 31.271 34.543 Atomic orbital electron populations 1.22280 0.96963 1.02668 1.01633 1.21899 0.93684 0.90270 1.00726 1.61849 1.60246 1.02108 1.01086 1.20070 0.93749 0.94779 0.87058 1.21240 1.29016 1.13517 0.91352 0.95327 1.25897 0.97397 1.00758 0.95195 1.70074 1.46383 1.43310 0.99523 0.85703 0.79725 0.79274 0.78210 1.18846 1.21044 1.16551 1.21720 0.98878 0.95719 0.89132 0.90728 1.21850 1.01826 0.92213 1.03805 1.20629 0.83990 0.79598 0.84659 1.90681 1.24931 1.43154 1.85286 1.45857 1.27269 1.55075 1.08908 1.21449 0.96950 0.98215 0.83450 1.23175 0.81652 0.99122 0.98182 1.86105 1.23067 1.72957 1.42336 1.19167 0.89065 0.95922 0.88538 1.21501 1.02468 1.05263 0.94760 1.21291 0.92548 0.97266 0.98765 1.21278 0.98346 1.00793 0.98202 1.20022 0.96114 0.96242 0.93269 1.20871 0.92186 1.01046 1.03151 1.20502 0.92091 1.05289 1.01655 0.93236 0.91243 0.91582 0.93178 0.92172 0.98109 0.94081 0.92553 0.88562 0.93009 0.91174 0.75055 0.88453 0.92172 0.89093 0.88264 0.83651 0.83447 0.84066 0.90184 0.89937 0.91306 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.14 9.24 71.98 0.66 -5.47 16 2 C 0.06 2.65 5.53 86.31 0.48 3.13 16 3 N -0.53 -23.12 4.29 -879.92 -3.78 -26.90 16 4 C 0.17 8.11 3.29 85.56 0.28 8.40 16 5 C -0.51 -30.46 9.09 25.60 0.23 -30.23 16 6 H 0.03 1.94 7.19 -2.91 -0.02 1.92 16 7 C 0.00 0.24 5.47 84.66 0.46 0.70 16 8 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 9 Si 0.95 43.72 27.41 68.60 1.88 45.60 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.24 -10.09 6.62 99.48 0.66 -9.43 16 13 C 0.06 1.88 2.14 44.17 0.09 1.97 16 14 H 0.08 2.12 6.23 -2.39 -0.01 2.10 16 15 C -0.14 -4.01 8.81 71.98 0.63 -3.38 16 16 C 0.53 16.62 5.96 87.66 0.52 17.15 16 17 O -0.56 -23.16 15.67 -3.03 -0.05 -23.21 16 18 N -0.72 -15.49 5.50 -463.05 -2.55 -18.04 16 19 C 0.12 2.21 6.06 86.38 0.52 2.73 16 20 C 0.05 0.65 4.87 71.98 0.35 1.00 16 21 O -0.33 -5.96 10.08 -92.48 -0.93 -6.89 16 22 C 0.12 2.05 6.69 22.50 0.15 2.20 16 23 C -0.22 -2.92 9.04 22.37 0.20 -2.72 16 24 C -0.08 -0.93 10.04 22.26 0.22 -0.70 16 25 C -0.17 -2.04 9.70 22.28 0.22 -1.83 16 26 C -0.06 -0.81 5.88 -19.88 -0.12 -0.93 16 27 C -0.12 -1.13 10.01 71.23 0.71 -0.42 16 28 C -0.18 -3.14 9.64 22.37 0.22 -2.92 16 29 H 0.05 1.88 6.52 -2.38 -0.02 1.87 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 1.95 6.25 -2.39 -0.01 1.94 16 32 H 0.05 2.48 6.68 -2.39 -0.02 2.47 16 33 H 0.06 2.52 6.43 -2.39 -0.02 2.50 16 34 H 0.00 0.06 5.43 -2.39 -0.01 0.05 16 35 H 0.04 1.89 5.01 -2.39 -0.01 1.87 16 36 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 37 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 2.08 6.14 -2.39 -0.01 2.07 16 40 H 0.41 6.87 8.47 -92.71 -0.79 6.09 16 41 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 0.75 7.66 -2.39 -0.02 0.73 16 44 H 0.10 0.82 7.66 -2.39 -0.02 0.81 16 45 H 0.15 1.24 6.30 -2.91 -0.02 1.23 16 46 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 47 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 48 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 50 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 51 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -79.47 402.68 0.82 -78.65 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.10 Total: 22.73 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 5.85 Total: -11.32 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -6.02 Total: -105.56 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.98 Total: -30.10 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Total: -79.47 0.82 -78.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267043210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.652 kcal (2) G-P(sol) polarization free energy of solvation -79.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds