Wall clock time and date at job start Tue Mar 31 2020 18:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46904 * 109.46939 * 2 1 4 4 C 1.46897 * 111.00244 * 297.71120 * 3 2 1 5 5 C 1.50702 * 109.47039 * 294.87049 * 4 3 2 6 6 H 1.08002 * 119.99635 * 2.71233 * 5 4 3 7 7 C 1.37876 * 119.99933 * 182.72078 * 5 4 3 8 8 N 1.31519 * 119.99775 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00285 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47173 * 90.00229 * 9 7 5 11 11 H 1.48500 * 109.47312 * 210.00166 * 9 7 5 12 12 H 1.48501 * 109.47251 * 330.00643 * 9 7 5 13 13 C 1.46901 * 110.99944 * 61.66246 * 3 2 1 14 14 H 1.08997 * 109.47112 * 300.81043 * 13 3 2 15 15 C 1.52998 * 109.47478 * 180.80698 * 13 3 2 16 16 C 1.50699 * 109.47192 * 60.80786 * 13 3 2 17 17 O 1.21285 * 119.99969 * 28.36939 * 16 13 3 18 18 N 1.34776 * 120.00472 * 208.36974 * 16 13 3 19 19 C 1.46498 * 120.00419 * 179.97438 * 18 16 13 20 20 H 1.09003 * 109.46732 * 35.00111 * 19 18 16 21 21 C 1.52998 * 109.47343 * 275.00436 * 19 18 16 22 22 C 1.50703 * 109.47040 * 154.99649 * 19 18 16 23 23 C 1.38166 * 120.02773 * 25.00765 * 22 19 18 24 24 C 1.38242 * 120.05786 * 179.97438 * 23 22 19 25 25 C 1.38290 * 120.11028 * 0.02622 * 24 23 22 26 26 C 1.38129 * 120.05383 * 0.02562 * 25 24 23 27 27 C 1.38713 * 120.02877 * 204.72186 * 22 19 18 28 28 O 1.35904 * 120.05162 * 0.02562 * 27 22 19 29 29 C 1.42900 * 116.99486 * 179.97438 * 28 27 22 30 30 H 1.09003 * 109.47705 * 303.36327 * 1 2 3 31 31 H 1.09001 * 109.47711 * 63.37027 * 1 2 3 32 32 H 1.09005 * 109.46912 * 183.36835 * 1 2 3 33 33 H 1.08997 * 109.47398 * 240.00145 * 2 1 3 34 34 H 1.08999 * 109.47356 * 120.00064 * 2 1 3 35 35 H 1.09004 * 109.47051 * 54.86309 * 4 3 2 36 36 H 1.08991 * 109.47352 * 174.86864 * 4 3 2 37 37 H 0.96996 * 120.00202 * 179.97438 * 8 7 5 38 38 H 1.09005 * 109.46975 * 300.00446 * 15 13 3 39 39 H 1.09001 * 109.46770 * 60.00048 * 15 13 3 40 40 H 1.08996 * 109.47475 * 180.02562 * 15 13 3 41 41 H 0.96998 * 119.99831 * 0.02562 * 18 16 13 42 42 H 1.09001 * 109.46905 * 179.97438 * 21 19 18 43 43 H 1.09003 * 109.46941 * 299.99548 * 21 19 18 44 44 H 1.08998 * 109.47162 * 59.99801 * 21 19 18 45 45 H 1.08005 * 119.97163 * 359.97390 * 23 22 19 46 46 H 1.08001 * 119.94490 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.97094 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.02574 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47391 * 299.99788 * 29 28 27 50 50 H 1.09001 * 109.46969 * 59.99561 * 29 28 27 51 51 H 1.09003 * 109.47243 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5938 2.0940 -1.2141 5 6 2.2443 1.4633 -2.4183 6 1 2.8729 0.5932 -2.2987 7 6 2.0372 1.9971 -3.6725 8 7 2.6054 1.4470 -4.7233 9 14 0.9497 3.5017 -3.8793 10 1 1.7769 4.7298 -3.7653 11 1 0.3011 3.4640 -5.2146 12 1 -0.0933 3.5077 -2.8223 13 6 1.5813 2.0983 1.2071 14 1 0.4923 2.1002 1.2527 15 6 2.0923 3.5397 1.1617 16 6 2.1339 1.4077 2.4272 17 8 3.1760 0.7915 2.3554 18 7 1.4702 1.4748 3.5983 19 6 2.0071 0.8030 4.7842 20 1 3.0959 0.8532 4.7685 21 6 1.5642 -0.6615 4.7852 22 6 1.4907 1.4850 6.0249 23 6 0.3020 2.1880 5.9835 24 6 -0.1726 2.8134 7.1214 25 6 0.5410 2.7377 8.3035 26 6 1.7305 2.0369 8.3498 27 6 2.2053 1.4025 7.2109 28 8 3.3722 0.7072 7.2554 29 6 4.0548 0.6652 8.5102 30 1 -0.3634 0.5652 0.8583 31 1 -0.3634 0.4606 -0.9186 32 1 -0.3633 -1.0259 0.0604 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5100 2.0296 -1.3112 36 1 1.8910 3.1404 -1.1469 37 1 2.4594 1.8223 -5.6058 38 1 3.1814 3.5378 1.1160 39 1 1.6926 4.0393 0.2792 40 1 1.7675 4.0688 2.0575 41 1 0.6365 1.9674 3.6557 42 1 1.9641 -1.1614 5.6674 43 1 0.4754 -0.7117 4.8010 44 1 1.9377 -1.1547 3.8879 45 1 -0.2570 2.2490 5.0613 46 1 -1.1018 3.3628 7.0868 47 1 0.1680 3.2268 9.1912 48 1 2.2876 1.9784 9.2732 49 1 4.3061 1.6792 8.8212 50 1 3.4104 0.2046 9.2591 51 1 4.9683 0.0794 8.4075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267066394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:34 Heat of formation + Delta-G solvation = -29.978699 kcal Electronic energy + Delta-G solvation = -29772.261300 eV Core-core repulsion = 25865.766597 eV Total energy + Delta-G solvation = -3906.494703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81680 -39.73082 -37.90945 -37.03448 -35.35518 -32.62967 -32.12495 -31.18281 -30.58022 -29.47320 -28.89922 -27.61358 -26.72359 -24.61601 -23.47689 -22.71571 -22.53351 -21.22603 -20.16597 -19.13560 -18.26134 -17.08078 -16.81187 -16.50802 -16.15241 -16.07181 -15.36925 -15.13639 -14.89299 -14.80213 -14.39437 -14.10831 -13.92210 -13.78296 -13.54452 -13.25424 -13.05883 -12.58552 -12.50630 -12.47374 -12.25004 -12.09926 -12.01752 -11.96752 -11.87156 -11.47889 -11.43060 -11.30391 -11.14517 -10.90973 -10.85666 -10.64184 -10.50107 -9.98170 -9.83798 -9.29888 -9.19481 -9.16044 -8.97996 -8.51307 -8.46459 -7.26487 -6.00181 -3.96520 0.93837 1.08807 2.93079 3.00036 3.21141 3.29768 3.37269 3.37473 3.42309 4.30234 4.44608 4.44828 4.62134 4.72513 4.74073 4.79149 4.92043 4.98891 5.08772 5.14432 5.20099 5.27611 5.31002 5.34572 5.44211 5.52660 5.56729 5.70663 5.76139 5.81106 5.87969 5.93556 5.96389 6.03524 6.10119 6.15746 6.18125 6.19455 6.38183 6.39495 6.52171 6.55928 6.62972 6.85711 6.98767 7.03237 7.08798 7.56302 7.67788 7.95228 8.07327 8.57747 8.70990 9.10427 9.61007 11.13153 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002602 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.931001 B =10758.798928 C =11174.578606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 N -0.501 5.501 4 C 0.156 3.844 5 C -0.504 4.504 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.062 3.938 14 H 0.050 0.950 15 C -0.142 4.142 16 C 0.523 3.477 17 O -0.512 6.512 18 N -0.737 5.737 19 C 0.193 3.807 20 H 0.101 0.899 21 C -0.153 4.153 22 C -0.117 4.117 23 C -0.079 4.079 24 C -0.152 4.152 25 C -0.084 4.084 26 C -0.205 4.205 27 C 0.137 3.863 28 O -0.310 6.310 29 C 0.027 3.973 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.060 0.940 35 H -0.007 1.007 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.394 0.606 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.129 0.871 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 1.957 29.714 30.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.071 4.071 3 N -0.225 5.225 4 C 0.031 3.969 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.050 4.050 14 H 0.068 0.932 15 C -0.200 4.200 16 C 0.309 3.691 17 O -0.384 6.384 18 N -0.393 5.393 19 C 0.089 3.911 20 H 0.118 0.882 21 C -0.212 4.212 22 C -0.118 4.118 23 C -0.098 4.098 24 C -0.170 4.170 25 C -0.102 4.102 26 C -0.224 4.224 27 C 0.091 3.909 28 O -0.223 6.223 29 C -0.068 4.068 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.011 0.989 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.229 0.771 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.147 0.853 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.794 1.394 29.284 29.706 hybrid contribution -1.955 1.213 0.157 2.306 sum -6.749 2.607 29.441 30.317 Atomic orbital electron populations 1.22412 0.99651 1.01125 1.01543 1.22078 0.91533 0.90740 1.02772 1.62040 1.58825 1.01607 1.00051 1.20337 0.94049 0.94725 0.87822 1.21016 1.29528 1.14793 0.88849 0.90051 1.24879 0.95687 0.96867 0.95883 1.69893 1.44244 1.41069 0.98781 0.86914 0.81429 0.84151 0.77576 1.20136 1.21285 1.19295 1.21574 0.97416 0.95229 0.90812 0.93209 1.21838 1.03234 0.93083 1.01831 1.20764 0.84479 0.80086 0.83788 1.90690 1.22603 1.40792 1.84345 1.46323 1.27275 1.56057 1.09598 1.19486 0.99777 0.91040 0.80835 0.88156 1.22105 1.01221 0.95027 1.02826 1.19347 0.96109 1.02738 0.93584 1.20758 0.94355 0.96038 0.98607 1.21037 1.00989 1.02113 0.92862 1.20945 0.93925 0.97264 0.98045 1.21221 0.99614 1.03716 0.97861 1.18737 0.86060 0.92549 0.93585 1.86137 1.33120 1.68484 1.34574 1.23084 0.97031 1.02157 0.84533 0.94060 0.91563 0.93027 0.89162 0.92151 0.98939 0.95149 0.92730 0.90966 0.90781 0.92791 0.77052 0.91653 0.92653 0.91416 0.85475 0.85676 0.85775 0.85347 0.92638 0.92668 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 9.24 37.15 0.34 -2.96 16 2 C 0.06 1.17 5.53 -3.83 -0.02 1.14 16 3 N -0.50 -10.89 4.29 -229.48 -0.98 -11.87 16 4 C 0.16 3.75 3.29 -4.98 -0.02 3.74 16 5 C -0.50 -14.39 9.09 -34.44 -0.31 -14.71 16 6 H 0.08 2.57 7.19 -52.49 -0.38 2.19 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 9 Si 0.87 21.34 27.41 -169.99 -4.66 16.68 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.23 6.62 56.52 0.37 -5.85 16 13 C 0.06 1.08 2.14 -68.87 -0.15 0.93 16 14 H 0.05 0.78 6.23 -51.93 -0.32 0.46 16 15 C -0.14 -2.28 8.82 37.16 0.33 -1.95 16 16 C 0.52 8.82 5.92 -10.99 -0.07 8.76 16 17 O -0.51 -10.68 15.33 5.55 0.09 -10.59 16 18 N -0.74 -9.41 5.00 -54.93 -0.27 -9.69 16 19 C 0.19 2.40 2.50 -69.08 -0.17 2.23 16 20 H 0.10 1.51 7.13 -51.93 -0.37 1.13 16 21 C -0.15 -1.81 9.47 37.16 0.35 -1.46 16 22 C -0.12 -1.24 5.07 -104.47 -0.53 -1.77 16 23 C -0.08 -0.70 9.23 -39.61 -0.37 -1.07 16 24 C -0.15 -1.16 10.04 -39.56 -0.40 -1.56 16 25 C -0.08 -0.62 10.04 -39.60 -0.40 -1.01 16 26 C -0.21 -1.66 9.04 -39.43 -0.36 -2.02 16 27 C 0.14 1.38 6.66 -39.22 -0.26 1.12 16 28 O -0.31 -3.15 9.64 -19.44 -0.19 -3.34 16 29 C 0.03 0.16 9.81 101.05 0.99 1.15 16 30 H 0.04 0.64 6.25 -51.93 -0.32 0.31 16 31 H 0.07 1.28 6.52 -51.93 -0.34 0.94 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 2.07 6.68 -51.93 -0.35 1.72 16 34 H 0.06 1.21 6.43 -51.93 -0.33 0.88 16 35 H -0.01 -0.16 5.43 -51.93 -0.28 -0.45 16 36 H 0.03 0.72 5.01 -51.93 -0.26 0.46 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.22 6.14 -51.93 -0.32 0.90 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.39 3.97 6.21 -40.82 -0.25 3.72 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.13 0.92 6.07 -52.48 -0.32 0.60 16 46 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 49 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 50 H 0.05 0.26 7.68 -51.93 -0.40 -0.14 16 51 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -34.48 396.16 -8.35 -42.83 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.94 Total: 4.60 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.13 Total: -7.54 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.49 Total: -48.60 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.10 Total: -13.93 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.66 Total: 16.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.48 -8.35 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267066394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.849 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds