Wall clock time and date at job start Tue Mar 31 2020 18:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47403 * 2 1 4 4 C 1.46504 * 120.00234 * 270.00026 * 3 2 1 5 5 C 1.50705 * 109.46992 * 270.00246 * 4 3 2 6 6 H 1.07997 * 119.99954 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99623 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00081 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47097 * 89.99675 * 9 7 5 11 11 H 1.48502 * 109.47149 * 209.99781 * 9 7 5 12 12 H 1.48501 * 109.47173 * 329.99939 * 9 7 5 13 13 C 1.34781 * 120.00131 * 90.00109 * 3 2 1 14 14 O 1.21285 * 120.00058 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99778 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47047 * 180.02562 * 15 13 3 17 17 C 1.46908 * 110.99959 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.46974 * 34.99545 * 17 16 15 19 19 C 1.52996 * 109.47026 * 154.99730 * 17 16 15 20 20 C 1.52997 * 109.47131 * 294.99498 * 19 17 16 21 21 C 1.53006 * 109.47127 * 180.02562 * 20 19 17 22 22 O 1.42895 * 109.47036 * 179.97438 * 21 20 19 23 23 C 1.50702 * 109.46581 * 274.99702 * 17 16 15 24 24 C 1.38235 * 119.99874 * 319.72239 * 23 17 16 25 25 C 1.38237 * 119.99581 * 179.78931 * 24 23 17 26 26 C 1.38236 * 120.00393 * 0.44551 * 25 24 23 27 27 C 1.38239 * 119.99260 * 359.81302 * 26 25 24 28 28 C 1.38226 * 120.00609 * 359.97399 * 27 26 25 29 29 H 1.09001 * 109.47595 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46919 * 299.99798 * 1 2 3 31 31 H 1.09000 * 109.47263 * 59.99853 * 1 2 3 32 32 H 1.09002 * 109.47023 * 239.99433 * 2 1 3 33 33 H 1.09007 * 109.46893 * 120.00236 * 2 1 3 34 34 H 1.09004 * 109.46879 * 29.99741 * 4 3 2 35 35 H 1.09003 * 109.47202 * 150.00097 * 4 3 2 36 36 H 0.97006 * 120.00003 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47348 * 59.99532 * 15 13 3 38 38 H 1.09002 * 109.46717 * 299.99748 * 15 13 3 39 39 H 1.00904 * 110.99979 * 303.94519 * 16 15 13 40 40 H 1.09001 * 109.46993 * 174.99367 * 19 17 16 41 41 H 1.09004 * 109.47298 * 54.99781 * 19 17 16 42 42 H 1.09001 * 109.46832 * 60.00325 * 20 19 17 43 43 H 1.08993 * 109.47194 * 299.99846 * 20 19 17 44 44 H 1.09001 * 109.46801 * 300.00272 * 21 20 19 45 45 H 1.09001 * 109.46998 * 59.99868 * 21 20 19 46 46 H 0.96700 * 114.00205 * 179.97438 * 22 21 20 47 47 H 1.07998 * 120.00209 * 0.02562 * 24 23 17 48 48 H 1.08009 * 119.99914 * 180.27413 * 25 24 23 49 49 H 1.07995 * 120.00232 * 179.83143 * 26 25 24 50 50 H 1.08007 * 119.99100 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.00727 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2306 -1.0958 7 6 4.1492 2.3895 -2.8780 8 7 3.3489 3.1248 -3.6185 9 14 5.9135 2.0964 -3.4169 10 1 5.9775 0.8750 -4.2592 11 1 6.3922 3.2636 -4.2004 12 1 6.7736 1.9176 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3100 2.2061 3.5888 17 6 2.0776 1.5454 4.8802 18 1 2.3300 0.4882 4.7981 19 6 2.9541 2.1973 5.9515 20 6 4.4279 1.9452 5.6275 21 6 5.3044 2.5965 6.6992 22 8 6.6809 2.3606 6.3968 23 6 0.6270 1.6874 5.2631 24 6 -0.0341 2.8801 5.0368 25 6 -1.3659 3.0088 5.3841 26 6 -2.0342 1.9479 5.9661 27 6 -1.3715 0.7569 6.1972 28 6 -0.0410 0.6267 5.8460 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0957 3.1410 -1.1384 36 1 3.6748 3.5147 -4.4448 37 1 2.6228 0.4186 2.5298 38 1 0.9445 1.0114 2.5302 39 1 3.2581 2.5448 3.5218 40 1 2.7175 1.7679 6.9251 41 1 2.7649 3.2706 5.9722 42 1 4.6644 2.3746 4.6539 43 1 4.6170 0.8720 5.6069 44 1 5.1153 3.6698 6.7202 45 1 5.0678 2.1668 7.6726 46 1 7.2957 2.7464 7.0358 47 1 0.4889 3.7101 4.5852 48 1 -1.8837 3.9393 5.2032 49 1 -3.0739 2.0494 6.2398 50 1 -1.8936 -0.0719 6.6524 51 1 0.4768 -0.3036 6.0270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271856945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:47 Heat of formation + Delta-G solvation = -92.118075 kcal Electronic energy + Delta-G solvation = -29208.744591 eV Core-core repulsion = 25299.555323 eV Total energy + Delta-G solvation = -3909.189268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.92925 -40.20691 -38.36856 -37.35790 -36.83926 -34.94980 -33.88043 -32.23520 -31.65975 -31.57357 -29.71644 -28.49531 -26.59824 -24.70317 -24.51512 -23.83879 -23.29215 -22.26291 -21.16348 -19.95983 -18.63423 -18.30451 -17.93547 -17.62046 -17.40247 -16.91749 -16.79465 -16.31898 -16.00535 -15.93132 -15.39513 -14.90188 -14.81786 -14.74116 -14.61246 -14.27661 -14.17159 -14.09190 -13.75324 -13.56200 -13.51773 -13.33465 -13.18312 -13.03120 -12.76381 -12.67357 -12.60781 -12.46151 -12.17201 -11.95343 -11.93278 -11.89451 -11.75138 -11.71314 -11.59658 -10.88467 -10.64789 -10.56114 -9.70199 -9.53418 -9.44422 -9.39759 -8.22630 -6.37746 0.53524 0.63217 1.35089 1.38461 1.48745 1.86269 2.24445 2.41564 2.94697 3.06457 3.15994 3.34715 3.69048 3.87996 3.96803 4.05675 4.08672 4.13127 4.27852 4.28398 4.34688 4.36259 4.41108 4.44088 4.49734 4.56487 4.64381 4.64687 4.72407 4.79082 4.83898 4.91712 4.93106 4.97329 5.04197 5.17053 5.21306 5.22101 5.29009 5.30603 5.37013 5.57620 5.66554 5.71323 5.75223 5.86907 6.06147 6.08265 6.21279 6.34008 6.70347 6.82842 6.89609 7.28409 7.51940 8.84400 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009143 B = 0.003359 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.747559 B = 8332.660735 C =10581.224521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.495 3.505 14 O -0.585 6.585 15 C 0.063 3.937 16 N -0.680 5.680 17 C 0.132 3.868 18 H 0.068 0.932 19 C -0.102 4.102 20 C -0.125 4.125 21 C 0.076 3.924 22 O -0.600 6.600 23 C -0.083 4.083 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.120 4.120 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.347 0.653 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.109 0.891 48 H 0.124 0.876 49 H 0.137 0.863 50 H 0.143 0.857 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 -9.179 25.431 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.069 4.069 16 N -0.314 5.314 17 C 0.022 3.978 18 H 0.086 0.914 19 C -0.140 4.140 20 C -0.163 4.163 21 C -0.001 4.001 22 O -0.409 6.409 23 C -0.084 4.084 24 C -0.122 4.122 25 C -0.158 4.158 26 C -0.146 4.146 27 C -0.144 4.144 28 C -0.138 4.138 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.168 0.832 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.247 0.753 47 H 0.127 0.873 48 H 0.142 0.858 49 H 0.155 0.845 50 H 0.161 0.839 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.191 -8.496 24.733 27.122 hybrid contribution 1.743 0.332 -0.609 1.876 sum -5.448 -8.164 24.123 26.044 Atomic orbital electron populations 1.22137 0.94744 1.03433 1.01450 1.21725 0.95181 0.81441 1.03829 1.48275 1.64123 1.15053 1.06220 1.18658 0.95234 0.91378 0.80424 1.21704 0.97848 1.32002 1.06516 0.92917 1.25871 1.02439 0.94442 0.96437 1.70058 1.37807 1.34229 1.14736 0.85408 0.78928 0.78227 0.78191 1.18704 1.20620 1.19831 1.21235 0.77322 0.86665 0.86447 1.90633 1.47607 1.20392 1.87900 1.21776 1.03637 0.94115 0.87419 1.60136 1.32484 1.38194 1.00600 1.20470 0.91874 0.97294 0.88115 0.91386 1.21559 0.91894 1.01803 0.98702 1.21578 0.94363 1.01588 0.98792 1.22208 0.80876 0.99221 0.97807 1.86455 1.17486 1.80882 1.56096 1.19864 0.95209 0.94112 0.99203 1.21067 0.94759 0.98018 0.98376 1.21385 0.94796 0.99828 0.99752 1.21415 1.00701 0.93411 0.99107 1.21388 0.94661 0.98144 1.00241 1.21254 0.95053 0.98530 0.98946 0.88530 0.92610 0.94328 0.90877 0.88375 0.96214 0.98828 0.92419 0.90557 0.87205 0.83190 0.88749 0.91316 0.93328 0.91126 0.93178 0.91524 0.75336 0.87294 0.85843 0.84531 0.83898 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.24 71.98 0.74 -3.44 16 2 C 0.10 3.16 5.93 86.38 0.51 3.68 16 3 N -0.60 -26.50 2.46 -826.13 -2.03 -28.53 16 4 C 0.26 14.79 5.16 85.63 0.44 15.23 16 5 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 9 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 13 C 0.49 21.37 7.71 87.66 0.68 22.05 16 14 O -0.59 -31.50 15.78 -3.04 -0.05 -31.55 16 15 C 0.06 1.85 4.51 85.56 0.39 2.24 16 16 N -0.68 -19.22 5.19 -499.46 -2.59 -21.81 16 17 C 0.13 2.66 2.24 44.17 0.10 2.76 16 18 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 19 C -0.10 -1.75 4.78 30.59 0.15 -1.61 16 20 C -0.13 -2.42 5.41 30.60 0.17 -2.25 16 21 C 0.08 1.26 7.05 71.98 0.51 1.77 16 22 O -0.60 -11.87 13.66 -148.98 -2.03 -13.90 16 23 C -0.08 -1.71 4.71 -19.86 -0.09 -1.81 16 24 C -0.10 -2.49 9.32 22.27 0.21 -2.28 16 25 C -0.14 -2.93 10.05 22.27 0.22 -2.70 16 26 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 27 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 28 C -0.12 -1.98 9.67 22.27 0.22 -1.76 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.41 7.22 -2.39 -0.02 1.40 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 33 H 0.10 2.38 6.44 -2.38 -0.02 2.37 16 34 H 0.02 1.13 8.07 -2.38 -0.02 1.11 16 35 H -0.01 -0.42 7.42 -2.39 -0.02 -0.43 16 36 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 37 H 0.08 1.91 7.31 -2.39 -0.02 1.89 16 38 H 0.11 2.92 7.04 -2.39 -0.02 2.90 16 39 H 0.35 10.87 6.17 -89.69 -0.55 10.32 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.05 1.20 6.42 -2.39 -0.02 1.19 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.40 3.94 9.12 -74.06 -0.68 3.26 16 47 H 0.11 3.06 7.73 -2.91 -0.02 3.03 16 48 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 49 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 50 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 51 H 0.14 1.65 8.04 -2.91 -0.02 1.63 16 Total: -1.00 -80.12 416.97 0.67 -79.45 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.31 Total: 28.41 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.37 Total: -2.82 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -4.33 Total: -107.53 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -2.08 Total: -45.45 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -80.12 0.67 -79.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271856945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.669 kcal (2) G-P(sol) polarization free energy of solvation -80.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds