Wall clock time and date at job start Tue Mar 31 2020 18:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.46988 * 2 1 4 4 C 1.46898 * 111.00240 * 209.65239 * 3 2 1 5 5 C 1.52999 * 109.47195 * 66.04638 * 4 3 2 6 6 C 1.53003 * 109.47172 * 180.02562 * 5 4 3 7 7 O 1.42908 * 109.46943 * 179.97438 * 6 5 4 8 8 C 1.46898 * 111.00374 * 85.69614 * 3 2 1 9 9 H 1.08997 * 109.47719 * 182.43899 * 8 3 2 10 10 C 1.53007 * 109.46760 * 62.43527 * 8 3 2 11 11 C 1.50701 * 109.47098 * 302.44137 * 8 3 2 12 12 O 1.21284 * 120.00441 * 99.32205 * 11 8 3 13 13 N 1.34784 * 119.99641 * 279.31917 * 11 8 3 14 14 C 1.46496 * 119.99731 * 5.82640 * 13 11 8 15 15 C 1.50700 * 109.47334 * 95.24590 * 14 13 11 16 16 H 1.07997 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00144 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47260 * 89.99622 * 19 17 15 21 21 H 1.48504 * 109.46911 * 209.99830 * 19 17 15 22 22 H 1.48493 * 109.47022 * 329.99533 * 19 17 15 23 23 C 1.39921 * 119.99816 * 185.81822 * 13 11 8 24 24 C 1.38874 * 120.07057 * 8.17792 * 23 13 11 25 25 C 1.38113 * 119.92776 * 179.76155 * 24 23 13 26 26 C 1.38283 * 120.06948 * 0.48118 * 25 24 23 27 27 C 1.38281 * 120.14241 * 359.77370 * 26 25 24 28 28 C 1.38113 * 120.06906 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.46813 * 173.86109 * 1 2 3 30 30 H 1.09003 * 109.47104 * 293.85750 * 1 2 3 31 31 H 1.08998 * 109.47177 * 53.86342 * 1 2 3 32 32 H 1.08994 * 109.47616 * 119.99479 * 2 1 3 33 33 H 1.09001 * 109.47476 * 240.00602 * 2 1 3 34 34 H 1.09001 * 109.47386 * 186.04280 * 4 3 2 35 35 H 1.08997 * 109.47169 * 306.04467 * 4 3 2 36 36 H 1.08999 * 109.47099 * 299.99793 * 5 4 3 37 37 H 1.08997 * 109.47600 * 60.00213 * 5 4 3 38 38 H 1.09001 * 109.47113 * 299.99461 * 6 5 4 39 39 H 1.08997 * 109.47465 * 59.99662 * 6 5 4 40 40 H 0.96698 * 113.99840 * 179.97438 * 7 6 5 41 41 H 1.09003 * 109.46778 * 174.97826 * 10 8 3 42 42 H 1.08996 * 109.47339 * 294.97431 * 10 8 3 43 43 H 1.08997 * 109.46896 * 54.97967 * 10 8 3 44 44 H 1.09006 * 109.47035 * 215.24252 * 14 13 11 45 45 H 1.09003 * 109.47407 * 335.24084 * 14 13 11 46 46 H 0.97002 * 120.00248 * 180.02562 * 18 17 15 47 47 H 1.08002 * 120.03621 * 359.96961 * 24 23 13 48 48 H 1.07997 * 119.96707 * 180.24843 * 25 24 23 49 49 H 1.07998 * 119.92847 * 179.74228 * 26 25 24 50 50 H 1.08000 * 119.96590 * 179.97438 * 27 26 25 51 51 H 1.08003 * 120.03082 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3187 1.4842 -0.6785 5 6 3.1446 1.1597 -2.1635 6 6 4.4979 1.2623 -2.8700 7 8 4.3353 0.9587 -4.2570 8 6 2.0981 1.9157 1.3675 9 1 2.4219 2.9560 1.3356 10 6 3.1030 1.0933 2.1768 11 6 0.7411 1.8317 2.0176 12 8 0.4871 0.9196 2.7756 13 7 -0.1904 2.7703 1.7566 14 6 0.0692 3.7987 0.7461 15 6 -0.5214 3.3684 -0.5719 16 1 -1.0381 2.4232 -0.6491 17 6 -0.4013 4.1809 -1.6793 18 7 0.2283 5.3317 -1.5854 19 14 -1.1328 3.6471 -3.3132 20 1 -2.5310 4.1372 -3.4133 21 1 -0.3283 4.2150 -4.4248 22 1 -1.1205 2.1648 -3.4003 23 6 -1.4053 2.7623 2.4507 24 6 -1.5885 1.8987 3.5227 25 6 -2.7871 1.8967 4.2089 26 6 -3.8076 2.7464 3.8233 27 6 -3.6302 3.6038 2.7530 28 6 -2.4322 3.6143 2.0659 29 1 -0.3633 -1.0218 -0.1099 30 1 -0.3633 0.4157 0.9399 31 1 -0.3633 0.6060 -0.8299 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.7084 2.4964 -0.5711 35 1 4.0170 0.7767 -0.2314 36 1 2.7550 0.1474 -2.2710 37 1 2.4464 1.8672 -2.6106 38 1 4.8880 2.2745 -2.7627 39 1 5.1959 0.5546 -2.4229 40 1 5.1547 1.0047 -4.7683 41 1 3.2279 1.5405 3.1630 42 1 2.7346 0.0732 2.2845 43 1 4.0623 1.0806 1.6595 44 1 -0.3862 4.7385 1.0587 45 1 1.1448 3.9356 0.6348 46 1 0.3125 5.9035 -2.3644 47 1 -0.7933 1.2317 3.8216 48 1 -2.9288 1.2282 5.0452 49 1 -4.7454 2.7400 4.3589 50 1 -4.4293 4.2659 2.4540 51 1 -2.2944 4.2839 1.2298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270719980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:56 Heat of formation + Delta-G solvation = -28.351809 kcal Electronic energy + Delta-G solvation = -31396.976645 eV Core-core repulsion = 27490.552490 eV Total energy + Delta-G solvation = -3906.424155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.60230 -38.53567 -37.34722 -36.51134 -35.19265 -32.55102 -32.39295 -31.36489 -30.25742 -29.39062 -28.26157 -27.17428 -25.12109 -23.82841 -23.15558 -22.36831 -21.79675 -21.05526 -19.96952 -18.41947 -17.34720 -16.94710 -16.53044 -16.49446 -16.04860 -15.58720 -15.48320 -14.57390 -14.36538 -14.13426 -13.99063 -13.91705 -13.59035 -13.25813 -13.10479 -12.83867 -12.78005 -12.44674 -12.20077 -12.10754 -11.81451 -11.71822 -11.67330 -11.45347 -11.37552 -11.10726 -10.98501 -10.88167 -10.75955 -10.69189 -10.50987 -10.40490 -10.20493 -10.06517 -9.80026 -9.79173 -9.04623 -8.72633 -8.41855 -8.29236 -7.80895 -7.12873 -6.06489 -4.07448 1.88566 2.05132 3.09423 3.31798 3.39563 3.44756 3.68427 4.07923 4.44024 4.51048 4.61915 4.97876 5.09370 5.22232 5.28276 5.31871 5.37799 5.43930 5.47048 5.49569 5.58644 5.60687 5.69693 5.74800 5.80616 5.83304 5.91383 6.01569 6.09704 6.12651 6.19934 6.24772 6.31962 6.36420 6.45046 6.58843 6.61459 6.65276 6.83755 7.00610 7.01784 7.06619 7.14609 7.22564 7.38841 7.41721 7.48642 7.65121 7.83794 7.90433 8.11608 8.19698 8.74194 8.96497 9.56088 11.01579 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005150 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.020110 B = 5435.688311 C = 7125.623663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.044 3.956 3 N -0.493 5.493 4 C 0.066 3.934 5 C -0.119 4.119 6 C 0.079 3.921 7 O -0.573 6.573 8 C 0.070 3.930 9 H 0.105 0.895 10 C -0.176 4.176 11 C 0.536 3.464 12 O -0.546 6.546 13 N -0.526 5.526 14 C 0.234 3.766 15 C -0.501 4.501 16 H 0.065 0.935 17 C 0.069 3.931 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.273 1.273 23 C 0.170 3.830 24 C -0.175 4.175 25 C -0.111 4.111 26 C -0.162 4.162 27 C -0.107 4.107 28 C -0.140 4.140 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.375 0.625 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.050 0.950 46 H 0.261 0.739 47 H 0.170 0.830 48 H 0.112 0.888 49 H 0.109 0.891 50 H 0.116 0.884 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -5.853 4.085 9.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.083 4.083 3 N -0.217 5.217 4 C -0.062 4.062 5 C -0.156 4.156 6 C 0.001 3.999 7 O -0.378 6.378 8 C -0.041 4.041 9 H 0.123 0.877 10 C -0.235 4.235 11 C 0.326 3.674 12 O -0.427 6.427 13 N -0.244 5.244 14 C 0.116 3.884 15 C -0.539 4.539 16 H 0.083 0.917 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.197 1.197 23 C 0.074 3.926 24 C -0.195 4.195 25 C -0.130 4.130 26 C -0.181 4.181 27 C -0.125 4.125 28 C -0.161 4.161 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.221 0.779 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.186 0.814 48 H 0.130 0.870 49 H 0.127 0.873 50 H 0.134 0.866 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.173 -5.920 4.225 8.925 hybrid contribution 0.694 -0.413 -0.904 1.212 sum 5.867 -6.333 3.321 9.250 Atomic orbital electron populations 1.22076 0.94607 1.00345 1.04555 1.22240 0.97082 0.88577 1.00397 1.62090 1.25938 1.20354 1.13360 1.21907 0.89851 1.01142 0.93255 1.21522 0.96491 1.03459 0.94159 1.22139 0.97762 0.98619 0.81390 1.86524 1.37160 1.93341 1.20777 1.21753 0.92283 1.01272 0.88823 0.87711 1.22314 0.98638 1.02063 1.00487 1.20284 0.86084 0.80615 0.80421 1.90345 1.79919 1.34155 1.38235 1.46057 1.12550 1.29487 1.36301 1.19692 0.98528 0.85019 0.85182 1.21208 1.35059 1.04846 0.92813 0.91677 1.24750 0.95260 0.94785 0.98469 1.69907 1.42579 1.10815 1.30354 0.86628 0.78816 0.79135 0.83679 1.21031 1.21370 1.19733 1.18058 0.86451 0.96147 0.91913 1.22425 0.99889 1.01472 0.95704 1.20970 0.93689 0.98804 0.99496 1.20956 0.99051 0.98906 0.99224 1.20874 0.96841 0.98966 0.95850 1.21186 0.92292 1.01207 1.01386 0.94024 0.91253 0.90782 0.93955 0.91447 0.90431 0.95209 0.91438 0.89387 0.93539 0.94269 0.77912 0.92020 0.91090 0.92010 0.94659 0.93258 0.92908 0.81397 0.86992 0.87307 0.86616 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.50 37.16 0.35 -2.63 16 2 C 0.04 0.74 5.14 -3.83 -0.02 0.72 16 3 N -0.49 -8.35 4.40 -228.04 -1.00 -9.35 16 4 C 0.07 0.95 4.27 -3.83 -0.02 0.93 16 5 C -0.12 -1.78 5.56 -26.73 -0.15 -1.93 16 6 C 0.08 0.97 7.05 37.16 0.26 1.23 16 7 O -0.57 -7.52 13.66 -35.23 -0.48 -8.00 16 8 C 0.07 1.17 1.82 -68.86 -0.13 1.05 16 9 H 0.11 1.79 6.44 -51.93 -0.33 1.45 16 10 C -0.18 -2.45 8.19 37.16 0.30 -2.14 16 11 C 0.54 10.32 4.08 -10.98 -0.04 10.27 16 12 O -0.55 -10.90 11.14 5.55 0.06 -10.84 16 13 N -0.53 -10.87 2.57 -114.74 -0.29 -11.16 16 14 C 0.23 5.30 4.44 -5.20 -0.02 5.28 16 15 C -0.50 -12.29 8.71 -34.44 -0.30 -12.59 16 16 H 0.07 1.68 5.98 -52.49 -0.31 1.36 16 17 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.90 -23.92 13.29 55.43 0.74 -23.18 16 19 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.17 3.47 6.46 -83.70 -0.54 2.93 16 24 C -0.18 -3.34 8.97 -39.39 -0.35 -3.69 16 25 C -0.11 -1.84 10.04 -39.61 -0.40 -2.24 16 26 C -0.16 -2.57 10.04 -39.55 -0.40 -2.97 16 27 C -0.11 -1.81 10.04 -39.61 -0.40 -2.21 16 28 C -0.14 -2.77 9.01 -39.39 -0.36 -3.13 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.44 4.36 -51.93 -0.23 1.21 16 31 H 0.07 1.57 6.53 -51.93 -0.34 1.23 16 32 H 0.04 0.68 5.68 -51.93 -0.29 0.39 16 33 H 0.07 1.03 5.81 -51.93 -0.30 0.73 16 34 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 35 H 0.03 0.37 6.76 -51.93 -0.35 0.02 16 36 H 0.07 1.02 6.25 -51.93 -0.32 0.70 16 37 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.37 2.93 9.12 45.56 0.42 3.34 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.05 5.85 -51.93 -0.30 0.75 16 43 H 0.06 0.74 6.41 -51.93 -0.33 0.40 16 44 H 0.04 0.86 6.91 -51.93 -0.36 0.50 16 45 H 0.05 1.14 5.74 -51.93 -0.30 0.85 16 46 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 47 H 0.17 3.33 4.74 -55.05 -0.26 3.06 16 48 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 49 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 50 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 51 H 0.14 2.99 6.14 -52.48 -0.32 2.67 16 LS Contribution 388.64 15.07 5.86 5.86 Total: -1.00 -28.51 388.64 -9.33 -37.84 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -6.88 Total: 12.38 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.30 Total: -9.45 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.56 Total: -43.69 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.42 Total: -18.83 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.51 -9.33 -37.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270719980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.488 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds