Wall clock time and date at job start Tue Mar 31 2020 19:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46895 * 109.47294 * 2 1 4 4 C 1.46895 * 111.00373 * 65.02291 * 3 2 1 5 5 C 1.52998 * 109.47245 * 66.04286 * 4 3 2 6 6 O 1.42900 * 109.46556 * 65.00404 * 5 4 3 7 7 C 1.42902 * 114.00015 * 179.97438 * 6 5 4 8 8 C 1.46904 * 110.99887 * 301.06996 * 3 2 1 9 9 H 1.08999 * 109.47173 * 65.63497 * 8 3 2 10 10 C 1.53001 * 109.47399 * 185.63621 * 8 3 2 11 11 C 1.50705 * 109.47016 * 305.63378 * 8 3 2 12 12 O 1.21286 * 119.99912 * 332.71031 * 11 8 3 13 13 N 1.34773 * 119.99890 * 152.70906 * 11 8 3 14 14 C 1.46493 * 120.00183 * 5.74821 * 13 11 8 15 15 C 1.50708 * 109.46802 * 90.00378 * 14 13 11 16 16 H 1.07994 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99854 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00036 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47396 * 89.99899 * 19 17 15 21 21 H 1.48500 * 109.46912 * 209.99834 * 19 17 15 22 22 H 1.48503 * 109.47038 * 329.99595 * 19 17 15 23 23 C 1.39930 * 119.99724 * 185.75151 * 13 11 8 24 24 C 1.38872 * 120.07276 * 6.79649 * 23 13 11 25 25 C 1.38106 * 119.92885 * 179.76379 * 24 23 13 26 26 C 1.38282 * 120.07181 * 0.48844 * 25 24 23 27 27 C 1.38285 * 120.14056 * 359.76585 * 26 25 24 28 28 C 1.38110 * 120.07160 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47349 * 177.03134 * 1 2 3 30 30 H 1.09003 * 109.47064 * 297.03420 * 1 2 3 31 31 H 1.08998 * 109.47221 * 57.02857 * 1 2 3 32 32 H 1.09000 * 109.47376 * 119.99715 * 2 1 3 33 33 H 1.09002 * 109.47081 * 239.99587 * 2 1 3 34 34 H 1.08999 * 109.47321 * 186.04966 * 4 3 2 35 35 H 1.09002 * 109.46638 * 306.04651 * 4 3 2 36 36 H 1.09005 * 109.47332 * 184.99784 * 5 4 3 37 37 H 1.08995 * 109.47344 * 305.00870 * 5 4 3 38 38 H 1.09008 * 109.46795 * 59.99981 * 7 6 5 39 39 H 1.08992 * 109.47559 * 180.02562 * 7 6 5 40 40 H 1.09005 * 109.47236 * 300.00479 * 7 6 5 41 41 H 1.08995 * 109.47138 * 292.47113 * 10 8 3 42 42 H 1.09008 * 109.46729 * 52.46401 * 10 8 3 43 43 H 1.08992 * 109.47442 * 172.46622 * 10 8 3 44 44 H 1.09001 * 109.47305 * 210.00188 * 14 13 11 45 45 H 1.08999 * 109.47542 * 330.00514 * 14 13 11 46 46 H 0.96999 * 120.00264 * 179.97438 * 18 17 15 47 47 H 1.08004 * 120.03300 * 359.97438 * 24 23 13 48 48 H 1.08005 * 119.96524 * 180.25710 * 25 24 23 49 49 H 1.08002 * 119.93349 * 179.74473 * 26 25 24 50 50 H 1.08001 * 119.96430 * 179.97438 * 27 26 25 51 51 H 1.07991 * 120.03813 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6492 2.0744 1.2431 5 6 2.3813 1.4294 2.4216 6 8 3.7881 1.6365 2.2793 7 6 4.5685 1.0707 3.3342 8 6 1.5278 2.1172 -1.1747 9 1 0.4444 2.2186 -1.1123 10 6 2.1685 3.5060 -1.2151 11 6 1.8903 1.3603 -2.4265 12 8 2.8636 0.6367 -2.4372 13 7 1.1328 1.4874 -3.5339 14 6 0.0331 2.4548 -3.5622 15 6 0.5434 3.7808 -4.0647 16 1 1.5829 3.8919 -4.3355 17 6 -0.3168 4.8525 -4.1777 18 7 -1.5826 4.7174 -3.8474 19 14 0.3159 6.4963 -4.7999 20 1 0.1816 6.5511 -6.2778 21 1 -0.4761 7.5944 -4.1898 22 1 1.7449 6.6501 -4.4265 23 6 1.3968 0.6953 -4.6568 24 6 2.3437 -0.3182 -4.5865 25 6 2.5984 -1.1014 -5.6951 26 6 1.9190 -0.8708 -6.8772 27 6 0.9793 0.1410 -6.9521 28 6 0.7161 0.9243 -5.8455 29 1 -0.3634 -1.0262 -0.0532 30 1 -0.3633 0.4671 0.9154 31 1 -0.3633 0.5593 -0.8621 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.9289 3.1255 1.1728 35 1 0.5730 1.9942 1.3961 36 1 2.0400 1.8816 3.3529 37 1 2.1714 0.3600 2.4385 38 1 4.4039 -0.0063 3.3705 39 1 5.6244 1.2713 3.1529 40 1 4.2724 1.5156 4.2842 41 1 1.8005 4.1004 -0.3789 42 1 3.2518 3.4086 -1.1426 43 1 1.9099 3.9984 -2.1525 44 1 -0.7524 2.0927 -4.2255 45 1 -0.3687 2.5776 -2.5564 46 1 -2.1877 5.4714 -3.9266 47 1 2.8778 -0.4958 -3.6647 48 1 3.3317 -1.8924 -5.6398 49 1 2.1229 -1.4820 -7.7440 50 1 0.4507 0.3188 -7.8770 51 1 -0.0175 1.7145 -5.9047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270773975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:51 Heat of formation + Delta-G solvation = -37.842016 kcal Electronic energy + Delta-G solvation = -30857.640344 eV Core-core repulsion = 26950.804662 eV Total energy + Delta-G solvation = -3906.835682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03762 -40.01475 -38.92698 -37.78641 -36.94807 -34.62954 -33.30546 -31.87328 -31.69531 -30.68531 -29.13477 -28.66087 -27.05253 -25.46598 -25.24461 -24.52887 -23.47584 -22.73805 -21.23436 -19.91294 -18.69831 -18.45341 -18.07128 -17.59546 -17.27848 -16.95160 -16.58833 -16.44687 -16.17593 -15.80240 -15.45688 -15.33910 -15.11417 -14.66650 -14.61583 -14.34366 -14.22215 -13.94965 -13.69628 -13.47772 -13.39715 -13.31718 -13.11723 -13.00266 -12.73637 -12.70510 -12.68136 -12.51972 -12.34881 -12.21796 -12.11552 -12.03079 -11.86395 -11.70479 -11.46824 -10.86271 -10.64476 -10.45789 -10.14064 -9.75042 -9.15558 -8.74968 -8.22080 -6.36591 0.43955 0.59358 1.39455 1.42752 1.51003 1.69988 1.99366 2.39229 2.88914 3.01682 3.05669 3.08609 3.48189 3.97227 3.99823 4.08559 4.17186 4.19948 4.23306 4.30857 4.36063 4.43286 4.45909 4.49575 4.54640 4.60247 4.61586 4.65961 4.67375 4.69850 4.74826 4.85067 4.90761 4.93576 4.96449 5.00118 5.04579 5.09898 5.25251 5.28286 5.39464 5.47573 5.62611 5.65845 5.72663 5.82526 5.95534 5.97644 6.12739 6.33931 6.43895 6.46166 6.73782 7.20100 7.33638 8.81732 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008862 B = 0.004777 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.938346 B = 5859.874040 C = 8004.976614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.043 3.957 3 N -0.516 5.516 4 C 0.045 3.955 5 C 0.071 3.929 6 O -0.405 6.405 7 C 0.027 3.973 8 C 0.083 3.917 9 H 0.064 0.936 10 C -0.140 4.140 11 C 0.522 3.478 12 O -0.540 6.540 13 N -0.543 5.543 14 C 0.246 3.754 15 C -0.535 4.535 16 H 0.048 0.952 17 C 0.034 3.966 18 N -0.913 5.913 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.277 1.277 22 H -0.272 1.272 23 C 0.141 3.859 24 C -0.193 4.193 25 C -0.105 4.105 26 C -0.151 4.151 27 C -0.102 4.102 28 C -0.167 4.167 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.039 0.961 46 H 0.270 0.730 47 H 0.159 0.841 48 H 0.144 0.856 49 H 0.152 0.848 50 H 0.144 0.856 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -8.637 8.839 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.085 4.085 3 N -0.241 5.241 4 C -0.082 4.082 5 C -0.006 4.006 6 O -0.324 6.324 7 C -0.069 4.069 8 C -0.028 4.028 9 H 0.082 0.918 10 C -0.197 4.197 11 C 0.313 3.687 12 O -0.419 6.419 13 N -0.263 5.263 14 C 0.127 3.873 15 C -0.573 4.573 16 H 0.066 0.934 17 C -0.167 4.167 18 N -0.551 5.551 19 Si 0.774 3.226 20 H -0.202 1.202 21 H -0.202 1.202 22 H -0.197 1.197 23 C 0.046 3.954 24 C -0.212 4.212 25 C -0.123 4.123 26 C -0.169 4.169 27 C -0.120 4.120 28 C -0.187 4.187 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.175 0.825 48 H 0.162 0.838 49 H 0.169 0.831 50 H 0.162 0.838 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.956 -8.753 8.761 13.339 hybrid contribution -1.076 1.086 -0.279 1.554 sum 3.880 -7.668 8.481 12.074 Atomic orbital electron populations 1.22405 0.97575 1.02977 1.01743 1.22292 0.93059 0.89969 1.03158 1.62003 1.59549 1.01979 1.00539 1.22359 0.98062 0.99522 0.88304 1.22609 0.81274 0.99812 0.96916 1.88006 1.17991 1.78411 1.47995 1.22850 0.96297 0.97648 0.90128 1.21414 0.98653 0.94561 0.88203 0.91816 1.21833 1.00467 0.93372 1.04042 1.20851 0.81740 0.81095 0.85002 1.90297 1.27713 1.39872 1.84063 1.46015 1.32227 1.36388 1.11651 1.19341 0.83975 0.85982 0.98043 1.21337 0.95555 0.95379 1.45010 0.93383 1.25466 0.94745 1.01596 0.94924 1.69981 1.04283 1.32957 1.47889 0.85699 0.78569 0.79718 0.78656 1.20240 1.20221 1.19665 1.18388 0.97212 0.92196 0.87605 1.22491 0.99960 0.96080 1.02703 1.21374 0.99513 0.98967 0.92436 1.21399 0.97538 0.99223 0.98764 1.21220 0.98116 0.95025 0.97656 1.21109 1.02863 1.02222 0.92555 0.90827 0.90720 0.94858 0.88863 0.92231 0.89868 0.91596 0.90784 0.92577 0.93720 0.89559 0.92883 0.90257 0.92606 0.90991 0.95534 0.94315 0.92124 0.82474 0.83794 0.83072 0.83777 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.05 9.24 71.98 0.67 -4.38 16 2 C 0.04 1.28 5.42 86.30 0.47 1.75 16 3 N -0.52 -16.76 4.29 -875.39 -3.75 -20.51 16 4 C 0.04 1.16 5.01 86.30 0.43 1.59 16 5 C 0.07 1.53 6.00 71.98 0.43 1.96 16 6 O -0.40 -10.73 10.65 -148.98 -1.59 -12.32 16 7 C 0.03 0.49 11.01 113.37 1.25 1.74 16 8 C 0.08 3.12 1.17 44.17 0.05 3.17 16 9 H 0.06 2.49 4.50 -2.39 -0.01 2.48 16 10 C -0.14 -5.30 8.77 71.98 0.63 -4.67 16 11 C 0.52 22.52 5.72 87.66 0.50 23.02 16 12 O -0.54 -24.54 11.55 -3.05 -0.04 -24.57 16 13 N -0.54 -24.44 2.68 -635.30 -1.70 -26.14 16 14 C 0.25 11.84 4.31 85.64 0.37 12.21 16 15 C -0.53 -27.37 7.11 25.60 0.18 -27.18 16 16 H 0.05 2.59 7.68 -2.91 -0.02 2.57 16 17 C 0.03 1.75 5.46 84.66 0.46 2.21 16 18 N -0.91 -48.43 13.29 21.45 0.28 -48.15 16 19 Si 0.95 41.27 29.54 68.60 2.03 43.29 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C 0.14 6.11 6.49 38.15 0.25 6.36 16 24 C -0.19 -7.65 8.99 22.39 0.20 -7.44 16 25 C -0.10 -3.32 10.04 22.25 0.22 -3.10 16 26 C -0.15 -4.33 10.04 22.29 0.22 -4.10 16 27 C -0.10 -3.30 10.04 22.25 0.22 -3.08 16 28 C -0.17 -6.78 9.15 22.39 0.20 -6.57 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.69 6.54 -2.39 -0.02 1.67 16 31 H 0.03 1.07 6.32 -2.39 -0.02 1.05 16 32 H 0.09 2.36 6.17 -2.39 -0.01 2.35 16 33 H 0.06 2.13 5.96 -2.39 -0.01 2.11 16 34 H 0.08 2.25 6.05 -2.39 -0.01 2.23 16 35 H 0.07 1.52 6.24 -2.39 -0.01 1.50 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.06 1.12 6.24 -2.39 -0.01 1.10 16 38 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.08 2.60 6.63 -2.39 -0.02 2.58 16 42 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.07 3.13 5.54 -2.39 -0.01 3.11 16 44 H 0.03 1.36 6.53 -2.39 -0.02 1.35 16 45 H 0.04 1.90 5.77 -2.39 -0.01 1.89 16 46 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 47 H 0.16 6.70 4.69 -48.86 -0.23 6.47 16 48 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 49 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 50 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 51 H 0.12 5.13 6.27 -2.92 -0.02 5.11 16 Total: -1.00 -62.11 389.74 2.72 -59.38 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.72 Total: 35.53 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 6.77 Total: -6.52 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -5.17 Total: -94.80 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.62 Total: -36.89 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -62.11 2.72 -59.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270773975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.541 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds