Wall clock time and date at job start Tue Mar 31 2020 18:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.46988 * 2 1 4 4 C 1.46898 * 111.00240 * 209.65239 * 3 2 1 5 5 C 1.52999 * 109.47195 * 66.04638 * 4 3 2 6 6 C 1.53003 * 109.47172 * 180.02562 * 5 4 3 7 7 O 1.42908 * 109.46943 * 179.97438 * 6 5 4 8 8 C 1.46898 * 111.00374 * 85.69614 * 3 2 1 9 9 H 1.08997 * 109.47719 * 182.43899 * 8 3 2 10 10 C 1.53007 * 109.46760 * 62.43527 * 8 3 2 11 11 C 1.50701 * 109.47098 * 302.44137 * 8 3 2 12 12 O 1.21284 * 120.00441 * 99.32205 * 11 8 3 13 13 N 1.34784 * 119.99641 * 279.31917 * 11 8 3 14 14 C 1.46496 * 119.99731 * 5.82640 * 13 11 8 15 15 C 1.50700 * 109.47334 * 95.24590 * 14 13 11 16 16 H 1.07997 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00144 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47260 * 89.99622 * 19 17 15 21 21 H 1.48504 * 109.46911 * 209.99830 * 19 17 15 22 22 H 1.48493 * 109.47022 * 329.99533 * 19 17 15 23 23 C 1.39921 * 119.99816 * 185.81822 * 13 11 8 24 24 C 1.38874 * 120.07057 * 8.17792 * 23 13 11 25 25 C 1.38113 * 119.92776 * 179.76155 * 24 23 13 26 26 C 1.38283 * 120.06948 * 0.48118 * 25 24 23 27 27 C 1.38281 * 120.14241 * 359.77370 * 26 25 24 28 28 C 1.38113 * 120.06906 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.46813 * 173.86109 * 1 2 3 30 30 H 1.09003 * 109.47104 * 293.85750 * 1 2 3 31 31 H 1.08998 * 109.47177 * 53.86342 * 1 2 3 32 32 H 1.08994 * 109.47616 * 119.99479 * 2 1 3 33 33 H 1.09001 * 109.47476 * 240.00602 * 2 1 3 34 34 H 1.09001 * 109.47386 * 186.04280 * 4 3 2 35 35 H 1.08997 * 109.47169 * 306.04467 * 4 3 2 36 36 H 1.08999 * 109.47099 * 299.99793 * 5 4 3 37 37 H 1.08997 * 109.47600 * 60.00213 * 5 4 3 38 38 H 1.09001 * 109.47113 * 299.99461 * 6 5 4 39 39 H 1.08997 * 109.47465 * 59.99662 * 6 5 4 40 40 H 0.96698 * 113.99840 * 179.97438 * 7 6 5 41 41 H 1.09003 * 109.46778 * 174.97826 * 10 8 3 42 42 H 1.08996 * 109.47339 * 294.97431 * 10 8 3 43 43 H 1.08997 * 109.46896 * 54.97967 * 10 8 3 44 44 H 1.09006 * 109.47035 * 215.24252 * 14 13 11 45 45 H 1.09003 * 109.47407 * 335.24084 * 14 13 11 46 46 H 0.97002 * 120.00248 * 180.02562 * 18 17 15 47 47 H 1.08002 * 120.03621 * 359.96961 * 24 23 13 48 48 H 1.07997 * 119.96707 * 180.24843 * 25 24 23 49 49 H 1.07998 * 119.92847 * 179.74228 * 26 25 24 50 50 H 1.08000 * 119.96590 * 179.97438 * 27 26 25 51 51 H 1.08003 * 120.03082 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3187 1.4842 -0.6785 5 6 3.1446 1.1597 -2.1635 6 6 4.4979 1.2623 -2.8700 7 8 4.3353 0.9587 -4.2570 8 6 2.0981 1.9157 1.3675 9 1 2.4219 2.9560 1.3356 10 6 3.1030 1.0933 2.1768 11 6 0.7411 1.8317 2.0176 12 8 0.4871 0.9196 2.7756 13 7 -0.1904 2.7703 1.7566 14 6 0.0692 3.7987 0.7461 15 6 -0.5214 3.3684 -0.5719 16 1 -1.0381 2.4232 -0.6491 17 6 -0.4013 4.1809 -1.6793 18 7 0.2283 5.3317 -1.5854 19 14 -1.1328 3.6471 -3.3132 20 1 -2.5310 4.1372 -3.4133 21 1 -0.3283 4.2150 -4.4248 22 1 -1.1205 2.1648 -3.4003 23 6 -1.4053 2.7623 2.4507 24 6 -1.5885 1.8987 3.5227 25 6 -2.7871 1.8967 4.2089 26 6 -3.8076 2.7464 3.8233 27 6 -3.6302 3.6038 2.7530 28 6 -2.4322 3.6143 2.0659 29 1 -0.3633 -1.0218 -0.1099 30 1 -0.3633 0.4157 0.9399 31 1 -0.3633 0.6060 -0.8299 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.7084 2.4964 -0.5711 35 1 4.0170 0.7767 -0.2314 36 1 2.7550 0.1474 -2.2710 37 1 2.4464 1.8672 -2.6106 38 1 4.8880 2.2745 -2.7627 39 1 5.1959 0.5546 -2.4229 40 1 5.1547 1.0047 -4.7683 41 1 3.2279 1.5405 3.1630 42 1 2.7346 0.0732 2.2845 43 1 4.0623 1.0806 1.6595 44 1 -0.3862 4.7385 1.0587 45 1 1.1448 3.9356 0.6348 46 1 0.3125 5.9035 -2.3644 47 1 -0.7933 1.2317 3.8216 48 1 -2.9288 1.2282 5.0452 49 1 -4.7454 2.7400 4.3589 50 1 -4.4293 4.2659 2.4540 51 1 -2.2944 4.2839 1.2298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270719980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:55 Heat of formation + Delta-G solvation = -46.692526 kcal Electronic energy + Delta-G solvation = -31397.771958 eV Core-core repulsion = 27490.552490 eV Total energy + Delta-G solvation = -3907.219468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.08150 -39.88489 -38.60854 -37.61963 -36.82174 -34.45490 -33.60748 -32.73105 -31.68258 -30.86527 -29.50425 -28.98500 -26.34082 -25.23321 -24.87807 -23.71762 -23.20230 -22.39374 -21.27332 -19.89128 -18.65994 -18.30628 -18.18807 -17.96471 -17.55679 -16.91207 -16.64955 -16.31758 -15.83851 -15.60582 -15.33231 -15.16298 -14.87480 -14.61654 -14.47493 -14.29807 -14.27509 -13.91605 -13.66044 -13.54324 -13.34723 -13.06592 -13.01855 -12.88962 -12.86737 -12.67996 -12.66259 -12.39915 -12.11113 -12.01312 -11.94798 -11.89002 -11.75856 -11.59926 -11.40570 -10.81843 -10.76987 -10.49405 -10.16421 -9.71158 -9.06167 -8.67872 -8.06977 -6.11627 0.46610 0.62959 1.38595 1.43211 1.49973 1.65277 2.17907 2.48072 2.90589 3.13464 3.25903 3.50668 3.55716 3.96931 4.01658 4.11241 4.18157 4.22685 4.25628 4.32547 4.33646 4.42925 4.47246 4.56655 4.64441 4.65506 4.68853 4.70641 4.74541 4.77949 4.78215 4.88484 4.93997 5.07396 5.10169 5.21879 5.24378 5.25477 5.32107 5.35961 5.47965 5.56036 5.67152 5.75611 5.84035 5.90011 6.13833 6.16874 6.23178 6.37317 6.57241 6.92656 6.94833 7.23459 7.53457 8.99042 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005150 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.020110 B = 5435.688311 C = 7125.623663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 N -0.518 5.518 4 C 0.071 3.929 5 C -0.115 4.115 6 C 0.083 3.917 7 O -0.599 6.599 8 C 0.071 3.929 9 H 0.098 0.902 10 C -0.164 4.164 11 C 0.532 3.468 12 O -0.554 6.554 13 N -0.534 5.534 14 C 0.255 3.745 15 C -0.485 4.485 16 H 0.050 0.950 17 C 0.034 3.966 18 N -0.921 5.921 19 Si 0.933 3.067 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.143 3.857 24 C -0.189 4.189 25 C -0.106 4.106 26 C -0.152 4.152 27 C -0.105 4.105 28 C -0.164 4.164 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.014 0.986 45 H 0.044 0.956 46 H 0.261 0.739 47 H 0.161 0.839 48 H 0.144 0.856 49 H 0.149 0.851 50 H 0.140 0.860 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.552 -7.213 5.120 11.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 N -0.244 5.244 4 C -0.057 4.057 5 C -0.153 4.153 6 C 0.005 3.995 7 O -0.408 6.408 8 C -0.040 4.040 9 H 0.115 0.885 10 C -0.223 4.223 11 C 0.323 3.677 12 O -0.435 6.435 13 N -0.252 5.252 14 C 0.135 3.865 15 C -0.524 4.524 16 H 0.068 0.932 17 C -0.165 4.165 18 N -0.562 5.562 19 Si 0.761 3.239 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.204 1.204 23 C 0.048 3.952 24 C -0.208 4.208 25 C -0.125 4.125 26 C -0.171 4.171 27 C -0.124 4.124 28 C -0.185 4.185 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.247 0.753 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.032 0.968 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.177 0.823 48 H 0.162 0.838 49 H 0.166 0.834 50 H 0.158 0.842 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.610 -7.289 5.261 10.596 hybrid contribution 0.464 -0.021 -1.170 1.259 sum 6.074 -7.310 4.091 10.347 Atomic orbital electron populations 1.21985 0.96665 1.00360 1.01961 1.22158 0.95233 0.88740 1.01431 1.61993 1.28008 1.20659 1.13695 1.21918 0.89136 1.01979 0.92621 1.21462 0.97359 1.01725 0.94763 1.22097 0.96312 0.99941 0.81120 1.86461 1.39420 1.93436 1.21452 1.21748 0.91382 1.01557 0.89279 0.88451 1.22236 0.98690 1.00861 1.00541 1.20756 0.86678 0.79999 0.80231 1.90328 1.80341 1.34171 1.38618 1.45981 1.13436 1.29517 1.36260 1.19233 0.97529 0.84783 0.84915 1.21201 1.33902 1.03699 0.93588 0.93192 1.25204 0.95884 0.94971 1.00477 1.69973 1.43913 1.11530 1.30766 0.85944 0.78272 0.78262 0.81430 1.20795 1.21370 1.20371 1.18347 0.86609 0.97324 0.92924 1.22435 1.01045 1.01438 0.95925 1.21359 0.92636 0.98878 0.99603 1.21370 1.00221 0.97222 0.98271 1.21198 0.96175 0.99307 0.95676 1.21131 0.93875 1.01681 1.01818 0.92515 0.93303 0.93890 0.92972 0.90098 0.90535 0.92018 0.91849 0.93904 0.92919 0.91206 0.75318 0.91512 0.91717 0.89410 0.96769 0.93817 0.93025 0.82260 0.83848 0.83370 0.84206 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 9.50 71.98 0.68 -5.15 16 2 C 0.05 1.68 5.14 86.30 0.44 2.12 16 3 N -0.52 -17.48 4.40 -875.39 -3.85 -21.33 16 4 C 0.07 1.93 4.27 86.30 0.37 2.30 16 5 C -0.12 -3.40 5.56 30.59 0.17 -3.23 16 6 C 0.08 1.89 7.05 71.98 0.51 2.39 16 7 O -0.60 -14.86 13.66 -148.98 -2.04 -16.90 16 8 C 0.07 2.38 1.82 44.17 0.08 2.46 16 9 H 0.10 3.36 6.44 -2.39 -0.02 3.35 16 10 C -0.16 -4.26 8.19 71.98 0.59 -3.67 16 11 C 0.53 20.87 4.08 87.66 0.36 21.22 16 12 O -0.55 -22.23 11.14 -3.04 -0.03 -22.27 16 13 N -0.53 -22.93 2.57 -635.30 -1.63 -24.56 16 14 C 0.26 12.12 4.44 85.63 0.38 12.50 16 15 C -0.49 -24.86 8.71 25.60 0.22 -24.63 16 16 H 0.05 2.70 5.98 -2.91 -0.02 2.69 16 17 C 0.03 1.78 5.46 84.66 0.46 2.24 16 18 N -0.92 -50.55 13.29 21.45 0.28 -50.27 16 19 Si 0.93 44.19 29.54 68.60 2.03 46.21 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 C 0.14 6.01 6.46 38.15 0.25 6.26 16 24 C -0.19 -7.16 8.97 22.39 0.20 -6.96 16 25 C -0.11 -3.29 10.04 22.25 0.22 -3.07 16 26 C -0.15 -4.37 10.04 22.29 0.22 -4.15 16 27 C -0.11 -3.45 10.04 22.25 0.22 -3.22 16 28 C -0.16 -6.68 9.01 22.39 0.20 -6.48 16 29 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.05 2.07 4.36 -2.39 -0.01 2.06 16 31 H 0.04 1.88 6.53 -2.39 -0.02 1.87 16 32 H 0.05 1.60 5.68 -2.39 -0.01 1.59 16 33 H 0.08 2.39 5.81 -2.39 -0.01 2.37 16 34 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 35 H 0.06 1.32 6.76 -2.39 -0.02 1.30 16 36 H 0.06 1.88 6.25 -2.39 -0.01 1.87 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.40 5.45 9.12 -74.06 -0.68 4.77 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.78 5.85 -2.39 -0.01 1.77 16 43 H 0.09 1.80 6.41 -2.39 -0.02 1.79 16 44 H 0.01 0.74 6.91 -2.38 -0.02 0.72 16 45 H 0.04 2.13 5.74 -2.39 -0.01 2.11 16 46 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 47 H 0.16 6.33 4.74 -43.52 -0.21 6.12 16 48 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 49 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 50 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 51 H 0.11 5.19 6.14 -2.91 -0.02 5.17 16 Total: -1.00 -64.04 388.64 0.43 -63.61 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.09 Total: 34.57 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 5.58 Total: -9.07 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -5.20 Total: -96.16 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -2.07 Total: -39.17 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.04 0.43 -63.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270719980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.920 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds