Wall clock time and date at job start Tue Mar 31 2020 18:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47223 * 2 1 4 4 C 1.46896 * 111.00072 * 73.23430 * 3 2 1 5 5 C 1.50701 * 109.47127 * 285.44878 * 4 3 2 6 6 H 1.08001 * 119.99832 * 358.23686 * 5 4 3 7 7 C 1.37880 * 120.00246 * 178.24208 * 5 4 3 8 8 N 1.31515 * 119.99670 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00083 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47061 * 90.00013 * 9 7 5 11 11 H 1.48498 * 109.47001 * 209.99646 * 9 7 5 12 12 H 1.48500 * 109.47315 * 330.00089 * 9 7 5 13 13 C 1.46906 * 110.99853 * 197.18701 * 3 2 1 14 14 H 1.09000 * 109.47011 * 186.04518 * 13 3 2 15 15 C 1.52995 * 109.47259 * 306.04592 * 13 3 2 16 16 C 1.50702 * 109.47104 * 66.04703 * 13 3 2 17 17 O 1.21285 * 119.99607 * 359.97438 * 16 13 3 18 18 N 1.34767 * 119.99842 * 179.97438 * 16 13 3 19 19 C 1.46504 * 119.99971 * 179.97438 * 18 16 13 20 20 H 1.09003 * 109.47087 * 35.00038 * 19 18 16 21 21 C 1.53002 * 109.47191 * 275.00052 * 19 18 16 22 22 C 1.50703 * 109.47240 * 154.99761 * 19 18 16 23 23 C 1.38166 * 120.02517 * 24.98146 * 22 19 18 24 24 C 1.38245 * 120.05058 * 180.02562 * 23 22 19 25 25 C 1.38284 * 120.11485 * 0.02562 * 24 23 22 26 26 C 1.38120 * 120.05481 * 359.97438 * 25 24 23 27 27 C 1.38706 * 120.02642 * 204.99884 * 22 19 18 28 28 O 1.35895 * 120.06148 * 0.02562 * 27 22 19 29 29 C 1.42904 * 117.00667 * 179.97438 * 28 27 22 30 30 H 1.09003 * 109.46763 * 288.82716 * 1 2 3 31 31 H 1.09003 * 109.47181 * 48.82436 * 1 2 3 32 32 H 1.08996 * 109.47228 * 168.82497 * 1 2 3 33 33 H 1.08997 * 109.46734 * 239.99786 * 2 1 3 34 34 H 1.09000 * 109.47023 * 120.00022 * 2 1 3 35 35 H 1.08998 * 109.47628 * 45.44621 * 4 3 2 36 36 H 1.09002 * 109.47018 * 165.44969 * 4 3 2 37 37 H 0.96997 * 119.99809 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47310 * 300.00121 * 15 13 3 39 39 H 1.09000 * 109.47170 * 60.00023 * 15 13 3 40 40 H 1.08998 * 109.47243 * 180.02562 * 15 13 3 41 41 H 0.96998 * 120.00756 * 359.97438 * 18 16 13 42 42 H 1.09003 * 109.47094 * 299.99982 * 21 19 18 43 43 H 1.09003 * 109.46927 * 59.99897 * 21 19 18 44 44 H 1.09002 * 109.46963 * 179.97438 * 21 19 18 45 45 H 1.07999 * 119.97361 * 0.02562 * 23 22 19 46 46 H 1.08007 * 119.93904 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.97077 * 180.28059 * 25 24 23 48 48 H 1.08009 * 120.02702 * 180.02562 * 26 25 24 49 49 H 1.08995 * 109.47262 * 179.97438 * 29 28 27 50 50 H 1.09000 * 109.46708 * 299.99829 * 29 28 27 51 51 H 1.08996 * 109.46961 * 59.99450 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8222 2.0131 1.3131 5 6 0.3638 2.3450 1.4970 6 1 -0.3410 2.1385 0.7051 7 6 -0.0709 2.9123 2.6761 8 7 0.7873 3.1633 3.6405 9 14 -1.8786 3.3243 2.9037 10 1 -2.5815 2.1575 3.4953 11 1 -2.0096 4.4930 3.8104 12 1 -2.4819 3.6497 1.5863 13 6 3.4305 1.4445 -0.4053 14 1 3.7978 2.4647 -0.2939 15 6 4.2550 0.5063 0.4784 16 6 3.5578 1.0192 -1.8454 17 8 2.5706 0.6977 -2.4723 18 7 4.7687 0.9962 -2.4366 19 6 4.8926 0.5822 -3.8365 20 1 4.0178 0.9179 -4.3935 21 6 4.9900 -0.9429 -3.9106 22 6 6.1335 1.1945 -4.4335 23 6 7.1892 1.5525 -3.6172 24 6 8.3275 2.1147 -4.1643 25 6 8.4125 2.3207 -5.5290 26 6 7.3599 1.9645 -6.3493 27 6 6.2165 1.3994 -5.8028 28 8 5.1792 1.0489 -6.6077 29 6 5.3342 1.2895 -8.0078 30 1 -0.3633 0.3317 0.9727 31 1 -0.3634 0.6766 -0.7735 32 1 -0.3633 -1.0081 -0.1992 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1398 1.3251 2.0966 36 1 2.4130 2.9274 1.3710 37 1 0.4816 3.5627 4.4699 38 1 4.1629 0.8139 1.5200 39 1 3.8878 -0.5139 0.3670 40 1 5.3018 0.5509 0.1780 41 1 5.5582 1.2537 -1.9355 42 1 5.8648 -1.2786 -3.3537 43 1 4.0924 -1.3857 -3.4788 44 1 5.0817 -1.2509 -4.9522 45 1 7.1250 1.3930 -2.5510 46 1 9.1515 2.3942 -3.5245 47 1 9.3048 2.7558 -5.9544 48 1 7.4269 2.1252 -7.4152 49 1 4.4365 0.9646 -8.5339 50 1 5.4902 2.3547 -8.1783 51 1 6.1942 0.7323 -8.3791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267066391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:30 Heat of formation + Delta-G solvation = -55.176379 kcal Electronic energy + Delta-G solvation = -29618.200503 eV Core-core repulsion = 25710.613147 eV Total energy + Delta-G solvation = -3907.587356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63467 -40.87088 -38.78345 -38.18666 -36.43160 -34.78837 -33.50504 -32.06406 -31.18343 -30.52921 -30.01604 -28.24366 -28.11375 -25.86813 -24.69355 -24.22979 -23.27585 -22.38596 -21.37209 -20.70778 -19.18331 -18.63196 -17.81347 -17.53526 -16.99153 -16.67950 -16.50325 -16.26071 -16.19251 -15.78455 -15.62273 -15.42866 -15.22231 -14.67497 -14.55763 -14.46198 -14.18631 -14.12465 -13.56364 -13.39676 -13.27331 -13.19374 -13.13433 -12.93012 -12.79432 -12.70954 -12.67035 -12.64460 -12.46181 -12.14553 -12.10057 -11.99896 -11.92513 -11.63324 -11.45716 -11.05235 -10.54565 -10.47222 -10.16606 -9.82140 -9.11112 -8.93461 -8.13500 -6.18025 0.32056 0.47948 1.42316 1.42832 1.54630 1.70757 2.08701 2.39122 2.45056 2.79342 3.18466 3.32779 3.56489 3.79952 3.88916 4.07673 4.10673 4.16125 4.21758 4.32830 4.34168 4.39364 4.39935 4.45610 4.51726 4.59571 4.64898 4.68170 4.73576 4.74475 4.77582 4.85468 4.93224 5.01437 5.05298 5.12581 5.19253 5.22172 5.26971 5.29847 5.41638 5.42603 5.55461 5.62985 5.66984 5.77105 5.84849 6.13629 6.42535 6.43530 6.50950 6.73930 6.95095 7.33651 7.47914 8.96916 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.002500 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.696051 B =11197.141414 C =11565.014885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.074 3.926 3 N -0.531 5.531 4 C 0.214 3.786 5 C -0.512 4.512 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.058 3.942 14 H 0.104 0.896 15 C -0.168 4.168 16 C 0.527 3.473 17 O -0.556 6.556 18 N -0.714 5.714 19 C 0.199 3.801 20 H 0.066 0.934 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.085 4.085 24 C -0.154 4.154 25 C -0.082 4.082 26 C -0.209 4.209 27 C 0.119 3.881 28 O -0.337 6.337 29 C 0.019 3.981 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.017 0.983 35 H -0.024 1.024 36 H 0.005 0.995 37 H 0.262 0.738 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.410 0.590 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.142 0.858 46 H 0.149 0.851 47 H 0.152 0.848 48 H 0.149 0.851 49 H 0.110 0.890 50 H 0.063 0.937 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.035 -5.172 -20.584 29.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 N -0.256 5.256 4 C 0.088 3.912 5 C -0.551 4.551 6 H 0.088 0.912 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.195 1.195 13 C -0.054 4.054 14 H 0.122 0.878 15 C -0.227 4.227 16 C 0.313 3.687 17 O -0.433 6.433 18 N -0.370 5.370 19 C 0.094 3.906 20 H 0.085 0.915 21 C -0.202 4.202 22 C -0.141 4.141 23 C -0.103 4.103 24 C -0.172 4.172 25 C -0.100 4.100 26 C -0.228 4.228 27 C 0.073 3.927 28 O -0.251 6.251 29 C -0.075 4.075 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.035 0.965 35 H -0.006 1.006 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.249 0.751 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.159 0.841 46 H 0.167 0.833 47 H 0.169 0.831 48 H 0.166 0.834 49 H 0.129 0.871 50 H 0.082 0.918 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.853 -5.153 -21.175 28.816 hybrid contribution -0.204 0.206 1.059 1.098 sum 18.649 -4.947 -20.116 27.873 Atomic orbital electron populations 1.21871 0.95558 0.99789 1.02116 1.21849 0.96469 0.88551 0.98462 1.61948 1.14823 1.18014 1.30766 1.19419 0.96298 0.92227 0.83280 1.21700 0.94430 1.38728 1.00227 0.91238 1.25768 1.01896 0.95978 0.95795 1.70065 1.35894 1.45244 1.06333 0.85558 0.80321 0.77837 0.78010 1.19908 1.20832 1.19452 1.21748 0.90805 1.01405 0.91438 0.87823 1.22312 1.01139 0.99293 0.99959 1.20662 0.82887 0.76267 0.88868 1.90649 1.38344 1.48407 1.65892 1.46071 1.09000 1.69199 1.12755 1.19356 0.95423 0.94601 0.81208 0.91544 1.22010 1.01930 0.93684 1.02609 1.19287 0.97258 1.06173 0.91356 1.20975 0.92223 0.97165 0.99975 1.21375 0.98633 1.01359 0.95861 1.21348 0.98370 0.96774 0.93538 1.21501 0.94027 1.05366 1.01873 1.18974 0.87957 0.95717 0.90029 1.86096 1.39131 1.79490 1.20419 1.23317 1.04761 1.02054 0.77366 0.92247 0.94143 0.92477 0.91320 0.96465 1.00603 0.97689 0.92932 0.92575 0.92456 0.88589 0.75127 0.90983 0.93680 0.91165 0.84085 0.83293 0.83061 0.83385 0.87129 0.91793 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.94 8.51 71.98 0.61 -5.33 16 2 C 0.07 3.21 4.05 86.30 0.35 3.56 16 3 N -0.53 -24.34 4.16 -879.93 -3.66 -28.01 16 4 C 0.21 11.35 4.11 85.56 0.35 11.70 16 5 C -0.51 -29.37 7.09 25.60 0.18 -29.19 16 6 H 0.07 4.00 5.60 -2.91 -0.02 3.98 16 7 C 0.00 0.18 5.46 84.66 0.46 0.64 16 8 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 9 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 C 0.06 2.11 2.72 44.17 0.12 2.23 16 14 H 0.10 3.62 7.84 -2.39 -0.02 3.60 16 15 C -0.17 -4.96 8.42 71.98 0.61 -4.35 16 16 C 0.53 18.14 6.67 87.66 0.58 18.72 16 17 O -0.56 -23.78 14.16 -3.05 -0.04 -23.82 16 18 N -0.71 -18.12 4.89 -446.08 -2.18 -20.30 16 19 C 0.20 5.03 2.51 44.25 0.11 5.15 16 20 H 0.07 2.15 7.13 -2.39 -0.02 2.14 16 21 C -0.14 -3.32 9.47 71.98 0.68 -2.64 16 22 C -0.14 -2.94 5.07 -19.77 -0.10 -3.04 16 23 C -0.09 -1.39 9.23 22.25 0.21 -1.18 16 24 C -0.15 -2.01 10.04 22.28 0.22 -1.79 16 25 C -0.08 -1.02 10.04 22.25 0.22 -0.80 16 26 C -0.21 -3.10 9.04 22.37 0.20 -2.90 16 27 C 0.12 2.40 6.66 22.51 0.15 2.55 16 28 O -0.34 -7.09 9.63 -92.37 -0.89 -7.98 16 29 C 0.02 0.23 9.81 113.37 1.11 1.34 16 30 H 0.06 2.85 5.76 -2.39 -0.01 2.84 16 31 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.87 5.82 -2.39 -0.01 2.86 16 34 H 0.02 0.74 6.97 -2.39 -0.02 0.72 16 35 H -0.02 -1.34 7.17 -2.39 -0.02 -1.36 16 36 H 0.01 0.28 7.76 -2.39 -0.02 0.26 16 37 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.06 1.87 7.13 -2.39 -0.02 1.85 16 39 H 0.06 1.73 6.72 -2.39 -0.02 1.71 16 40 H 0.10 1.96 7.57 -2.39 -0.02 1.94 16 41 H 0.41 7.72 5.63 -92.71 -0.52 7.20 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.14 1.74 6.07 -2.91 -0.02 1.73 16 46 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 48 H 0.15 1.47 6.30 -2.91 -0.02 1.46 16 49 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 51 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 Total: -1.00 -74.55 397.58 2.02 -72.53 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.41 Total: 21.25 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.08 Total: -5.33 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -5.56 Total: -104.12 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.93 Total: -31.80 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.55 2.02 -72.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267066391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.352 kcal (2) G-P(sol) polarization free energy of solvation -74.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds