Wall clock time and date at job start Tue Mar 31 2020 18:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47149 * 2 1 4 4 C 1.46494 * 120.00334 * 269.99646 * 3 2 1 5 5 C 1.52992 * 109.47207 * 270.00463 * 4 3 2 6 6 C 1.53000 * 109.47141 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47490 * 179.97438 * 6 5 4 8 8 C 1.46900 * 111.00058 * 66.04247 * 7 6 5 9 9 C 1.46897 * 111.00470 * 189.99988 * 7 6 5 10 10 C 1.34784 * 119.99729 * 90.00176 * 3 2 1 11 11 O 1.21287 * 119.99845 * 179.97438 * 10 3 2 12 12 C 1.50701 * 119.99892 * 359.97438 * 10 3 2 13 13 C 1.50699 * 109.46735 * 180.02562 * 12 10 3 14 14 C 1.38305 * 119.93408 * 89.99836 * 13 12 10 15 15 C 1.38101 * 120.07071 * 179.97438 * 14 13 12 16 16 C 1.38876 * 119.92956 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06861 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53840 * 17 16 15 19 19 H 1.08003 * 120.00029 * 354.94359 * 18 17 16 20 20 C 1.38659 * 120.00122 * 174.94542 * 18 17 16 21 21 N 1.31558 * 119.99705 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00035 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47181 * 89.99980 * 22 20 18 24 24 H 1.48498 * 109.47260 * 210.00361 * 22 20 18 25 25 H 1.48502 * 109.47130 * 330.00179 * 22 20 18 26 26 C 1.38880 * 119.86555 * 0.27954 * 16 15 14 27 27 C 1.38102 * 119.92551 * 359.44514 * 26 16 15 28 28 H 1.09003 * 109.47349 * 300.00080 * 1 2 3 29 29 H 1.09006 * 109.46642 * 60.00008 * 1 2 3 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46827 * 239.99978 * 2 1 3 32 32 H 1.09004 * 109.46827 * 120.00505 * 2 1 3 33 33 H 1.09002 * 109.46753 * 30.00362 * 4 3 2 34 34 H 1.09005 * 109.47346 * 150.00083 * 4 3 2 35 35 H 1.09002 * 109.47182 * 299.99637 * 5 4 3 36 36 H 1.08999 * 109.47519 * 59.99926 * 5 4 3 37 37 H 1.09003 * 109.47385 * 300.00076 * 6 5 4 38 38 H 1.08998 * 109.47621 * 59.99703 * 6 5 4 39 39 H 1.09006 * 109.47050 * 60.00281 * 8 7 6 40 40 H 1.08994 * 109.47465 * 180.02562 * 8 7 6 41 41 H 1.09000 * 109.47394 * 300.00704 * 8 7 6 42 42 H 1.09000 * 109.46997 * 59.99902 * 9 7 6 43 43 H 1.08998 * 109.47418 * 179.97438 * 9 7 6 44 44 H 1.09004 * 109.47068 * 300.00384 * 9 7 6 45 45 H 1.08986 * 109.47293 * 59.99986 * 12 10 3 46 46 H 1.09005 * 109.47046 * 299.99669 * 12 10 3 47 47 H 1.07999 * 119.96326 * 0.02562 * 14 13 12 48 48 H 1.07997 * 120.03156 * 180.02562 * 15 14 13 49 49 H 0.96997 * 119.99350 * 179.97438 * 21 20 18 50 50 H 1.07996 * 120.04097 * 179.72435 * 26 16 15 51 51 H 1.07997 * 119.96688 * 180.27743 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.7076 1.8313 -1.7103 6 6 3.9625 2.5521 -3.0356 7 7 5.3501 2.3217 -3.4594 8 6 5.5737 0.9063 -3.7827 9 6 5.7036 3.1834 -4.5953 10 6 2.2430 2.0165 1.1673 11 8 2.6478 3.1598 1.1673 12 6 1.9913 1.3062 2.4724 13 6 2.3173 2.2296 3.6178 14 6 1.3366 3.0521 4.1418 15 6 1.6321 3.8990 5.1918 16 6 2.9158 3.9247 5.7212 17 8 3.2092 4.7558 6.7537 18 6 2.1847 5.4456 7.2944 19 1 1.2009 5.3861 6.8528 20 6 2.3941 6.2314 8.4175 21 7 1.3943 6.9041 8.9453 22 14 4.0955 6.3338 9.1817 23 1 4.8494 7.4536 8.5631 24 1 3.9687 6.5696 10.6424 25 1 4.8210 5.0595 8.9472 26 6 3.9000 3.1022 5.1887 27 6 3.5968 2.2534 4.1424 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0283 34 1 2.0957 3.1411 -1.1383 35 1 4.3884 2.2154 -0.9506 36 1 3.8745 0.7621 -1.8407 37 1 3.2816 2.1677 -3.7951 38 1 3.7954 3.6213 -2.9057 39 1 4.9071 0.6088 -4.5922 40 1 6.6088 0.7636 -4.0929 41 1 5.3712 0.2961 -2.9025 42 1 5.5955 4.2287 -4.3059 43 1 6.7360 2.9928 -4.8885 44 1 5.0416 2.9684 -5.4343 45 1 2.6211 0.4185 2.5303 46 1 0.9432 1.0125 2.5299 47 1 0.3384 3.0313 3.7300 48 1 0.8657 4.5407 5.6008 49 1 1.5408 7.4535 9.7311 50 1 4.9003 3.1232 5.5952 51 1 4.3605 1.6103 3.7308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276171472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:04 Heat of formation + Delta-G solvation = -34.640912 kcal Electronic energy + Delta-G solvation = -28358.478386 eV Core-core repulsion = 24451.781515 eV Total energy + Delta-G solvation = -3906.696871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.15503 -38.99146 -38.01922 -36.75675 -35.99774 -33.22832 -32.39489 -31.31204 -30.25650 -30.15974 -27.96999 -27.46308 -26.02709 -24.80285 -23.67837 -22.94698 -22.01999 -21.18179 -20.55811 -18.92113 -17.82374 -17.20954 -17.18830 -16.57882 -15.88267 -15.76243 -15.29043 -15.03343 -14.61782 -14.53061 -14.30446 -14.08547 -13.99632 -13.72815 -13.62761 -13.44732 -13.05501 -12.82186 -12.72624 -12.60386 -12.39521 -12.32868 -12.14550 -12.10713 -12.04072 -11.75637 -11.68308 -11.62947 -11.30826 -11.23230 -10.87116 -10.77555 -10.71951 -10.59471 -10.09759 -9.63207 -9.32245 -8.80693 -8.79438 -8.71810 -8.16312 -7.23539 -6.36273 -4.02391 2.22022 2.23007 2.76612 2.92568 3.26974 3.29994 3.44730 3.62361 4.28802 4.41274 4.57672 4.58650 4.74870 4.76339 4.85110 4.87551 4.92862 4.99143 5.04504 5.07977 5.13457 5.15306 5.19425 5.22218 5.25832 5.30657 5.32613 5.44372 5.49757 5.52168 5.52811 5.55400 5.63805 5.72413 5.82150 5.89222 5.90297 6.02878 6.20163 6.40257 6.45271 6.63609 6.65408 6.67673 6.86612 7.09065 7.29250 7.34268 7.37671 7.68557 7.86621 8.10094 8.31392 8.99280 9.62730 10.71499 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.002205 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.696196 B =12697.407377 C =13839.538532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.622 5.622 4 C 0.118 3.882 5 C -0.130 4.130 6 C 0.058 3.942 7 N -0.548 5.548 8 C 0.022 3.978 9 C 0.024 3.976 10 C 0.512 3.488 11 O -0.516 6.516 12 C -0.081 4.081 13 C -0.160 4.160 14 C -0.059 4.059 15 C -0.219 4.219 16 C 0.162 3.838 17 O -0.219 6.219 18 C -0.387 4.387 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.190 4.190 27 C -0.062 4.062 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.024 0.976 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.132 0.868 49 H 0.279 0.721 50 H 0.116 0.884 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -16.770 -25.295 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.357 5.357 4 C -0.005 4.005 5 C -0.169 4.169 6 C -0.070 4.070 7 N -0.271 5.271 8 C -0.126 4.126 9 C -0.124 4.124 10 C 0.300 3.700 11 O -0.390 6.390 12 C -0.120 4.120 13 C -0.162 4.162 14 C -0.077 4.077 15 C -0.238 4.238 16 C 0.110 3.890 17 O -0.124 6.124 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.210 4.210 27 C -0.080 4.080 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.124 0.876 48 H 0.150 0.850 49 H 0.089 0.911 50 H 0.134 0.866 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.435 -15.796 -24.590 29.328 hybrid contribution -0.104 -0.090 -0.443 0.464 sum 2.331 -15.886 -25.032 29.739 Atomic orbital electron populations 1.22239 0.95923 1.02278 1.02756 1.21538 0.94421 0.82608 1.03186 1.48072 1.67418 1.14334 1.05882 1.21314 0.95438 0.98950 0.84845 1.21948 0.97401 1.00394 0.97200 1.22067 0.87785 1.01227 0.95950 1.61934 1.23284 1.05886 1.36039 1.22433 1.01125 0.88920 1.00136 1.22384 1.00727 0.97893 0.91376 1.21014 0.76935 0.86938 0.85113 1.90745 1.43589 1.17657 1.87005 1.20485 1.03103 0.98109 0.90345 1.18730 0.94835 1.02918 0.99679 1.20553 0.97668 0.94461 0.95007 1.21215 0.97640 1.04225 1.00729 1.19121 0.92795 0.88982 0.88107 1.83568 1.36861 1.49832 1.42116 1.20774 0.89937 1.24381 1.11213 0.87653 1.24469 0.99073 0.95211 0.95339 1.69651 1.31073 1.28723 1.22492 0.86174 0.83131 0.79755 0.77810 1.19900 1.20875 1.18354 1.20147 0.98791 1.00642 1.01397 1.20393 0.94993 0.97545 0.95062 0.92016 0.92445 0.91489 0.90662 0.90044 0.91164 0.89816 0.90369 0.92008 0.94912 0.90432 0.95808 0.91486 0.91085 0.91176 0.91353 0.95779 0.89034 0.88990 0.87628 0.84997 0.91131 0.86572 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 2 C 0.11 0.69 5.93 -4.04 -0.02 0.66 16 3 N -0.62 -6.22 2.47 -173.69 -0.43 -6.65 16 4 C 0.12 1.09 5.41 -4.05 -0.02 1.07 16 5 C -0.13 -1.18 5.46 -26.74 -0.15 -1.33 16 6 C 0.06 0.48 4.96 -3.82 -0.02 0.46 16 7 N -0.55 -4.80 5.02 -251.26 -1.26 -6.06 16 8 C 0.02 0.15 9.32 60.06 0.56 0.71 16 9 C 0.02 0.17 9.57 60.06 0.57 0.75 16 10 C 0.51 7.10 7.67 -10.98 -0.08 7.01 16 11 O -0.52 -9.68 15.61 5.55 0.09 -9.59 16 12 C -0.08 -1.01 4.38 -29.03 -0.13 -1.14 16 13 C -0.16 -2.77 4.38 -104.57 -0.46 -3.23 16 14 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 15 C -0.22 -4.97 9.17 -39.40 -0.36 -5.33 16 16 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 17 O -0.22 -5.99 8.59 0.05 0.00 -5.99 16 18 C -0.39 -11.23 9.95 30.89 0.31 -10.93 16 19 H 0.11 3.12 5.44 -52.48 -0.29 2.83 16 20 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 21 N -0.88 -25.96 13.96 55.48 0.77 -25.19 16 22 Si 0.91 22.24 28.62 -169.99 -4.86 17.38 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.19 -4.00 9.99 -39.39 -0.39 -4.40 16 27 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 28 H 0.06 0.45 7.22 -51.93 -0.37 0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 32 H 0.08 0.47 6.44 -51.93 -0.33 0.13 16 33 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 34 H 0.08 0.96 7.42 -51.93 -0.39 0.57 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.49 6.55 -51.93 -0.34 0.15 16 37 H 0.03 0.24 8.12 -51.93 -0.42 -0.19 16 38 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 39 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.07 0.49 6.47 -51.93 -0.34 0.16 16 42 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 0.92 7.34 -51.94 -0.38 0.54 16 46 H 0.09 0.97 7.13 -51.93 -0.37 0.60 16 47 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 48 H 0.13 3.12 5.64 -52.49 -0.30 2.83 16 49 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 51 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 413.07 15.07 6.22 6.22 Total: -1.00 -33.84 413.07 -8.97 -42.81 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.56 Total: 1.06 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -0.94 Total: -14.00 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.92 Total: -37.90 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.58 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.86 Total: 17.38 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.84 -8.97 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276171472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.169 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds