Wall clock time and date at job start Tue Mar 31 2020 18:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46904 * 109.46939 * 2 1 4 4 C 1.46897 * 111.00244 * 297.71120 * 3 2 1 5 5 C 1.50702 * 109.47039 * 294.87049 * 4 3 2 6 6 H 1.08002 * 119.99635 * 2.71233 * 5 4 3 7 7 C 1.37876 * 119.99933 * 182.72078 * 5 4 3 8 8 N 1.31519 * 119.99775 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00285 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47173 * 90.00229 * 9 7 5 11 11 H 1.48500 * 109.47312 * 210.00166 * 9 7 5 12 12 H 1.48501 * 109.47251 * 330.00643 * 9 7 5 13 13 C 1.46901 * 110.99944 * 61.66246 * 3 2 1 14 14 H 1.08997 * 109.47112 * 300.81043 * 13 3 2 15 15 C 1.52998 * 109.47478 * 180.80698 * 13 3 2 16 16 C 1.50699 * 109.47192 * 60.80786 * 13 3 2 17 17 O 1.21285 * 119.99969 * 28.36939 * 16 13 3 18 18 N 1.34776 * 120.00472 * 208.36974 * 16 13 3 19 19 C 1.46498 * 120.00419 * 179.97438 * 18 16 13 20 20 H 1.09003 * 109.46732 * 35.00111 * 19 18 16 21 21 C 1.52998 * 109.47343 * 275.00436 * 19 18 16 22 22 C 1.50703 * 109.47040 * 154.99649 * 19 18 16 23 23 C 1.38166 * 120.02773 * 25.00765 * 22 19 18 24 24 C 1.38242 * 120.05786 * 179.97438 * 23 22 19 25 25 C 1.38290 * 120.11028 * 0.02622 * 24 23 22 26 26 C 1.38129 * 120.05383 * 0.02562 * 25 24 23 27 27 C 1.38713 * 120.02877 * 204.72186 * 22 19 18 28 28 O 1.35904 * 120.05162 * 0.02562 * 27 22 19 29 29 C 1.42900 * 116.99486 * 179.97438 * 28 27 22 30 30 H 1.09003 * 109.47705 * 303.36327 * 1 2 3 31 31 H 1.09001 * 109.47711 * 63.37027 * 1 2 3 32 32 H 1.09005 * 109.46912 * 183.36835 * 1 2 3 33 33 H 1.08997 * 109.47398 * 240.00145 * 2 1 3 34 34 H 1.08999 * 109.47356 * 120.00064 * 2 1 3 35 35 H 1.09004 * 109.47051 * 54.86309 * 4 3 2 36 36 H 1.08991 * 109.47352 * 174.86864 * 4 3 2 37 37 H 0.96996 * 120.00202 * 179.97438 * 8 7 5 38 38 H 1.09005 * 109.46975 * 300.00446 * 15 13 3 39 39 H 1.09001 * 109.46770 * 60.00048 * 15 13 3 40 40 H 1.08996 * 109.47475 * 180.02562 * 15 13 3 41 41 H 0.96998 * 119.99831 * 0.02562 * 18 16 13 42 42 H 1.09001 * 109.46905 * 179.97438 * 21 19 18 43 43 H 1.09003 * 109.46941 * 299.99548 * 21 19 18 44 44 H 1.08998 * 109.47162 * 59.99801 * 21 19 18 45 45 H 1.08005 * 119.97163 * 359.97390 * 23 22 19 46 46 H 1.08001 * 119.94490 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.97094 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.02574 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47391 * 299.99788 * 29 28 27 50 50 H 1.09001 * 109.46969 * 59.99561 * 29 28 27 51 51 H 1.09003 * 109.47243 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5938 2.0940 -1.2141 5 6 2.2443 1.4633 -2.4183 6 1 2.8729 0.5932 -2.2987 7 6 2.0372 1.9971 -3.6725 8 7 2.6054 1.4470 -4.7233 9 14 0.9497 3.5017 -3.8793 10 1 1.7769 4.7298 -3.7653 11 1 0.3011 3.4640 -5.2146 12 1 -0.0933 3.5077 -2.8223 13 6 1.5813 2.0983 1.2071 14 1 0.4923 2.1002 1.2527 15 6 2.0923 3.5397 1.1617 16 6 2.1339 1.4077 2.4272 17 8 3.1760 0.7915 2.3554 18 7 1.4702 1.4748 3.5983 19 6 2.0071 0.8030 4.7842 20 1 3.0959 0.8532 4.7685 21 6 1.5642 -0.6615 4.7852 22 6 1.4907 1.4850 6.0249 23 6 0.3020 2.1880 5.9835 24 6 -0.1726 2.8134 7.1214 25 6 0.5410 2.7377 8.3035 26 6 1.7305 2.0369 8.3498 27 6 2.2053 1.4025 7.2109 28 8 3.3722 0.7072 7.2554 29 6 4.0548 0.6652 8.5102 30 1 -0.3634 0.5652 0.8583 31 1 -0.3634 0.4606 -0.9186 32 1 -0.3633 -1.0259 0.0604 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5100 2.0296 -1.3112 36 1 1.8910 3.1404 -1.1469 37 1 2.4594 1.8223 -5.6058 38 1 3.1814 3.5378 1.1160 39 1 1.6926 4.0393 0.2792 40 1 1.7675 4.0688 2.0575 41 1 0.6365 1.9674 3.6557 42 1 1.9641 -1.1614 5.6674 43 1 0.4754 -0.7117 4.8010 44 1 1.9377 -1.1547 3.8879 45 1 -0.2570 2.2490 5.0613 46 1 -1.1018 3.3628 7.0868 47 1 0.1680 3.2268 9.1912 48 1 2.2876 1.9784 9.2732 49 1 4.3061 1.6792 8.8212 50 1 3.4104 0.2046 9.2591 51 1 4.9683 0.0794 8.4075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267066394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:33 Heat of formation + Delta-G solvation = -54.540558 kcal Electronic energy + Delta-G solvation = -29773.326382 eV Core-core repulsion = 25865.766597 eV Total energy + Delta-G solvation = -3907.559785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65292 -40.90082 -38.86631 -38.25818 -36.46034 -34.71164 -33.49154 -32.31252 -31.18843 -30.94831 -30.07534 -28.40291 -28.12724 -25.86494 -24.65273 -24.31123 -23.26850 -22.32984 -21.33884 -20.54683 -19.13850 -18.86990 -18.07478 -17.59015 -17.05216 -16.70658 -16.66803 -16.50262 -16.22340 -15.86323 -15.55367 -15.46201 -15.08428 -14.74201 -14.67652 -14.46695 -14.41112 -14.00476 -13.80562 -13.57874 -13.35210 -13.28066 -13.19939 -13.00061 -12.80553 -12.70860 -12.60296 -12.52766 -12.37816 -12.28573 -12.13841 -12.00152 -11.84200 -11.64861 -11.53899 -11.31660 -10.74915 -10.61511 -10.21317 -9.82704 -9.11362 -8.90712 -8.23462 -6.26559 0.31831 0.47902 1.37501 1.40021 1.50296 1.66142 2.06520 2.38377 2.38965 2.79165 3.08489 3.22663 3.55707 3.78444 3.88752 4.05792 4.07392 4.12336 4.20173 4.24858 4.31973 4.32749 4.39330 4.43795 4.45174 4.51347 4.54772 4.59734 4.67482 4.72677 4.73960 4.78637 4.88322 4.92850 4.96697 5.00998 5.07302 5.19947 5.21314 5.24007 5.28442 5.40028 5.41498 5.55129 5.60327 5.63484 5.84891 5.99938 6.32584 6.43710 6.54395 6.72941 6.79418 7.31834 7.36111 8.93892 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002602 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.931001 B =10758.798928 C =11174.578606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 N -0.530 5.530 4 C 0.170 3.830 5 C -0.513 4.513 6 H 0.027 0.973 7 C 0.004 3.996 8 N -0.953 5.953 9 Si 0.949 3.051 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.240 1.240 13 C 0.060 3.940 14 H 0.081 0.919 15 C -0.141 4.141 16 C 0.526 3.474 17 O -0.562 6.562 18 N -0.714 5.714 19 C 0.199 3.801 20 H 0.066 0.934 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.084 4.084 24 C -0.153 4.153 25 C -0.082 4.082 26 C -0.209 4.209 27 C 0.119 3.881 28 O -0.338 6.338 29 C 0.019 3.981 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.004 0.996 36 H 0.041 0.959 37 H 0.266 0.734 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.411 0.589 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.142 0.858 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.148 0.852 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 4.629 32.823 34.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.066 4.066 3 N -0.255 5.255 4 C 0.044 3.956 5 C -0.552 4.552 6 H 0.046 0.954 7 C -0.192 4.192 8 N -0.594 5.594 9 Si 0.771 3.229 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.163 1.163 13 C -0.052 4.052 14 H 0.099 0.901 15 C -0.198 4.198 16 C 0.312 3.688 17 O -0.439 6.439 18 N -0.370 5.370 19 C 0.095 3.905 20 H 0.085 0.915 21 C -0.204 4.204 22 C -0.140 4.140 23 C -0.102 4.102 24 C -0.171 4.171 25 C -0.100 4.100 26 C -0.227 4.227 27 C 0.073 3.927 28 O -0.252 6.252 29 C -0.075 4.075 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.250 0.750 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.160 0.840 46 H 0.168 0.832 47 H 0.169 0.831 48 H 0.165 0.835 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.265 4.073 32.457 33.740 hybrid contribution -0.790 0.289 -0.671 1.076 sum -9.055 4.362 31.787 33.338 Atomic orbital electron populations 1.22284 0.96701 1.02786 1.01793 1.21904 0.93912 0.90140 1.00687 1.61825 1.60431 1.02195 1.01050 1.20069 0.93869 0.94713 0.86965 1.21254 1.29002 1.13497 0.91403 0.95426 1.25902 0.97418 1.00769 0.95158 1.70078 1.46433 1.43385 0.99548 0.85696 0.79748 0.79162 0.78270 1.18982 1.21066 1.16274 1.21704 0.99098 0.95459 0.88908 0.90112 1.21857 1.01690 0.92437 1.03827 1.20714 0.83917 0.79470 0.84664 1.90682 1.24894 1.43133 1.85156 1.46093 1.27238 1.55120 1.08505 1.19335 0.97988 0.91645 0.81580 0.91539 1.22021 1.02107 0.94559 1.01738 1.19260 0.97527 1.04435 0.92756 1.20967 0.93708 0.95651 0.99875 1.21374 1.01761 1.01587 0.92385 1.21354 0.93259 0.96328 0.99054 1.21496 1.00136 1.03210 0.97907 1.18986 0.86254 0.93218 0.94254 1.86102 1.33587 1.68819 1.36704 1.23315 0.97413 1.03143 0.83622 0.91229 0.93231 0.91139 0.93327 0.92176 0.97829 0.94165 0.92565 0.93391 0.90834 0.88732 0.75005 0.91156 0.90968 0.94010 0.84003 0.83211 0.83079 0.83455 0.91664 0.91183 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.93 9.24 71.98 0.66 -5.27 16 2 C 0.06 2.60 5.53 86.30 0.48 3.08 16 3 N -0.53 -23.28 4.29 -879.95 -3.78 -27.05 16 4 C 0.17 8.11 3.29 85.56 0.28 8.39 16 5 C -0.51 -30.52 9.09 25.60 0.23 -30.29 16 6 H 0.03 1.88 7.19 -2.91 -0.02 1.86 16 7 C 0.00 0.23 5.47 84.65 0.46 0.70 16 8 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 9 Si 0.95 43.60 27.41 68.60 1.88 45.49 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.24 -9.85 6.62 99.48 0.66 -9.19 16 13 C 0.06 1.99 2.14 44.17 0.09 2.08 16 14 H 0.08 2.20 6.23 -2.39 -0.01 2.19 16 15 C -0.14 -4.18 8.82 71.98 0.63 -3.55 16 16 C 0.53 17.47 5.92 87.66 0.52 17.99 16 17 O -0.56 -24.36 15.33 -3.05 -0.05 -24.40 16 18 N -0.71 -17.12 5.00 -446.09 -2.23 -19.35 16 19 C 0.20 4.90 2.50 44.25 0.11 5.01 16 20 H 0.07 2.10 7.13 -2.39 -0.02 2.09 16 21 C -0.15 -3.43 9.47 71.98 0.68 -2.75 16 22 C -0.14 -2.74 5.07 -19.77 -0.10 -2.84 16 23 C -0.08 -1.22 9.23 22.25 0.21 -1.02 16 24 C -0.15 -1.74 10.04 22.28 0.22 -1.52 16 25 C -0.08 -0.90 10.04 22.26 0.22 -0.68 16 26 C -0.21 -2.85 9.04 22.37 0.20 -2.65 16 27 C 0.12 2.27 6.66 22.51 0.15 2.42 16 28 O -0.34 -6.85 9.64 -92.47 -0.89 -7.75 16 29 C 0.02 0.21 9.81 113.37 1.11 1.33 16 30 H 0.07 1.92 6.25 -2.39 -0.01 1.90 16 31 H 0.05 1.83 6.52 -2.39 -0.02 1.82 16 32 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.05 2.41 6.68 -2.39 -0.02 2.39 16 34 H 0.06 2.51 6.43 -2.39 -0.02 2.49 16 35 H 0.00 0.19 5.43 -2.38 -0.01 0.18 16 36 H 0.04 1.85 5.01 -2.39 -0.01 1.84 16 37 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 38 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.07 2.20 6.14 -2.39 -0.01 2.19 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.41 6.93 6.21 -92.71 -0.58 6.35 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.14 1.49 6.07 -2.91 -0.02 1.47 16 46 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 47 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 48 H 0.15 1.32 6.30 -2.91 -0.02 1.31 16 49 H 0.06 0.57 7.65 -2.39 -0.02 0.55 16 50 H 0.07 0.54 7.68 -2.39 -0.02 0.52 16 51 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -80.98 396.16 1.73 -79.25 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.32 Total: 24.26 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 6.18 Total: -9.57 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -5.71 Total: -107.27 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.94 Total: -32.15 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Total: -80.98 1.73 -79.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267066394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.705 kcal (2) G-P(sol) polarization free energy of solvation -80.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds