Wall clock time and date at job start Tue Mar 31 2020 18:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47006 * 2 1 4 4 C 1.46497 * 120.00285 * 270.00400 * 3 2 1 5 5 C 1.50701 * 109.46949 * 270.00001 * 4 3 2 6 6 H 1.07997 * 120.00357 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99788 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00244 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99749 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47192 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47512 * 119.99882 * 9 7 5 12 12 H 1.48509 * 109.46625 * 239.99938 * 9 7 5 13 13 C 1.34780 * 119.99887 * 90.00128 * 3 2 1 14 14 O 1.21279 * 120.00036 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00052 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47227 * 180.02562 * 15 13 3 17 17 C 1.46903 * 110.99983 * 185.30164 * 16 15 13 18 18 H 1.09001 * 109.47061 * 33.54061 * 17 16 15 19 19 C 1.52999 * 109.46881 * 273.53707 * 17 16 15 20 20 C 1.53003 * 109.46855 * 174.66254 * 19 17 16 21 21 C 1.53005 * 109.46826 * 185.07170 * 20 19 17 22 22 O 1.42899 * 109.46664 * 180.02562 * 21 20 19 23 23 C 1.50699 * 109.47112 * 153.53875 * 17 16 15 24 24 C 1.38235 * 119.99937 * 39.72403 * 23 17 16 25 25 C 1.38240 * 120.00060 * 179.78646 * 24 23 17 26 26 C 1.38241 * 119.99646 * 0.44202 * 25 24 23 27 27 C 1.38232 * 120.00181 * 359.81325 * 26 25 24 28 28 C 1.38233 * 120.00196 * 219.99738 * 23 17 16 29 29 H 1.09004 * 109.47023 * 299.99363 * 1 2 3 30 30 H 1.08996 * 109.47748 * 59.99799 * 1 2 3 31 31 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47029 * 240.00402 * 2 1 3 33 33 H 1.09003 * 109.47464 * 119.99903 * 2 1 3 34 34 H 1.09006 * 109.47139 * 29.99393 * 4 3 2 35 35 H 1.08997 * 109.47626 * 149.99645 * 4 3 2 36 36 H 0.96994 * 119.99749 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47333 * 59.99832 * 15 13 3 38 38 H 1.09002 * 109.46778 * 299.99798 * 15 13 3 39 39 H 1.00894 * 111.00070 * 61.34402 * 16 15 13 40 40 H 1.09001 * 109.46638 * 54.66899 * 19 17 16 41 41 H 1.09002 * 109.47462 * 294.66501 * 19 17 16 42 42 H 1.08999 * 109.46875 * 65.07151 * 20 19 17 43 43 H 1.08992 * 109.47282 * 305.06819 * 20 19 17 44 44 H 1.09001 * 109.46805 * 300.00027 * 21 20 19 45 45 H 1.08999 * 109.47409 * 60.00309 * 21 20 19 46 46 H 0.96705 * 113.99441 * 180.02562 * 22 21 20 47 47 H 1.08002 * 120.00352 * 359.97438 * 24 23 17 48 48 H 1.07998 * 120.00082 * 180.28098 * 25 24 23 49 49 H 1.07991 * 119.99767 * 179.83113 * 26 25 24 50 50 H 1.07999 * 120.00112 * 179.97438 * 27 26 25 51 51 H 1.08006 * 119.99519 * 359.97438 * 28 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3907 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9132 2.0966 -3.4171 10 1 6.6006 1.2406 -2.4172 11 1 5.9203 1.4186 -4.7382 12 1 6.6213 3.3976 -3.5246 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3098 2.2062 3.5889 17 6 2.1979 1.5077 4.8764 18 1 2.4934 0.4660 4.7515 19 6 0.7503 1.5721 5.3673 20 6 0.6052 0.7333 6.6387 21 6 -0.8656 0.6941 7.0586 22 8 -1.0010 -0.0888 8.2464 23 6 3.1006 2.1682 5.8863 24 6 3.2137 3.5456 5.9157 25 6 4.0384 4.1518 6.8450 26 6 4.7569 3.3800 7.7389 27 6 4.6479 2.0024 7.7060 28 6 3.8199 1.3965 6.7796 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0953 3.1411 -1.1384 36 1 3.6752 3.5173 -4.4433 37 1 2.6229 0.4187 2.5298 38 1 0.9445 1.0114 2.5302 39 1 1.7227 3.0264 3.5702 40 1 0.0874 1.1801 4.5959 41 1 0.4852 2.6072 5.5827 42 1 1.1993 1.1780 7.4370 43 1 0.9554 -0.2808 6.4469 44 1 -1.2158 1.7083 7.2505 45 1 -1.4597 0.2494 6.2603 46 1 -1.9094 -0.1575 8.5707 47 1 2.6555 4.1484 5.2147 48 1 4.1233 5.2281 6.8709 49 1 5.4033 3.8533 8.4631 50 1 5.2096 1.3994 8.4041 51 1 3.7345 0.3201 6.7539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271856947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:52 Heat of formation + Delta-G solvation = -68.213586 kcal Electronic energy + Delta-G solvation = -28947.022365 eV Core-core repulsion = 25038.869673 eV Total energy + Delta-G solvation = -3908.152692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.84841 -38.95250 -37.56062 -36.51053 -35.21415 -33.25899 -32.69732 -31.19580 -30.87832 -30.08496 -28.33076 -27.04634 -25.40236 -23.56790 -23.00981 -22.72655 -22.01322 -21.75685 -20.46552 -18.45555 -17.66781 -17.17372 -16.49659 -16.24383 -16.09214 -15.88407 -15.32484 -15.04826 -14.94324 -14.64120 -14.34269 -13.97229 -13.81107 -13.62319 -13.38596 -13.35093 -13.18986 -12.75455 -12.62382 -12.42723 -12.14913 -11.99816 -11.95191 -11.68517 -11.58034 -11.45599 -11.23668 -11.16791 -10.95162 -10.89021 -10.80815 -10.71373 -10.51877 -10.30793 -10.09915 -9.58339 -8.91113 -8.88568 -8.73419 -8.41204 -8.29756 -7.62308 -6.01911 -4.06042 1.35460 1.43131 3.31870 3.39264 3.42279 3.48864 3.63997 3.76717 3.93861 4.34418 4.48268 4.55318 4.68482 4.75966 4.85355 4.96487 5.00849 5.05298 5.11175 5.13835 5.23235 5.26406 5.29223 5.33078 5.37097 5.44781 5.49806 5.58485 5.60250 5.65488 5.66940 5.76673 5.88685 5.92706 6.00059 6.01736 6.07215 6.22199 6.44419 6.45744 6.52498 6.56930 6.90662 7.01322 7.14725 7.25914 7.37049 7.47175 7.59163 7.95374 8.26834 8.46632 8.94465 9.15908 9.59243 11.06217 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.002823 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.036294 B = 9916.411853 C =11661.196144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.526 6.526 15 C 0.042 3.958 16 N -0.661 5.661 17 C 0.129 3.871 18 H 0.087 0.913 19 C -0.144 4.144 20 C -0.115 4.115 21 C 0.075 3.925 22 O -0.576 6.576 23 C -0.062 4.062 24 C -0.094 4.094 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.115 4.115 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.350 0.650 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.378 0.622 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.548 -6.550 22.949 25.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.402 6.402 15 C -0.091 4.091 16 N -0.292 5.292 17 C 0.018 3.982 18 H 0.105 0.895 19 C -0.183 4.183 20 C -0.154 4.154 21 C -0.003 4.003 22 O -0.381 6.381 23 C -0.063 4.063 24 C -0.112 4.112 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.133 4.133 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.170 0.830 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.135 0.865 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.000 -5.966 22.586 24.387 hybrid contribution -0.587 -0.205 -0.371 0.724 sum -7.587 -6.172 22.215 24.273 Atomic orbital electron populations 1.22221 0.96947 1.01313 1.02188 1.21391 0.93346 0.84411 1.02614 1.48254 1.64119 1.13184 1.07719 1.19243 0.96223 0.93585 0.78116 1.21486 0.96943 1.31659 1.06119 0.92431 1.24935 0.97824 0.94954 0.96443 1.69940 1.35587 1.33636 1.14368 0.86455 0.84729 0.78077 0.78241 1.19780 1.21024 1.20887 1.20164 0.78898 0.87153 0.84795 1.90676 1.44673 1.17962 1.86912 1.21946 0.99908 0.96565 0.90640 1.60142 1.60892 1.08345 0.99810 1.20505 0.91950 0.97829 0.87870 0.89469 1.22268 0.97538 1.01015 0.97461 1.21473 0.95191 1.00994 0.97709 1.22230 0.97535 0.94028 0.86498 1.86483 1.33182 1.74285 1.44174 1.19684 0.97299 0.93775 0.95549 1.20962 0.98552 0.94315 0.97364 1.21151 0.97221 0.99816 0.95822 1.21100 0.99854 0.94050 0.99436 1.21050 0.99160 0.94859 0.99084 1.20963 0.96961 0.99483 0.95900 0.93298 0.92022 0.92240 0.89968 0.91905 0.95132 0.93978 0.92831 0.88711 0.92961 0.83002 0.91364 0.91135 0.90667 0.91188 0.93762 0.93748 0.77521 0.85950 0.86300 0.86531 0.86409 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.47 2.46 -175.06 -0.43 -12.90 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 5 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 13 C 0.50 10.32 7.72 -10.99 -0.08 10.23 16 14 O -0.53 -13.24 15.90 5.56 0.09 -13.15 16 15 C 0.04 0.60 4.55 -4.98 -0.02 0.58 16 16 N -0.66 -9.14 5.21 -109.22 -0.57 -9.71 16 17 C 0.13 1.38 2.27 -68.86 -0.16 1.22 16 18 H 0.09 0.90 7.55 -51.93 -0.39 0.51 16 19 C -0.14 -1.24 4.65 -26.73 -0.12 -1.36 16 20 C -0.12 -0.98 5.18 -26.73 -0.14 -1.12 16 21 C 0.07 0.57 7.05 37.16 0.26 0.83 16 22 O -0.58 -4.85 13.66 -35.23 -0.48 -5.33 16 23 C -0.06 -0.72 4.25 -104.63 -0.45 -1.17 16 24 C -0.09 -1.13 9.33 -39.58 -0.37 -1.50 16 25 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 26 C -0.13 -1.31 10.05 -39.58 -0.40 -1.70 16 27 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 28 C -0.11 -1.23 8.92 -39.58 -0.35 -1.58 16 29 H 0.05 0.58 7.22 -51.93 -0.38 0.21 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.09 1.27 7.18 -51.93 -0.37 0.90 16 38 H 0.05 0.62 6.62 -51.93 -0.34 0.27 16 39 H 0.35 4.82 7.77 -39.29 -0.31 4.52 16 40 H 0.07 0.56 7.54 -51.93 -0.39 0.17 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.72 7.09 -51.93 -0.37 0.36 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.38 1.45 9.12 45.56 0.42 1.86 16 47 H 0.12 1.47 7.29 -52.49 -0.38 1.08 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 50 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 51 H 0.12 1.08 8.04 -52.48 -0.42 0.66 16 LS Contribution 416.16 15.07 6.27 6.27 Total: -1.00 -35.41 416.16 -9.97 -45.38 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.85 Total: 4.71 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.72 Total: -6.35 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.26 Total: -48.71 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.39 Total: -18.48 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.41 -9.97 -45.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271856947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.834 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds