Wall clock time and date at job start Tue Mar 31 2020 18:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46782 * 2 1 4 4 C 1.50702 * 109.47251 * 240.00400 * 2 1 3 5 5 O 1.21289 * 120.00007 * 260.62898 * 4 2 1 6 6 N 1.34773 * 120.00023 * 80.62590 * 4 2 1 7 7 C 1.46501 * 120.00051 * 355.06010 * 6 4 2 8 8 C 1.50702 * 109.46841 * 95.31783 * 7 6 4 9 9 H 1.07997 * 120.00480 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99426 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00305 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99735 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47202 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47090 * 120.00422 * 12 10 8 15 15 H 1.48500 * 109.46845 * 240.00411 * 12 10 8 16 16 C 1.39928 * 119.99944 * 174.77852 * 6 4 2 17 17 C 1.38872 * 120.06918 * 6.72783 * 16 6 4 18 18 C 1.38115 * 119.92661 * 179.76269 * 17 16 6 19 19 C 1.38281 * 120.07084 * 0.48704 * 18 17 16 20 20 C 1.38275 * 120.14290 * 359.76601 * 19 18 17 21 21 C 1.38114 * 120.07113 * 0.02562 * 20 19 18 22 22 N 1.46901 * 109.47241 * 119.99991 * 2 1 3 23 23 C 1.46903 * 111.00091 * 58.95900 * 22 2 1 24 24 C 1.46890 * 111.00136 * 295.00253 * 22 2 1 25 25 C 1.53005 * 109.47191 * 206.27154 * 24 22 2 26 26 C 1.53001 * 109.47099 * 62.88479 * 25 24 22 27 27 C 1.53005 * 109.47157 * 182.88182 * 25 24 22 28 28 O 1.42896 * 109.47378 * 302.88147 * 25 24 22 29 29 H 1.08997 * 109.47509 * 303.01653 * 1 2 3 30 30 H 1.08990 * 109.47273 * 63.02258 * 1 2 3 31 31 H 1.09002 * 109.46348 * 183.02113 * 1 2 3 32 32 H 1.08997 * 109.46901 * 215.31755 * 7 6 4 33 33 H 1.08992 * 109.47097 * 335.31830 * 7 6 4 34 34 H 0.97004 * 119.99919 * 179.97438 * 11 10 8 35 35 H 1.08005 * 120.03522 * 359.97438 * 17 16 6 36 36 H 1.08000 * 119.96275 * 180.25531 * 18 17 16 37 37 H 1.07998 * 119.92595 * 179.74785 * 19 18 17 38 38 H 1.07999 * 119.96783 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.04121 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.47304 * 72.56961 * 23 22 2 41 41 H 1.08992 * 109.47204 * 192.57499 * 23 22 2 42 42 H 1.08999 * 109.46497 * 312.57260 * 23 22 2 43 43 H 1.09007 * 109.47312 * 326.26837 * 24 22 2 44 44 H 1.09001 * 109.47483 * 86.27335 * 24 22 2 45 45 H 1.08999 * 109.47114 * 59.99397 * 26 25 24 46 46 H 1.08999 * 109.46921 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.46818 * 299.99616 * 26 25 24 48 48 H 1.08989 * 109.47091 * 64.89028 * 27 25 24 49 49 H 1.08998 * 109.46919 * 184.89623 * 27 25 24 50 50 H 1.09011 * 109.46767 * 304.89175 * 27 25 24 51 51 H 0.96702 * 113.99501 * 70.82918 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3958 -1.8652 -1.1582 6 7 2.0778 -0.0623 -2.4114 7 6 1.5389 1.2954 -2.5230 8 6 2.6538 2.2943 -2.3488 9 1 3.6629 1.9520 -2.1729 10 6 2.3856 3.6451 -2.4150 11 7 1.1569 4.0619 -2.6296 12 14 3.7674 4.8834 -2.1983 13 1 5.0460 4.1634 -1.9702 14 1 3.8810 5.7174 -3.4216 15 1 3.4738 5.7536 -1.0314 16 6 2.6450 -0.6840 -3.5293 17 6 3.0342 -2.0154 -3.4623 18 6 3.5892 -2.6276 -4.5690 19 6 3.7668 -1.9134 -5.7397 20 6 3.3851 -0.5861 -5.8080 21 6 2.8256 0.0307 -4.7062 22 7 2.0197 -0.6925 1.1994 23 6 1.5285 -2.0762 1.2459 24 6 1.6487 0.0391 2.4180 25 6 2.6528 -0.2772 3.5284 26 6 4.0419 0.2129 3.1147 27 6 2.2263 0.4277 4.8176 28 8 2.6915 -1.6887 3.7477 29 1 -0.3634 0.5599 0.8617 30 1 -0.3633 0.4661 -0.9157 31 1 -0.3632 -1.0263 0.0542 32 1 1.0841 1.4261 -3.5049 33 1 0.7864 1.4523 -1.7503 34 1 0.9682 5.0123 -2.6758 35 1 2.8998 -2.5725 -2.5468 36 1 3.8883 -3.6641 -4.5188 37 1 4.2048 -2.3932 -6.6024 38 1 3.5255 -0.0308 -6.7236 39 1 2.5280 1.0675 -4.7600 40 1 2.0495 -2.6721 0.4967 41 1 1.7131 -2.4942 2.2354 42 1 0.4582 -2.0887 1.0401 43 1 1.6565 1.1101 2.2154 44 1 0.6504 -0.2637 2.7339 45 1 4.0123 1.2896 2.9473 46 1 4.7572 -0.0128 3.9055 47 1 4.3457 -0.2893 2.1962 48 1 1.2767 0.0164 5.1595 49 1 2.9859 0.2740 5.5841 50 1 2.1126 1.4951 4.6276 51 1 3.1094 -2.1866 3.0317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267156482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:40 Heat of formation + Delta-G solvation = -40.564381 kcal Electronic energy + Delta-G solvation = -30903.887382 eV Core-core repulsion = 26996.933650 eV Total energy + Delta-G solvation = -3906.953732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02715 -40.24603 -39.13712 -37.11256 -36.96808 -34.63365 -33.47627 -32.08432 -31.69302 -30.36115 -29.12628 -28.17753 -27.97912 -26.58562 -25.18309 -24.28518 -23.23126 -22.13610 -21.13983 -20.21885 -18.79501 -18.44924 -17.93307 -17.79851 -16.97888 -16.67205 -16.41489 -16.28506 -15.89835 -15.51589 -15.28776 -15.25575 -14.85350 -14.66326 -14.64408 -14.32068 -14.15896 -13.87764 -13.59281 -13.56399 -13.24786 -13.10380 -13.04106 -12.99467 -12.90429 -12.82325 -12.58488 -12.40602 -12.35275 -12.32364 -12.20671 -12.09668 -11.94575 -11.79068 -11.50708 -10.89458 -10.84640 -10.65541 -9.90692 -9.73536 -9.18641 -8.75141 -8.23655 -6.39614 0.45371 0.61307 1.36840 1.41326 1.50797 1.66168 2.02500 2.37462 2.96309 3.04857 3.08704 3.33215 3.44779 3.87692 4.03436 4.07286 4.11917 4.18239 4.21329 4.23247 4.40742 4.44254 4.52767 4.56723 4.58641 4.67775 4.69782 4.70426 4.75122 4.81208 4.86364 4.95073 4.99102 5.03715 5.05207 5.12519 5.18065 5.26406 5.30183 5.38797 5.43703 5.49397 5.64101 5.65316 5.75103 5.84072 5.93860 5.96067 6.13129 6.36041 6.49030 6.73376 6.78732 7.19285 7.32481 8.80052 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.004922 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.850820 B = 5686.910428 C = 7812.339157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.101 0.899 4 C 0.523 3.477 5 O -0.536 6.536 6 N -0.540 5.540 7 C 0.239 3.761 8 C -0.540 4.540 9 H 0.046 0.954 10 C 0.032 3.968 11 N -0.914 5.914 12 Si 0.950 3.050 13 H -0.276 1.276 14 H -0.278 1.278 15 H -0.273 1.273 16 C 0.140 3.860 17 C -0.196 4.196 18 C -0.106 4.106 19 C -0.152 4.152 20 C -0.105 4.105 21 C -0.166 4.166 22 N -0.522 5.522 23 C -0.007 4.007 24 C 0.031 3.969 25 C 0.137 3.863 26 C -0.168 4.168 27 C -0.137 4.137 28 O -0.571 6.571 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.054 0.946 34 H 0.270 0.730 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.026 0.974 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 -8.248 6.301 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.036 4.036 3 H 0.119 0.881 4 C 0.315 3.685 5 O -0.417 6.417 6 N -0.260 5.260 7 C 0.120 3.880 8 C -0.578 4.578 9 H 0.064 0.936 10 C -0.170 4.170 11 N -0.552 5.552 12 Si 0.776 3.224 13 H -0.200 1.200 14 H -0.204 1.204 15 H -0.198 1.198 16 C 0.045 3.955 17 C -0.215 4.215 18 C -0.125 4.125 19 C -0.170 4.170 20 C -0.124 4.124 21 C -0.187 4.187 22 N -0.246 5.246 23 C -0.154 4.154 24 C -0.097 4.097 25 C 0.097 3.903 26 C -0.225 4.225 27 C -0.195 4.195 28 O -0.381 6.381 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.186 0.814 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.045 0.955 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.099 0.901 51 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.243 -8.463 6.916 11.000 hybrid contribution -0.137 1.220 -0.810 1.470 sum 1.106 -7.243 6.106 9.538 Atomic orbital electron populations 1.22368 0.94163 1.03033 1.03769 1.21568 0.95052 0.98596 0.88411 0.88083 1.20896 0.77050 0.86102 0.84483 1.90128 1.49577 1.17646 1.84318 1.45949 1.54772 1.17333 1.07910 1.19469 0.94595 0.75767 0.98216 1.21449 0.94399 0.91324 1.50678 0.93553 1.25500 0.97572 0.99643 0.94238 1.69987 1.20042 1.16174 1.49024 0.85614 0.79591 0.79042 0.78143 1.20027 1.20376 1.19833 1.18396 0.96741 0.92865 0.87521 1.22793 1.02105 0.93824 1.02822 1.21406 0.98012 1.00649 0.92410 1.21398 1.02365 0.94294 0.98983 1.21203 0.97743 0.95678 0.97728 1.21118 1.04060 1.00221 0.93255 1.61962 1.59393 1.03059 1.00173 1.23205 0.98529 0.89252 1.04398 1.22861 0.98094 0.98834 0.89913 1.21206 0.93948 0.81204 0.93980 1.22347 0.96580 1.01971 1.01647 1.21762 1.02199 1.00237 0.95278 1.86459 1.83236 1.18515 1.49905 0.89887 0.92061 0.91169 0.95971 0.92869 0.92106 0.81354 0.83744 0.83259 0.84033 0.86759 0.89560 0.88887 0.95529 0.90434 0.93061 0.91953 0.91760 0.92626 0.91901 0.91322 0.90139 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 8.31 71.98 0.60 -4.78 16 2 C 0.08 2.62 1.84 44.17 0.08 2.70 16 3 H 0.10 4.00 6.81 -2.38 -0.02 3.98 16 4 C 0.52 21.02 6.78 87.66 0.59 21.61 16 5 O -0.54 -21.59 9.85 -3.06 -0.03 -21.62 16 6 N -0.54 -23.50 2.69 -635.31 -1.71 -25.21 16 7 C 0.24 11.28 4.08 85.63 0.35 11.63 16 8 C -0.54 -27.57 8.44 25.60 0.22 -27.35 16 9 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 10 C 0.03 1.62 5.46 84.66 0.46 2.08 16 11 N -0.91 -48.29 13.29 21.45 0.28 -48.01 16 12 Si 0.95 41.06 29.54 68.60 2.03 43.08 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 C 0.14 5.92 6.47 38.15 0.25 6.17 16 17 C -0.20 -7.49 9.05 22.39 0.20 -7.28 16 18 C -0.11 -3.29 10.04 22.25 0.22 -3.07 16 19 C -0.15 -4.33 10.04 22.29 0.22 -4.11 16 20 C -0.11 -3.42 10.04 22.25 0.22 -3.19 16 21 C -0.17 -6.72 9.03 22.39 0.20 -6.52 16 22 N -0.52 -15.49 3.85 -901.47 -3.47 -18.96 16 23 C -0.01 -0.19 8.06 127.69 1.03 0.84 16 24 C 0.03 0.79 3.33 86.31 0.29 1.08 16 25 C 0.14 3.17 1.20 -10.79 -0.01 3.16 16 26 C -0.17 -4.03 8.59 71.98 0.62 -3.41 16 27 C -0.14 -2.62 8.84 71.98 0.64 -1.99 16 28 O -0.57 -13.73 11.43 -148.98 -1.70 -15.44 16 29 H 0.08 2.24 7.32 -2.39 -0.02 2.22 16 30 H 0.06 2.08 6.19 -2.39 -0.01 2.06 16 31 H 0.07 2.04 5.98 -2.39 -0.01 2.02 16 32 H 0.02 1.13 6.85 -2.39 -0.02 1.12 16 33 H 0.05 2.49 4.54 -2.39 -0.01 2.48 16 34 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 35 H 0.17 6.73 4.53 -62.18 -0.28 6.45 16 36 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 38 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 39 H 0.11 5.11 6.14 -2.91 -0.02 5.10 16 40 H 0.09 2.75 5.44 -2.39 -0.01 2.73 16 41 H 0.09 2.23 4.74 -2.39 -0.01 2.22 16 42 H 0.03 0.73 5.63 -2.39 -0.01 0.72 16 43 H 0.08 2.03 7.70 -2.38 -0.02 2.01 16 44 H 0.05 1.25 7.69 -2.39 -0.02 1.23 16 45 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.54 7.69 -2.38 -0.02 1.52 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.38 8.60 6.75 -74.06 -0.50 8.10 16 Total: -1.00 -57.44 386.56 1.76 -55.68 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: 0.18 Total: 42.91 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 6.18 Total: -12.44 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -4.90 Total: -92.18 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.73 Total: -37.06 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -57.44 1.76 -55.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267156482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.119 kcal (2) G-P(sol) polarization free energy of solvation -57.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds