Wall clock time and date at job start Tue Mar 31 2020 18:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47298 * 2 1 4 4 C 1.46506 * 119.99575 * 269.99900 * 3 2 1 5 5 C 1.50692 * 109.47133 * 269.99790 * 4 3 2 6 6 H 1.07996 * 120.00684 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99955 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99734 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00077 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47081 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46826 * 120.00057 * 9 7 5 12 12 H 1.48494 * 109.47000 * 239.99631 * 9 7 5 13 13 C 1.34774 * 120.00151 * 90.00410 * 3 2 1 14 14 O 1.21280 * 119.99743 * 180.02562 * 13 3 2 15 15 C 1.50692 * 119.99937 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47431 * 180.02562 * 15 13 3 17 17 C 1.46893 * 111.00586 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47001 * 35.00047 * 17 16 15 19 19 C 1.53003 * 109.47339 * 275.00390 * 17 16 15 20 20 C 1.50699 * 109.47494 * 154.99897 * 17 16 15 21 21 C 1.38171 * 120.02521 * 25.00574 * 20 17 16 22 22 C 1.38244 * 120.05436 * 180.30143 * 21 20 17 23 23 C 1.50696 * 119.94465 * 179.70269 * 22 21 20 24 24 C 1.38294 * 120.11199 * 359.44067 * 22 21 20 25 25 C 1.38125 * 120.05036 * 0.55704 * 24 22 21 26 26 C 1.38706 * 120.03077 * 205.02630 * 20 17 16 27 27 O 1.35899 * 120.05784 * 359.95270 * 26 20 17 28 28 C 1.42897 * 117.00306 * 180.02562 * 27 26 20 29 29 H 1.09003 * 109.47110 * 299.99745 * 1 2 3 30 30 H 1.08998 * 109.47153 * 60.00124 * 1 2 3 31 31 H 1.09004 * 109.47400 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46935 * 239.99493 * 2 1 3 33 33 H 1.08999 * 109.47600 * 120.00169 * 2 1 3 34 34 H 1.08998 * 109.47304 * 30.00173 * 4 3 2 35 35 H 1.09005 * 109.46425 * 149.99821 * 4 3 2 36 36 H 0.97001 * 119.99857 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.47394 * 60.00312 * 15 13 3 38 38 H 1.09007 * 109.47836 * 300.00324 * 15 13 3 39 39 H 1.00906 * 110.99711 * 56.04449 * 16 15 13 40 40 H 1.08998 * 109.47218 * 59.99470 * 19 17 16 41 41 H 1.09006 * 109.47087 * 179.97438 * 19 17 16 42 42 H 1.09000 * 109.46794 * 299.99784 * 19 17 16 43 43 H 1.08002 * 119.96962 * 0.02562 * 21 20 17 44 44 H 1.09003 * 109.47547 * 89.98935 * 23 22 21 45 45 H 1.08996 * 109.47057 * 209.99750 * 23 22 21 46 46 H 1.09005 * 109.46844 * 329.99284 * 23 22 21 47 47 H 1.07994 * 119.97164 * 180.26057 * 24 22 21 48 48 H 1.08006 * 120.02441 * 179.70765 * 25 24 22 49 49 H 1.09000 * 109.47471 * 180.02562 * 28 27 26 50 50 H 1.09002 * 109.47042 * 299.99603 * 28 27 26 51 51 H 1.08996 * 109.47358 * 60.00240 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8349 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1493 2.3903 -2.8776 8 7 3.3496 3.1271 -3.6172 9 14 5.9134 2.0961 -3.4172 10 1 6.6003 1.2392 -2.4178 11 1 5.9203 1.4179 -4.7382 12 1 6.6214 3.3969 -3.5249 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3092 2.2064 3.5888 17 6 2.0748 1.5467 4.8801 18 1 2.3258 0.4891 4.7986 19 6 0.6019 1.6928 5.2676 20 6 2.9380 2.1878 5.9360 21 6 3.3677 3.4917 5.7796 22 6 4.1647 4.0784 6.7449 23 6 4.6376 5.4984 6.5686 24 6 4.5244 3.3663 7.8745 25 6 4.0973 2.0626 8.0354 26 6 3.3021 1.4695 7.0653 27 8 2.8803 0.1872 7.2217 28 6 3.2932 -0.4914 8.4095 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6756 3.5176 -4.4432 37 1 2.6213 0.4185 2.5302 38 1 0.9433 1.0125 2.5299 39 1 1.7842 3.0655 3.5214 40 1 -0.0225 1.2290 4.5039 41 1 0.4278 1.2028 6.2256 42 1 0.3509 2.7504 5.3491 43 1 3.0844 4.0514 4.9005 44 1 3.9124 6.1806 7.0123 45 1 5.6024 5.6237 7.0601 46 1 4.7400 5.7179 5.5058 47 1 5.1436 3.8283 8.6291 48 1 4.3824 1.5053 8.9155 49 1 2.8893 -1.5038 8.4087 50 1 4.3819 -0.5351 8.4431 51 1 2.9240 0.0468 9.2824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271636219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:44 Heat of formation + Delta-G solvation = -50.353444 kcal Electronic energy + Delta-G solvation = -29182.070173 eV Core-core repulsion = 25274.691955 eV Total energy + Delta-G solvation = -3907.378218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48832 -39.08844 -37.86706 -36.52315 -35.15710 -32.82913 -32.26377 -31.42435 -30.05191 -29.38152 -28.09240 -27.48837 -25.98880 -25.50831 -23.67087 -22.96992 -22.29146 -21.29718 -20.34714 -18.50621 -17.98520 -16.61726 -16.58508 -16.27656 -15.93026 -15.81944 -15.07694 -14.91519 -14.56642 -14.42939 -14.12527 -14.07632 -13.74646 -13.71108 -13.62404 -13.31574 -13.04519 -12.66605 -12.53666 -12.28627 -12.25642 -12.13035 -11.96818 -11.94075 -11.70527 -11.64199 -11.50164 -11.15482 -11.11303 -10.94923 -10.85746 -10.68313 -10.67923 -10.48788 -10.07736 -9.55896 -8.87026 -8.81642 -8.39164 -8.28612 -8.01871 -7.59012 -5.99806 -4.03828 1.31006 1.37999 3.13694 3.33362 3.40748 3.44488 3.52380 3.65186 3.82174 4.36577 4.50879 4.62514 4.75459 4.83296 4.89751 4.90049 5.09311 5.10754 5.21044 5.21284 5.23395 5.32964 5.34887 5.36565 5.39976 5.46700 5.60013 5.66211 5.68364 5.69760 5.72476 5.78351 5.84786 5.91174 6.01356 6.06003 6.12149 6.25999 6.26264 6.33982 6.50271 6.60397 6.78070 7.00101 7.20312 7.28389 7.48273 7.50442 7.62368 7.97630 8.29357 8.50105 8.96815 9.18833 9.61344 11.08296 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.002802 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.351297 B = 9990.722896 C =11070.773077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.529 6.529 15 C 0.043 3.957 16 N -0.665 5.665 17 C 0.132 3.868 18 H 0.090 0.910 19 C -0.175 4.175 20 C -0.093 4.093 21 C -0.055 4.055 22 C -0.124 4.124 23 C -0.110 4.110 24 C -0.088 4.088 25 C -0.208 4.208 26 C 0.121 3.879 27 O -0.315 6.315 28 C 0.029 3.971 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.350 0.650 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.137 0.863 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.097 0.903 50 H 0.053 0.947 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -6.003 24.724 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.405 6.405 15 C -0.090 4.090 16 N -0.297 5.297 17 C 0.022 3.978 18 H 0.108 0.892 19 C -0.234 4.234 20 C -0.094 4.094 21 C -0.074 4.074 22 C -0.124 4.124 23 C -0.167 4.167 24 C -0.106 4.106 25 C -0.227 4.227 26 C 0.075 3.925 27 O -0.229 6.229 28 C -0.067 4.067 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.170 0.830 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.155 0.845 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.138 0.862 48 H 0.142 0.858 49 H 0.116 0.884 50 H 0.072 0.928 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.709 -5.544 24.376 25.272 hybrid contribution 0.216 -0.340 -0.080 0.411 sum -3.493 -5.884 24.296 25.242 Atomic orbital electron populations 1.22220 0.96934 1.01321 1.02201 1.21394 0.93366 0.84389 1.02628 1.48246 1.64058 1.13207 1.07713 1.19242 0.96201 0.93598 0.78141 1.21494 0.96971 1.31597 1.06113 0.92411 1.24936 0.97810 0.94973 0.96445 1.69945 1.35585 1.33642 1.14374 0.86452 0.84755 0.78059 0.78229 1.19785 1.21050 1.20890 1.20185 0.78783 0.87116 0.84865 1.90664 1.44901 1.17996 1.86956 1.21915 0.99939 0.96706 0.90390 1.60201 1.62864 1.06954 0.99704 1.20205 0.92059 0.98264 0.87235 0.89186 1.22448 0.96538 1.02210 1.02171 1.19101 1.02154 0.94179 0.93985 1.20833 0.95160 0.93420 0.97950 1.19862 1.00238 0.97106 0.95170 1.20727 1.00668 0.92365 1.02941 1.20758 0.99193 0.93551 0.97137 1.21085 1.04021 0.97228 1.00336 1.18766 0.95324 0.83772 0.94609 1.86058 1.71145 1.23550 1.42150 1.23009 1.00243 0.97153 0.86255 0.93241 0.92051 0.92241 0.89993 0.91840 0.95136 0.93966 0.92854 0.88761 0.92937 0.83016 0.92383 0.91772 0.92338 0.84501 0.91621 0.91960 0.91156 0.86232 0.85816 0.88438 0.92813 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.15 0.38 -1.87 16 2 C 0.11 1.72 5.93 -4.05 -0.02 1.69 16 3 N -0.60 -12.73 2.46 -175.07 -0.43 -13.16 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -15.08 9.39 -34.44 -0.32 -15.41 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 9 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.50 10.59 7.71 -10.99 -0.08 10.50 16 14 O -0.53 -13.42 15.78 5.56 0.09 -13.33 16 15 C 0.04 0.66 4.52 -4.98 -0.02 0.64 16 16 N -0.67 -9.93 4.88 -109.22 -0.53 -10.46 16 17 C 0.13 1.66 2.52 -68.87 -0.17 1.48 16 18 H 0.09 1.16 7.35 -51.93 -0.38 0.78 16 19 C -0.17 -1.85 9.14 37.16 0.34 -1.51 16 20 C -0.09 -1.20 5.07 -104.47 -0.53 -1.73 16 21 C -0.06 -0.72 8.97 -39.60 -0.36 -1.08 16 22 C -0.12 -1.44 5.88 -104.60 -0.62 -2.06 16 23 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 24 C -0.09 -0.93 9.70 -39.60 -0.38 -1.31 16 25 C -0.21 -2.19 9.04 -39.43 -0.36 -2.54 16 26 C 0.12 1.44 6.66 -39.22 -0.26 1.18 16 27 O -0.32 -3.42 9.63 -19.42 -0.19 -3.61 16 28 C 0.03 0.20 9.81 101.05 0.99 1.19 16 29 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.09 1.37 7.32 -51.93 -0.38 0.99 16 38 H 0.05 0.69 6.48 -51.92 -0.34 0.35 16 39 H 0.35 5.25 7.60 -39.29 -0.30 4.95 16 40 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 43 H 0.14 1.86 6.89 -52.49 -0.36 1.50 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 46 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 48 H 0.12 1.00 6.30 -52.48 -0.33 0.67 16 49 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 51 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 LS Contribution 413.21 15.07 6.23 6.23 Total: -1.00 -34.34 413.21 -8.85 -43.19 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.55 Total: 3.50 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.18 Total: -3.40 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.23 Total: -49.86 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.10 Total: -16.94 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.34 -8.85 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271636219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.164 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds