Wall clock time and date at job start Tue Mar 31 2020 18:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47223 * 2 1 4 4 C 1.46896 * 111.00072 * 73.23430 * 3 2 1 5 5 C 1.50701 * 109.47127 * 285.44878 * 4 3 2 6 6 H 1.08001 * 119.99832 * 358.23686 * 5 4 3 7 7 C 1.37880 * 120.00246 * 178.24208 * 5 4 3 8 8 N 1.31515 * 119.99670 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00083 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47061 * 90.00013 * 9 7 5 11 11 H 1.48498 * 109.47001 * 209.99646 * 9 7 5 12 12 H 1.48500 * 109.47315 * 330.00089 * 9 7 5 13 13 C 1.46906 * 110.99853 * 197.18701 * 3 2 1 14 14 H 1.09000 * 109.47011 * 186.04518 * 13 3 2 15 15 C 1.52995 * 109.47259 * 306.04592 * 13 3 2 16 16 C 1.50702 * 109.47104 * 66.04703 * 13 3 2 17 17 O 1.21285 * 119.99607 * 359.97438 * 16 13 3 18 18 N 1.34767 * 119.99842 * 179.97438 * 16 13 3 19 19 C 1.46504 * 119.99971 * 179.97438 * 18 16 13 20 20 H 1.09003 * 109.47087 * 35.00038 * 19 18 16 21 21 C 1.53002 * 109.47191 * 275.00052 * 19 18 16 22 22 C 1.50703 * 109.47240 * 154.99761 * 19 18 16 23 23 C 1.38166 * 120.02517 * 24.98146 * 22 19 18 24 24 C 1.38245 * 120.05058 * 180.02562 * 23 22 19 25 25 C 1.38284 * 120.11485 * 0.02562 * 24 23 22 26 26 C 1.38120 * 120.05481 * 359.97438 * 25 24 23 27 27 C 1.38706 * 120.02642 * 204.99884 * 22 19 18 28 28 O 1.35895 * 120.06148 * 0.02562 * 27 22 19 29 29 C 1.42904 * 117.00667 * 179.97438 * 28 27 22 30 30 H 1.09003 * 109.46763 * 288.82716 * 1 2 3 31 31 H 1.09003 * 109.47181 * 48.82436 * 1 2 3 32 32 H 1.08996 * 109.47228 * 168.82497 * 1 2 3 33 33 H 1.08997 * 109.46734 * 239.99786 * 2 1 3 34 34 H 1.09000 * 109.47023 * 120.00022 * 2 1 3 35 35 H 1.08998 * 109.47628 * 45.44621 * 4 3 2 36 36 H 1.09002 * 109.47018 * 165.44969 * 4 3 2 37 37 H 0.96997 * 119.99809 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47310 * 300.00121 * 15 13 3 39 39 H 1.09000 * 109.47170 * 60.00023 * 15 13 3 40 40 H 1.08998 * 109.47243 * 180.02562 * 15 13 3 41 41 H 0.96998 * 120.00756 * 359.97438 * 18 16 13 42 42 H 1.09003 * 109.47094 * 299.99982 * 21 19 18 43 43 H 1.09003 * 109.46927 * 59.99897 * 21 19 18 44 44 H 1.09002 * 109.46963 * 179.97438 * 21 19 18 45 45 H 1.07999 * 119.97361 * 0.02562 * 23 22 19 46 46 H 1.08007 * 119.93904 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.97077 * 180.28059 * 25 24 23 48 48 H 1.08009 * 120.02702 * 180.02562 * 26 25 24 49 49 H 1.08995 * 109.47262 * 179.97438 * 29 28 27 50 50 H 1.09000 * 109.46708 * 299.99829 * 29 28 27 51 51 H 1.08996 * 109.46961 * 59.99450 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8222 2.0131 1.3131 5 6 0.3638 2.3450 1.4970 6 1 -0.3410 2.1385 0.7051 7 6 -0.0709 2.9123 2.6761 8 7 0.7873 3.1633 3.6405 9 14 -1.8786 3.3243 2.9037 10 1 -2.5815 2.1575 3.4953 11 1 -2.0096 4.4930 3.8104 12 1 -2.4819 3.6497 1.5863 13 6 3.4305 1.4445 -0.4053 14 1 3.7978 2.4647 -0.2939 15 6 4.2550 0.5063 0.4784 16 6 3.5578 1.0192 -1.8454 17 8 2.5706 0.6977 -2.4723 18 7 4.7687 0.9962 -2.4366 19 6 4.8926 0.5822 -3.8365 20 1 4.0178 0.9179 -4.3935 21 6 4.9900 -0.9429 -3.9106 22 6 6.1335 1.1945 -4.4335 23 6 7.1892 1.5525 -3.6172 24 6 8.3275 2.1147 -4.1643 25 6 8.4125 2.3207 -5.5290 26 6 7.3599 1.9645 -6.3493 27 6 6.2165 1.3994 -5.8028 28 8 5.1792 1.0489 -6.6077 29 6 5.3342 1.2895 -8.0078 30 1 -0.3633 0.3317 0.9727 31 1 -0.3634 0.6766 -0.7735 32 1 -0.3633 -1.0081 -0.1992 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1398 1.3251 2.0966 36 1 2.4130 2.9274 1.3710 37 1 0.4816 3.5627 4.4699 38 1 4.1629 0.8139 1.5200 39 1 3.8878 -0.5139 0.3670 40 1 5.3018 0.5509 0.1780 41 1 5.5582 1.2537 -1.9355 42 1 5.8648 -1.2786 -3.3537 43 1 4.0924 -1.3857 -3.4788 44 1 5.0817 -1.2509 -4.9522 45 1 7.1250 1.3930 -2.5510 46 1 9.1515 2.3942 -3.5245 47 1 9.3048 2.7558 -5.9544 48 1 7.4269 2.1252 -7.4152 49 1 4.4365 0.9646 -8.5339 50 1 5.4902 2.3547 -8.1783 51 1 6.1942 0.7323 -8.3791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267066391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:31 Heat of formation + Delta-G solvation = -33.102892 kcal Electronic energy + Delta-G solvation = -29617.243325 eV Core-core repulsion = 25710.613147 eV Total energy + Delta-G solvation = -3906.630178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76794 -39.64912 -37.84540 -36.83842 -35.27172 -32.80725 -32.05731 -30.79523 -30.53230 -29.30293 -28.52695 -27.57535 -26.36872 -24.59819 -23.61932 -22.52046 -22.29046 -21.27206 -20.13285 -19.27258 -18.28384 -17.04930 -16.67537 -16.22003 -16.03715 -15.92571 -15.18521 -14.89132 -14.82936 -14.57018 -14.27396 -14.03691 -13.93838 -13.81709 -13.39320 -13.25983 -13.06267 -12.59551 -12.49295 -12.16979 -12.06757 -12.01249 -11.84707 -11.83605 -11.46571 -11.42890 -11.34784 -11.07069 -10.91411 -10.86625 -10.76382 -10.67851 -10.30466 -10.05668 -9.66216 -9.21772 -8.98804 -8.98123 -8.86155 -8.41720 -8.32313 -7.14874 -5.95799 -3.93224 0.98724 1.13622 2.97186 3.09147 3.28461 3.37079 3.43220 3.47157 3.49503 4.34809 4.48994 4.49434 4.66606 4.76996 4.82619 4.95998 4.98334 5.04984 5.14214 5.17696 5.24871 5.31226 5.38642 5.39099 5.49378 5.55843 5.61192 5.73111 5.83858 5.90586 6.00841 6.10196 6.13512 6.19761 6.20158 6.21509 6.33643 6.44173 6.47327 6.56567 6.68698 6.79498 7.07579 7.10299 7.22431 7.41323 7.51021 7.70055 7.93622 8.17742 8.29479 8.59744 8.67403 9.13859 9.68287 11.15091 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.002500 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.696051 B =11197.141414 C =11565.014885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 N -0.514 5.514 4 C 0.194 3.806 5 C -0.500 4.500 6 H 0.075 0.925 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.065 3.935 14 H 0.100 0.900 15 C -0.179 4.179 16 C 0.522 3.478 17 O -0.514 6.514 18 N -0.736 5.736 19 C 0.193 3.807 20 H 0.100 0.900 21 C -0.152 4.152 22 C -0.117 4.117 23 C -0.079 4.079 24 C -0.152 4.152 25 C -0.084 4.084 26 C -0.206 4.206 27 C 0.136 3.864 28 O -0.310 6.310 29 C 0.027 3.973 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.017 0.983 35 H -0.003 1.003 36 H 0.025 0.975 37 H 0.259 0.741 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.394 0.606 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.128 0.872 49 H 0.101 0.899 50 H 0.055 0.945 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.065 -5.124 -19.508 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 N -0.238 5.238 4 C 0.069 3.931 5 C -0.538 4.538 6 H 0.093 0.907 7 C -0.149 4.149 8 N -0.543 5.543 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.197 1.197 13 C -0.048 4.048 14 H 0.118 0.882 15 C -0.238 4.238 16 C 0.308 3.692 17 O -0.387 6.387 18 N -0.392 5.392 19 C 0.088 3.912 20 H 0.118 0.882 21 C -0.211 4.211 22 C -0.118 4.118 23 C -0.097 4.097 24 C -0.170 4.170 25 C -0.102 4.102 26 C -0.225 4.225 27 C 0.090 3.910 28 O -0.223 6.223 29 C -0.068 4.068 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.015 0.985 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.230 0.770 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.146 0.854 49 H 0.119 0.881 50 H 0.074 0.926 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.827 -5.102 -20.080 26.690 hybrid contribution 0.295 0.174 0.843 0.910 sum 17.121 -4.927 -19.237 26.220 Atomic orbital electron populations 1.21977 0.95221 0.98588 1.04179 1.21899 0.96747 0.89041 0.98256 1.62098 1.11399 1.17346 1.32960 1.19805 0.97734 0.93420 0.82108 1.21417 0.93339 1.38837 1.00221 0.90689 1.24986 0.97681 0.96108 0.96078 1.69959 1.33991 1.44474 1.05862 0.86553 0.85369 0.77824 0.78062 1.20790 1.21426 1.19709 1.21651 0.92706 1.00235 0.90254 0.88193 1.22426 0.99068 1.00587 1.01733 1.20887 0.82269 0.76609 0.89432 1.90663 1.36705 1.46132 1.65192 1.46299 1.09787 1.70770 1.12386 1.19476 0.95446 0.93891 0.82355 0.88167 1.22100 1.02326 0.94537 1.02122 1.19349 0.97508 1.04272 0.90649 1.20765 0.92267 0.97255 0.99421 1.21041 0.98516 1.02203 0.95229 1.20939 0.97817 0.97873 0.93566 1.21218 0.94613 1.06042 1.00578 1.18736 0.87192 0.95031 0.89992 1.86131 1.38433 1.79134 1.18636 1.23078 1.03476 1.01150 0.79086 0.89946 0.92527 0.95324 0.92098 0.96484 0.98520 0.95725 0.93120 0.90837 0.92166 0.92918 0.76976 0.92682 0.91569 0.91731 0.85415 0.85654 0.85791 0.85379 0.88054 0.92625 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C 0.07 1.46 4.05 -3.82 -0.02 1.44 16 3 N -0.51 -11.52 4.16 -229.48 -0.96 -12.48 16 4 C 0.19 5.00 4.11 -4.98 -0.02 4.98 16 5 C -0.50 -14.00 7.09 -34.44 -0.24 -14.24 16 6 H 0.08 2.11 5.60 -52.49 -0.29 1.81 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.16 2.72 -68.86 -0.19 0.97 16 14 H 0.10 1.75 7.84 -51.93 -0.41 1.34 16 15 C -0.18 -2.73 8.42 37.15 0.31 -2.42 16 16 C 0.52 8.98 6.67 -10.99 -0.07 8.91 16 17 O -0.51 -10.73 14.16 5.55 0.08 -10.66 16 18 N -0.74 -9.63 4.89 -54.93 -0.27 -9.90 16 19 C 0.19 2.45 2.51 -69.08 -0.17 2.28 16 20 H 0.10 1.55 7.13 -51.93 -0.37 1.18 16 21 C -0.15 -1.78 9.47 37.16 0.35 -1.43 16 22 C -0.12 -1.28 5.07 -104.47 -0.53 -1.81 16 23 C -0.08 -0.73 9.23 -39.61 -0.37 -1.09 16 24 C -0.15 -1.23 10.04 -39.56 -0.40 -1.62 16 25 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 26 C -0.21 -1.75 9.04 -39.43 -0.36 -2.11 16 27 C 0.14 1.44 6.66 -39.22 -0.26 1.18 16 28 O -0.31 -3.27 9.63 -19.41 -0.19 -3.46 16 29 C 0.03 0.17 9.81 101.05 0.99 1.16 16 30 H 0.08 1.95 5.76 -51.93 -0.30 1.65 16 31 H 0.06 1.28 7.79 -51.93 -0.40 0.88 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.26 5.82 -51.93 -0.30 0.96 16 34 H 0.02 0.36 6.97 -51.93 -0.36 0.00 16 35 H 0.00 -0.08 7.17 -51.93 -0.37 -0.45 16 36 H 0.02 0.67 7.76 -51.93 -0.40 0.27 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.07 1.23 7.13 -51.93 -0.37 0.86 16 39 H 0.06 0.94 6.72 -51.93 -0.35 0.59 16 40 H 0.05 0.61 7.57 -51.93 -0.39 0.22 16 41 H 0.39 4.11 5.63 -40.82 -0.23 3.88 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.13 0.97 6.07 -52.49 -0.32 0.65 16 46 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.13 0.81 6.30 -52.48 -0.33 0.48 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 51 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -33.49 397.58 -8.87 -42.36 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.09 Total: 3.43 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.15 Total: -6.24 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.49 Total: -48.36 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.11 Total: -14.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.49 -8.87 -42.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267066391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.257 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds