Wall clock time and date at job start Tue Mar 31 2020 18:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47403 * 2 1 4 4 C 1.46504 * 120.00234 * 270.00026 * 3 2 1 5 5 C 1.50705 * 109.46992 * 270.00246 * 4 3 2 6 6 H 1.07997 * 119.99954 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99623 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00081 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47097 * 89.99675 * 9 7 5 11 11 H 1.48502 * 109.47149 * 209.99781 * 9 7 5 12 12 H 1.48501 * 109.47173 * 329.99939 * 9 7 5 13 13 C 1.34781 * 120.00131 * 90.00109 * 3 2 1 14 14 O 1.21285 * 120.00058 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99778 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47047 * 180.02562 * 15 13 3 17 17 C 1.46908 * 110.99959 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.46974 * 34.99545 * 17 16 15 19 19 C 1.52996 * 109.47026 * 154.99730 * 17 16 15 20 20 C 1.52997 * 109.47131 * 294.99498 * 19 17 16 21 21 C 1.53006 * 109.47127 * 180.02562 * 20 19 17 22 22 O 1.42895 * 109.47036 * 179.97438 * 21 20 19 23 23 C 1.50702 * 109.46581 * 274.99702 * 17 16 15 24 24 C 1.38235 * 119.99874 * 319.72239 * 23 17 16 25 25 C 1.38237 * 119.99581 * 179.78931 * 24 23 17 26 26 C 1.38236 * 120.00393 * 0.44551 * 25 24 23 27 27 C 1.38239 * 119.99260 * 359.81302 * 26 25 24 28 28 C 1.38226 * 120.00609 * 359.97399 * 27 26 25 29 29 H 1.09001 * 109.47595 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46919 * 299.99798 * 1 2 3 31 31 H 1.09000 * 109.47263 * 59.99853 * 1 2 3 32 32 H 1.09002 * 109.47023 * 239.99433 * 2 1 3 33 33 H 1.09007 * 109.46893 * 120.00236 * 2 1 3 34 34 H 1.09004 * 109.46879 * 29.99741 * 4 3 2 35 35 H 1.09003 * 109.47202 * 150.00097 * 4 3 2 36 36 H 0.97006 * 120.00003 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47348 * 59.99532 * 15 13 3 38 38 H 1.09002 * 109.46717 * 299.99748 * 15 13 3 39 39 H 1.00904 * 110.99979 * 303.94519 * 16 15 13 40 40 H 1.09001 * 109.46993 * 174.99367 * 19 17 16 41 41 H 1.09004 * 109.47298 * 54.99781 * 19 17 16 42 42 H 1.09001 * 109.46832 * 60.00325 * 20 19 17 43 43 H 1.08993 * 109.47194 * 299.99846 * 20 19 17 44 44 H 1.09001 * 109.46801 * 300.00272 * 21 20 19 45 45 H 1.09001 * 109.46998 * 59.99868 * 21 20 19 46 46 H 0.96700 * 114.00205 * 179.97438 * 22 21 20 47 47 H 1.07998 * 120.00209 * 0.02562 * 24 23 17 48 48 H 1.08009 * 119.99914 * 180.27413 * 25 24 23 49 49 H 1.07995 * 120.00232 * 179.83143 * 26 25 24 50 50 H 1.08007 * 119.99100 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.00727 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2306 -1.0958 7 6 4.1492 2.3895 -2.8780 8 7 3.3489 3.1248 -3.6185 9 14 5.9135 2.0964 -3.4169 10 1 5.9775 0.8750 -4.2592 11 1 6.3922 3.2636 -4.2004 12 1 6.7736 1.9176 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3100 2.2061 3.5888 17 6 2.0776 1.5454 4.8802 18 1 2.3300 0.4882 4.7981 19 6 2.9541 2.1973 5.9515 20 6 4.4279 1.9452 5.6275 21 6 5.3044 2.5965 6.6992 22 8 6.6809 2.3606 6.3968 23 6 0.6270 1.6874 5.2631 24 6 -0.0341 2.8801 5.0368 25 6 -1.3659 3.0088 5.3841 26 6 -2.0342 1.9479 5.9661 27 6 -1.3715 0.7569 6.1972 28 6 -0.0410 0.6267 5.8460 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0957 3.1410 -1.1384 36 1 3.6748 3.5147 -4.4448 37 1 2.6228 0.4186 2.5298 38 1 0.9445 1.0114 2.5302 39 1 3.2581 2.5448 3.5218 40 1 2.7175 1.7679 6.9251 41 1 2.7649 3.2706 5.9722 42 1 4.6644 2.3746 4.6539 43 1 4.6170 0.8720 5.6069 44 1 5.1153 3.6698 6.7202 45 1 5.0678 2.1668 7.6726 46 1 7.2957 2.7464 7.0358 47 1 0.4889 3.7101 4.5852 48 1 -1.8837 3.9393 5.2032 49 1 -3.0739 2.0494 6.2398 50 1 -1.8936 -0.0719 6.6524 51 1 0.4768 -0.3036 6.0270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271856945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:48 Heat of formation + Delta-G solvation = -68.071698 kcal Electronic energy + Delta-G solvation = -29207.701862 eV Core-core repulsion = 25299.555323 eV Total energy + Delta-G solvation = -3908.146539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.79143 -38.89256 -37.58163 -36.41745 -35.17865 -33.08241 -32.62265 -31.36186 -30.86768 -30.03978 -28.33897 -27.10788 -25.17469 -23.76677 -22.97274 -22.60383 -22.14308 -21.51371 -20.32793 -18.36871 -17.52074 -16.94454 -16.51973 -16.35549 -16.16931 -15.79014 -15.51377 -15.09523 -14.96816 -14.46693 -14.21932 -13.96808 -13.71235 -13.51337 -13.35004 -13.27773 -13.10300 -12.83314 -12.71880 -12.35919 -12.06527 -11.99140 -11.93028 -11.73993 -11.44195 -11.19133 -11.14429 -11.13236 -10.97813 -10.87573 -10.80338 -10.69700 -10.49055 -10.19156 -10.09571 -9.59447 -8.92662 -8.87737 -8.72619 -8.40418 -8.33951 -7.59873 -6.01012 -4.05609 1.30749 1.41339 3.31947 3.38598 3.42480 3.51620 3.70460 3.76887 3.96872 4.34794 4.48592 4.63631 4.72410 4.81577 4.87946 4.96706 5.05012 5.12465 5.14464 5.18316 5.28918 5.31782 5.33416 5.37516 5.46824 5.50038 5.55046 5.59399 5.62256 5.68700 5.72484 5.86878 5.95005 5.96078 6.05743 6.07683 6.08549 6.26978 6.41975 6.51984 6.53222 6.58518 6.95859 7.00078 7.17789 7.39013 7.44935 7.50815 7.61100 7.95954 8.27700 8.49475 8.94495 9.17569 9.59515 11.06953 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009143 B = 0.003359 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.747559 B = 8332.660735 C =10581.224521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.529 6.529 15 C 0.042 3.958 16 N -0.665 5.665 17 C 0.128 3.872 18 H 0.053 0.947 19 C -0.112 4.112 20 C -0.128 4.128 21 C 0.078 3.922 22 O -0.574 6.574 23 C -0.075 4.075 24 C -0.082 4.082 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.119 4.119 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.355 0.645 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.378 0.622 47 H 0.133 0.867 48 H 0.119 0.881 49 H 0.116 0.884 50 H 0.117 0.883 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.375 -6.232 23.246 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.405 6.405 15 C -0.090 4.090 16 N -0.300 5.300 17 C 0.018 3.982 18 H 0.071 0.929 19 C -0.150 4.150 20 C -0.165 4.165 21 C 0.000 4.000 22 O -0.380 6.380 23 C -0.076 4.076 24 C -0.100 4.100 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.137 4.137 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.178 0.822 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.151 0.849 48 H 0.137 0.863 49 H 0.134 0.866 50 H 0.135 0.865 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.017 -5.503 22.516 24.217 hybrid contribution 1.762 -0.610 0.032 1.865 sum -5.255 -6.113 22.548 23.945 Atomic orbital electron populations 1.22218 0.96821 1.01307 1.02372 1.21391 0.93504 0.84346 1.02471 1.48240 1.64045 1.13165 1.07718 1.19240 0.96118 0.93648 0.78128 1.21441 0.96974 1.31798 1.06186 0.92571 1.24930 0.97796 0.94945 0.96435 1.69934 1.35660 1.33509 1.14270 0.86514 0.84787 0.77637 0.78579 1.20693 1.21097 1.19907 1.20162 0.78815 0.87066 0.84855 1.90669 1.45191 1.17734 1.86956 1.21931 1.02330 0.94242 0.90485 1.60151 1.32921 1.37487 0.99474 1.20391 0.91458 0.96765 0.89564 0.92888 1.21643 0.92761 1.02352 0.98278 1.21615 0.93561 1.01694 0.99670 1.22151 0.81547 0.98952 0.97323 1.86512 1.16476 1.80352 1.54618 1.19824 0.95215 0.93988 0.98532 1.21134 0.93988 0.97933 0.96985 1.21227 0.95050 0.98868 0.99297 1.21124 0.99669 0.93663 0.99821 1.21029 0.94711 0.97660 1.01095 1.20999 0.94734 0.98288 0.99727 0.92289 0.93043 0.92034 0.90026 0.92004 0.95139 0.93915 0.92763 0.93002 0.88852 0.82248 0.90923 0.90340 0.90585 0.91239 0.93431 0.93840 0.77503 0.84943 0.86303 0.86566 0.86487 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.76 5.93 -4.05 -0.02 1.73 16 3 N -0.60 -12.81 2.46 -175.05 -0.43 -13.24 16 4 C 0.25 6.57 5.16 -5.19 -0.03 6.55 16 5 C -0.53 -15.07 9.39 -34.44 -0.32 -15.40 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 13 C 0.51 10.63 7.71 -10.98 -0.08 10.54 16 14 O -0.53 -13.44 15.78 5.55 0.09 -13.35 16 15 C 0.04 0.65 4.51 -4.98 -0.02 0.63 16 16 N -0.67 -9.40 5.19 -109.22 -0.57 -9.97 16 17 C 0.13 1.40 2.24 -68.86 -0.15 1.24 16 18 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 19 C -0.11 -1.04 4.78 -26.73 -0.13 -1.17 16 20 C -0.13 -1.28 5.41 -26.73 -0.14 -1.43 16 21 C 0.08 0.69 7.05 37.16 0.26 0.96 16 22 O -0.57 -5.93 13.66 -35.23 -0.48 -6.41 16 23 C -0.07 -0.84 4.71 -104.62 -0.49 -1.33 16 24 C -0.08 -0.99 9.32 -39.58 -0.37 -1.36 16 25 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 27 C -0.13 -1.20 10.05 -39.59 -0.40 -1.60 16 28 C -0.12 -1.19 9.67 -39.59 -0.38 -1.57 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.71 7.22 -51.93 -0.38 0.33 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 33 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.05 0.72 7.31 -51.93 -0.38 0.34 16 38 H 0.09 1.35 7.04 -51.93 -0.37 0.98 16 39 H 0.35 5.37 6.17 -39.29 -0.24 5.13 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.92 6.42 -51.93 -0.33 0.58 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.38 2.08 9.12 45.56 0.42 2.49 16 47 H 0.13 1.74 7.73 -52.49 -0.41 1.33 16 48 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 49 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 50 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 51 H 0.12 0.96 8.04 -52.49 -0.42 0.54 16 LS Contribution 416.97 15.07 6.28 6.28 Total: -1.00 -34.89 416.97 -10.03 -44.92 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.84 Total: 6.71 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.80 Total: -5.89 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.26 Total: -49.39 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.39 Total: -19.77 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.89 -10.03 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271856945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.155 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds